RNA–Protein interactions for RNA: ENST00000496896.1

TRIM4-205, Transcript of tripartite motif containing 4, humanhuman

TSL 5

Gene TRIM4, Length 601 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-205ENST00000496896 AEBP2Q6ZN18 517 aaPredicted RBP28.77■■■□□ 2.2
TRIM4-205ENST00000496896 CHIC1Q5VXU3 224 aa26.95■■□□□ 1.9
TRIM4-205ENST00000496896 SENP3Q9H4L4 574 aaPredicted RBP24.68■■□□□ 1.54
TRIM4-205ENST00000496896 PHF23Q9BUL5 403 aaPredicted RBP24.26■■□□□ 1.47
TRIM4-205ENST00000496896 FOXD1Q16676 465 aa23.03■■□□□ 1.28
TRIM4-205ENST00000496896 POTEDQ86YR6 584 aa22.1■■□□□ 1.13
TRIM4-205ENST00000496896 MSH5O43196 834 aa21.8■■□□□ 1.08
TRIM4-205ENST00000496896 PIAS4Q8N2W9 510 aaPredicted RBP21.43■■□□□ 1.02
TRIM4-205ENST00000496896 PLPPR3Q6T4P5 718 aa21.26■□□□□ 0.99
TRIM4-205ENST00000496896 PPP6R1Q9UPN7 881 aa21.1■□□□□ 0.97
TRIM4-205ENST00000496896 ADRA2BP18089 450 aa21.02■□□□□ 0.96
TRIM4-205ENST00000496896 DMRT2Q9Y5R5 561 aa19.48■□□□□ 0.71
TRIM4-205ENST00000496896 MAPK8IP2Q13387 824 aaPredicted RBP19.46■□□□□ 0.71
TRIM4-205ENST00000496896 SCAF1Q9H7N4 1312 aaKnown RBP19.31■□□□□ 0.68
TRIM4-205ENST00000496896 CACNB1Q02641 598 aaPredicted RBP19■□□□□ 0.63
TRIM4-205ENST00000496896 DCAF8L1A6NGE4 600 aa18.73■□□□□ 0.59
TRIM4-205ENST00000496896 HOXD11P31277 338 aaPredicted RBP18.56■□□□□ 0.56
TRIM4-205ENST00000496896 PPP4R3CPQ6ZMV5 832 aa18.54■□□□□ 0.56
TRIM4-205ENST00000496896 RNF39Q9H2S5 420 aa18.52■□□□□ 0.56
TRIM4-205ENST00000496896 CNKSR2Q8WXI2 1034 aa18.33■□□□□ 0.52
TRIM4-205ENST00000496896 RNF216Q9NWF9 866 aaPredicted RBP18.29■□□□□ 0.52
TRIM4-205ENST00000496896 C1QBPQ07021 282 aaKnown RBP18.24■□□□□ 0.51
TRIM4-205ENST00000496896 DNAJC5BQ9UF47 199 aa18.03■□□□□ 0.48
TRIM4-205ENST00000496896 NCBP3Q53F19 620 aaKnown RBP17.71■□□□□ 0.43
TRIM4-205ENST00000496896 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.7■□□□□ 0.423e-7■■■■□ 20.2
TRIM4-205ENST00000496896 NPM3O75607 178 aaKnown RBP17.42■□□□□ 0.38
TRIM4-205ENST00000496896 U3KPZ7 1027 aaPredicted RBP17.26■□□□□ 0.35
TRIM4-205ENST00000496896 POTEHQ6S545 545 aa17.23■□□□□ 0.35
TRIM4-205ENST00000496896 CAPN15O75808 1086 aa17.18■□□□□ 0.34
TRIM4-205ENST00000496896 DSG3P32926 999 aa17.17■□□□□ 0.34
TRIM4-205ENST00000496896 SPINK5Q9NQ38 1064 aaPredicted RBP17.15■□□□□ 0.34
TRIM4-205ENST00000496896 KCNA4P22459 653 aa17.13■□□□□ 0.33
TRIM4-205ENST00000496896 APLP2Q06481 763 aa16.79■□□□□ 0.28
TRIM4-205ENST00000496896 TRHP20396 242 aaPredicted RBP16.78■□□□□ 0.28
TRIM4-205ENST00000496896 SLC4A2P04920 1241 aa16.75■□□□□ 0.27
TRIM4-205ENST00000496896 ZNF219Q9P2Y4 722 aaPredicted RBP16.75■□□□□ 0.27
TRIM4-205ENST00000496896 ABCB7O75027 752 aa16.71■□□□□ 0.27
TRIM4-205ENST00000496896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.64■□□□□ 0.25
TRIM4-205ENST00000496896 HNRNPUL2Q1KMD3 747 aaKnown RBP16.64■□□□□ 0.25
TRIM4-205ENST00000496896 SAMD1Q6SPF0 538 aaPredicted RBP16.5■□□□□ 0.23
TRIM4-205ENST00000496896 RBM42Q9BTD8 480 aaKnown RBP16.46■□□□□ 0.23
TRIM4-205ENST00000496896 SLC4A1APQ9BWU0 796 aaKnown RBP16.3■□□□□ 0.2
TRIM4-205ENST00000496896 CHRDL2Q6WN34 429 aa16.26■□□□□ 0.19
TRIM4-205ENST00000496896 POLA2Q14181 598 aa16.19■□□□□ 0.18
TRIM4-205ENST00000496896 MYCNP04198 464 aaPredicted RBP16.15■□□□□ 0.18
TRIM4-205ENST00000496896 AKT1S1Q96B36 256 aa15.93■□□□□ 0.14
TRIM4-205ENST00000496896 SP7Q8TDD2 431 aaPredicted RBP15.92■□□□□ 0.14
TRIM4-205ENST00000496896 FOXD4L1Q9NU39 408 aa15.88■□□□□ 0.13
TRIM4-205ENST00000496896 ZBTB12Q9Y330 459 aaPredicted RBP15.87■□□□□ 0.13
TRIM4-205ENST00000496896 REM2Q8IYK8 340 aaPredicted RBP15.77■□□□□ 0.12
TRIM4-205ENST00000496896 ATF5Q9Y2D1 282 aaPredicted RBP15.76■□□□□ 0.11
TRIM4-205ENST00000496896 ZBTB22O15209 634 aa15.75■□□□□ 0.11
TRIM4-205ENST00000496896 PIP4P2Q8N4L2 257 aa15.74■□□□□ 0.11
TRIM4-205ENST00000496896 OSCARQ8IYS5 282 aa15.71■□□□□ 0.11
TRIM4-205ENST00000496896 HAX1O00165 279 aa15.62■□□□□ 0.09
TRIM4-205ENST00000496896 PITPNM1O00562 1244 aa15.61■□□□□ 0.09
TRIM4-205ENST00000496896 FXR2P51116 673 aaKnown RBP eCLIP15.57■□□□□ 0.08
TRIM4-205ENST00000496896 CSRNP3Q8WYN3 585 aa15.52■□□□□ 0.08
TRIM4-205ENST00000496896 EHMT2Q96KQ7 1210 aa15.52■□□□□ 0.08
TRIM4-205ENST00000496896 ATXN8OSP0DMR3 200 aa15.42■□□□□ 0.06
TRIM4-205ENST00000496896 EVX2Q03828 476 aa15.33■□□□□ 0.04
TRIM4-205ENST00000496896 SPDYE2BA6NHP3 402 aa15.31■□□□□ 0.04
TRIM4-205ENST00000496896 SPDYE6P0CI01 402 aa15.31■□□□□ 0.04
TRIM4-205ENST00000496896 SPDYE2Q495Y8 402 aa15.31■□□□□ 0.04
TRIM4-205ENST00000496896 FBLN2P98095 1184 aa15.26■□□□□ 0.03
TRIM4-205ENST00000496896 PRKAR2AP13861 404 aaKnown RBP15.21■□□□□ 0.03
TRIM4-205ENST00000496896 SPDYE1Q8NFV5 336 aaPredicted RBP15.18■□□□□ 0.02
TRIM4-205ENST00000496896 CLEC11AQ9Y240 323 aa15.18■□□□□ 0.02
TRIM4-205ENST00000496896 C19orf67A6NJJ6 358 aa15.09■□□□□ 0.01
TRIM4-205ENST00000496896 ZNF692Q9BU19 519 aaPredicted RBP15.04■□□□□ -0
TRIM4-205ENST00000496896 SSUH2Q9Y2M2 353 aa15.03■□□□□ -0
TRIM4-205ENST00000496896 MKRN4PQ13434 485 aaPredicted RBP15.02■□□□□ -0
TRIM4-205ENST00000496896 GABBR2O75899 941 aa15□□□□□ -0.01
TRIM4-205ENST00000496896 LHX8Q68G74 356 aa14.92□□□□□ -0.02
TRIM4-205ENST00000496896 CHADLQ6NUI6 762 aa14.92□□□□□ -0.02
TRIM4-205ENST00000496896 PRR29P0C7W0 189 aa14.85□□□□□ -0.03
TRIM4-205ENST00000496896 PABPN1Q86U42 306 aaKnown RBP eCLIP14.8□□□□□ -0.04
TRIM4-205ENST00000496896 CD44P16070 742 aaKnown RBP14.71□□□□□ -0.05
TRIM4-205ENST00000496896 POTEIP0CG38 1075 aa14.65□□□□□ -0.06
TRIM4-205ENST00000496896 FARP1Q9Y4F1 1045 aaPredicted RBP14.65□□□□□ -0.06
TRIM4-205ENST00000496896 CLCN6P51797 869 aa14.63□□□□□ -0.07
TRIM4-205ENST00000496896 DCBLD2Q96PD2 775 aa14.52□□□□□ -0.09
TRIM4-205ENST00000496896 ZNF579Q8NAF0 562 aaKnown RBP14.45□□□□□ -0.1
TRIM4-205ENST00000496896 ZRANB1Q9UGI0 708 aa14.42□□□□□ -0.1
TRIM4-205ENST00000496896 PLSCR2Q9NRY7 297 aa14.41□□□□□ -0.1
TRIM4-205ENST00000496896 CREBZFQ9NS37 354 aa14.33□□□□□ -0.12
TRIM4-205ENST00000496896 STAG3Q9UJ98 1225 aa14.31□□□□□ -0.12
TRIM4-205ENST00000496896 GALR2O43603 387 aaPredicted RBP14.3□□□□□ -0.12
TRIM4-205ENST00000496896 PAK3O75914 559 aaPredicted RBP14.23□□□□□ -0.13
TRIM4-205ENST00000496896 SPDYE4A6NLX3 237 aa14.22□□□□□ -0.13
TRIM4-205ENST00000496896 OTUD5Q96G74 571 aa14.22□□□□□ -0.13
TRIM4-205ENST00000496896 PHF12Q96QT6 1004 aa14.16□□□□□ -0.14
TRIM4-205ENST00000496896 POTEB2H3BUK9 544 aa14.15□□□□□ -0.14
TRIM4-205ENST00000496896 NPM1P06748 294 aaKnown RBP eCLIP14.09□□□□□ -0.15
TRIM4-205ENST00000496896 POTEMA6NI47 508 aa14.08□□□□□ -0.16
TRIM4-205ENST00000496896 PROM2Q8N271 834 aa14.05□□□□□ -0.16
TRIM4-205ENST00000496896 PELP1Q8IZL8 1130 aaKnown RBP14.04□□□□□ -0.16
TRIM4-205ENST00000496896 POTEGQ6S5H5 508 aa14.03□□□□□ -0.16
TRIM4-205ENST00000496896 MNX1P50219 401 aaPredicted RBP14.01□□□□□ -0.17
TRIM4-205ENST00000496896 FKBP8Q14318 412 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms