RNA–Protein interactions for RNA: ENST00000496205.1

CLK1-214, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 480 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-214ENST00000496205 AEBP2Q6ZN18 517 aaPredicted RBP27.23■■□□□ 1.95
CLK1-214ENST00000496205 CHIC1Q5VXU3 224 aa25.67■■□□□ 1.7
CLK1-214ENST00000496205 SENP3Q9H4L4 574 aaPredicted RBP23.13■■□□□ 1.29
CLK1-214ENST00000496205 PHF23Q9BUL5 403 aaPredicted RBP22.88■■□□□ 1.25
CLK1-214ENST00000496205 FOXD1Q16676 465 aa21.65■■□□□ 1.06
CLK1-214ENST00000496205 PLPPR3Q6T4P5 718 aa20.4■□□□□ 0.86
CLK1-214ENST00000496205 MSH5O43196 834 aa20.22■□□□□ 0.83
CLK1-214ENST00000496205 PPP6R1Q9UPN7 881 aa20.2■□□□□ 0.82
CLK1-214ENST00000496205 PIAS4Q8N2W9 510 aaPredicted RBP20.16■□□□□ 0.82
CLK1-214ENST00000496205 ADRA2BP18089 450 aa20.11■□□□□ 0.81
CLK1-214ENST00000496205 POTEDQ86YR6 584 aa20.04■□□□□ 0.8
CLK1-214ENST00000496205 MAPK8IP2Q13387 824 aaPredicted RBP18.54■□□□□ 0.56
CLK1-214ENST00000496205 DMRT2Q9Y5R5 561 aa18.35■□□□□ 0.53
CLK1-214ENST00000496205 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
CLK1-214ENST00000496205 PPP4R3CPQ6ZMV5 832 aa17.91■□□□□ 0.46
CLK1-214ENST00000496205 HOXD11P31277 338 aaPredicted RBP17.63■□□□□ 0.41
CLK1-214ENST00000496205 DCAF8L1A6NGE4 600 aa17.6■□□□□ 0.41
CLK1-214ENST00000496205 CNKSR2Q8WXI2 1034 aa17.57■□□□□ 0.4
CLK1-214ENST00000496205 CACNB1Q02641 598 aaPredicted RBP17.47■□□□□ 0.39
CLK1-214ENST00000496205 RNF216Q9NWF9 866 aaPredicted RBP17.45■□□□□ 0.38
CLK1-214ENST00000496205 RNF39Q9H2S5 420 aa17.3■□□□□ 0.36
CLK1-214ENST00000496205 NCBP3Q53F19 620 aaKnown RBP17.11■□□□□ 0.33
CLK1-214ENST00000496205 C1QBPQ07021 282 aaKnown RBP17■□□□□ 0.31
CLK1-214ENST00000496205 DNAJC5BQ9UF47 199 aa16.99■□□□□ 0.31
CLK1-214ENST00000496205 NPM3O75607 178 aaKnown RBP16.95■□□□□ 0.3
CLK1-214ENST00000496205 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.78■□□□□ 0.282e-9■■□□□ 13
CLK1-214ENST00000496205 KCNA4P22459 653 aa16.54■□□□□ 0.24
CLK1-214ENST00000496205 U3KPZ7 1027 aaPredicted RBP16.46■□□□□ 0.23
CLK1-214ENST00000496205 SPINK5Q9NQ38 1064 aaPredicted RBP16.29■□□□□ 0.2
CLK1-214ENST00000496205 SLC4A2P04920 1241 aa16.26■□□□□ 0.19
CLK1-214ENST00000496205 CAPN15O75808 1086 aa16.21■□□□□ 0.19
CLK1-214ENST00000496205 DSG3P32926 999 aa16.17■□□□□ 0.18
CLK1-214ENST00000496205 TRHP20396 242 aaPredicted RBP15.93■□□□□ 0.14
CLK1-214ENST00000496205 ABCB7O75027 752 aa15.85■□□□□ 0.13
CLK1-214ENST00000496205 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.83■□□□□ 0.12
CLK1-214ENST00000496205 APLP2Q06481 763 aa15.83■□□□□ 0.12
CLK1-214ENST00000496205 HNRNPUL2Q1KMD3 747 aaKnown RBP15.83■□□□□ 0.12
CLK1-214ENST00000496205 ZNF219Q9P2Y4 722 aaPredicted RBP15.83■□□□□ 0.12
CLK1-214ENST00000496205 SAMD1Q6SPF0 538 aaPredicted RBP15.77■□□□□ 0.12
CLK1-214ENST00000496205 POTEHQ6S545 545 aa15.66■□□□□ 0.1
CLK1-214ENST00000496205 MYCNP04198 464 aaPredicted RBP15.62■□□□□ 0.09
CLK1-214ENST00000496205 SLC4A1APQ9BWU0 796 aaKnown RBP15.53■□□□□ 0.08
CLK1-214ENST00000496205 POLA2Q14181 598 aa15.48■□□□□ 0.07
CLK1-214ENST00000496205 FOXD4L1Q9NU39 408 aa15.41■□□□□ 0.06
CLK1-214ENST00000496205 ATF5Q9Y2D1 282 aaPredicted RBP15.39■□□□□ 0.05
CLK1-214ENST00000496205 RBM42Q9BTD8 480 aaKnown RBP15.33■□□□□ 0.04
CLK1-214ENST00000496205 ZBTB22O15209 634 aa15.24■□□□□ 0.03
CLK1-214ENST00000496205 CHRDL2Q6WN34 429 aa15.12■□□□□ 0.01
CLK1-214ENST00000496205 ZBTB12Q9Y330 459 aaPredicted RBP15.05■□□□□ -0
CLK1-214ENST00000496205 AKT1S1Q96B36 256 aa15□□□□□ -0.01
CLK1-214ENST00000496205 OSCARQ8IYS5 282 aa14.99□□□□□ -0.01
CLK1-214ENST00000496205 ATXN8OSP0DMR3 200 aa14.92□□□□□ -0.02
CLK1-214ENST00000496205 REM2Q8IYK8 340 aaPredicted RBP14.9□□□□□ -0.02
CLK1-214ENST00000496205 PITPNM1O00562 1244 aa14.75□□□□□ -0.05
CLK1-214ENST00000496205 PIP4P2Q8N4L2 257 aa14.75□□□□□ -0.05
CLK1-214ENST00000496205 FBLN2P98095 1184 aa14.66□□□□□ -0.06
CLK1-214ENST00000496205 MKRN4PQ13434 485 aaPredicted RBP14.66□□□□□ -0.06
CLK1-214ENST00000496205 FXR2P51116 673 aaKnown RBP eCLIP14.64□□□□□ -0.07
CLK1-214ENST00000496205 SPDYE2BA6NHP3 402 aa14.62□□□□□ -0.07
CLK1-214ENST00000496205 SPDYE6P0CI01 402 aa14.62□□□□□ -0.07
CLK1-214ENST00000496205 SPDYE2Q495Y8 402 aa14.62□□□□□ -0.07
CLK1-214ENST00000496205 SP7Q8TDD2 431 aaPredicted RBP14.6□□□□□ -0.07
CLK1-214ENST00000496205 HAX1O00165 279 aa14.5□□□□□ -0.09
CLK1-214ENST00000496205 ZNF692Q9BU19 519 aaPredicted RBP14.45□□□□□ -0.1
CLK1-214ENST00000496205 SSUH2Q9Y2M2 353 aa14.45□□□□□ -0.1
CLK1-214ENST00000496205 CLEC11AQ9Y240 323 aa14.42□□□□□ -0.1
CLK1-214ENST00000496205 EVX2Q03828 476 aa14.41□□□□□ -0.1
CLK1-214ENST00000496205 SPDYE1Q8NFV5 336 aaPredicted RBP14.4□□□□□ -0.1
CLK1-214ENST00000496205 CSRNP3Q8WYN3 585 aa14.4□□□□□ -0.1
CLK1-214ENST00000496205 PRKAR2AP13861 404 aaKnown RBP14.35□□□□□ -0.11
CLK1-214ENST00000496205 PABPN1Q86U42 306 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLK1-214ENST00000496205 CHADLQ6NUI6 762 aa14.21□□□□□ -0.13
CLK1-214ENST00000496205 C19orf67A6NJJ6 358 aa14.18□□□□□ -0.14
CLK1-214ENST00000496205 PRR29P0C7W0 189 aa14.14□□□□□ -0.15
CLK1-214ENST00000496205 EHMT2Q96KQ7 1210 aa14.12□□□□□ -0.15
CLK1-214ENST00000496205 GABBR2O75899 941 aa14.01□□□□□ -0.17
CLK1-214ENST00000496205 FARP1Q9Y4F1 1045 aaPredicted RBP13.94□□□□□ -0.18
CLK1-214ENST00000496205 CD44P16070 742 aaKnown RBP13.88□□□□□ -0.19
CLK1-214ENST00000496205 SPDYE4A6NLX3 237 aa13.83□□□□□ -0.2
CLK1-214ENST00000496205 CREBZFQ9NS37 354 aa13.81□□□□□ -0.2
CLK1-214ENST00000496205 STAG3Q9UJ98 1225 aa13.77□□□□□ -0.21
CLK1-214ENST00000496205 POTEIP0CG38 1075 aa13.76□□□□□ -0.21
CLK1-214ENST00000496205 LHX8Q68G74 356 aa13.71□□□□□ -0.21
CLK1-214ENST00000496205 ZRANB1Q9UGI0 708 aa13.67□□□□□ -0.22
CLK1-214ENST00000496205 ZNF579Q8NAF0 562 aaKnown RBP13.65□□□□□ -0.22
CLK1-214ENST00000496205 CLCN6P51797 869 aa13.63□□□□□ -0.23
CLK1-214ENST00000496205 MNX1P50219 401 aaPredicted RBP13.58□□□□□ -0.24
CLK1-214ENST00000496205 DCBLD2Q96PD2 775 aa13.55□□□□□ -0.24
CLK1-214ENST00000496205 GALR2O43603 387 aaPredicted RBP13.54□□□□□ -0.24
CLK1-214ENST00000496205 PROM2Q8N271 834 aa13.5□□□□□ -0.25
CLK1-214ENST00000496205 PHF12Q96QT6 1004 aa13.5□□□□□ -0.25
CLK1-214ENST00000496205 NPM1P06748 294 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLK1-214ENST00000496205 PAK3O75914 559 aaPredicted RBP13.45□□□□□ -0.26
CLK1-214ENST00000496205 PELP1Q8IZL8 1130 aaKnown RBP13.33□□□□□ -0.28
CLK1-214ENST00000496205 POTEB2H3BUK9 544 aa13.32□□□□□ -0.28
CLK1-214ENST00000496205 MS4A3Q96HJ5 214 aa13.3□□□□□ -0.28
CLK1-214ENST00000496205 TSPYL2Q9H2G4 693 aaPredicted RBP13.3□□□□□ -0.28
CLK1-214ENST00000496205 OTUD5Q96G74 571 aa13.25□□□□□ -0.29
CLK1-214ENST00000496205 CCDC61Q9Y6R9 512 aa13.24□□□□□ -0.29
CLK1-214ENST00000496205 ASTLQ6HA08 431 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms