RNA–Protein interactions for RNA: ENST00000493109.2

COL12A1-209, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5

Gene COL12A1, Length 794 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-209ENST00000493109 AEBP2Q6ZN18 517 aaPredicted RBP38.62■■■■□ 3.77
COL12A1-209ENST00000493109 CHIC1Q5VXU3 224 aa36.49■■■■□ 3.43
COL12A1-209ENST00000493109 SENP3Q9H4L4 574 aaPredicted RBP32.74■■■□□ 2.83
COL12A1-209ENST00000493109 PHF23Q9BUL5 403 aaPredicted RBP32.38■■■□□ 2.77
COL12A1-209ENST00000493109 FOXD1Q16676 465 aa30.65■■■□□ 2.5
COL12A1-209ENST00000493109 PLPPR3Q6T4P5 718 aa29.04■■■□□ 2.24
COL12A1-209ENST00000493109 PPP6R1Q9UPN7 881 aa28.68■■■□□ 2.18
COL12A1-209ENST00000493109 MSH5O43196 834 aa28.56■■■□□ 2.16
COL12A1-209ENST00000493109 PIAS4Q8N2W9 510 aaPredicted RBP28.55■■■□□ 2.16
COL12A1-209ENST00000493109 ADRA2BP18089 450 aa28.52■■■□□ 2.16
COL12A1-209ENST00000493109 POTEDQ86YR6 584 aa28.13■■■□□ 2.09
COL12A1-209ENST00000493109 MAPK8IP2Q13387 824 aaPredicted RBP26.26■■□□□ 1.79
COL12A1-209ENST00000493109 DMRT2Q9Y5R5 561 aa26.02■■□□□ 1.76
COL12A1-209ENST00000493109 SCAF1Q9H7N4 1312 aaKnown RBP25.88■■□□□ 1.73
COL12A1-209ENST00000493109 PPP4R3CPQ6ZMV5 832 aa25.5■■□□□ 1.67
COL12A1-209ENST00000493109 HOXD11P31277 338 aaPredicted RBP25.05■■□□□ 1.6
COL12A1-209ENST00000493109 CNKSR2Q8WXI2 1034 aa24.99■■□□□ 1.59
COL12A1-209ENST00000493109 DCAF8L1A6NGE4 600 aa24.86■■□□□ 1.57
COL12A1-209ENST00000493109 RNF216Q9NWF9 866 aaPredicted RBP24.79■■□□□ 1.56
COL12A1-209ENST00000493109 CACNB1Q02641 598 aaPredicted RBP24.56■■□□□ 1.52
COL12A1-209ENST00000493109 RNF39Q9H2S5 420 aa24.47■■□□□ 1.51
COL12A1-209ENST00000493109 NCBP3Q53F19 620 aaKnown RBP24.36■■□□□ 1.49
COL12A1-209ENST00000493109 NPM3O75607 178 aaKnown RBP24.19■■□□□ 1.46
COL12A1-209ENST00000493109 DNAJC5BQ9UF47 199 aa24.12■■□□□ 1.45
COL12A1-209ENST00000493109 C1QBPQ07021 282 aaKnown RBP24.02■■□□□ 1.44
COL12A1-209ENST00000493109 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.77■■□□□ 1.4
COL12A1-209ENST00000493109 KCNA4P22459 653 aa23.69■■□□□ 1.38
COL12A1-209ENST00000493109 U3KPZ7 1027 aaPredicted RBP23.39■■□□□ 1.33
COL12A1-209ENST00000493109 SLC4A2P04920 1241 aa23.17■■□□□ 1.3
COL12A1-209ENST00000493109 SPINK5Q9NQ38 1064 aaPredicted RBP23.08■■□□□ 1.29
COL12A1-209ENST00000493109 CAPN15O75808 1086 aa22.92■■□□□ 1.26
COL12A1-209ENST00000493109 DSG3P32926 999 aa22.9■■□□□ 1.26
COL12A1-209ENST00000493109 TRHP20396 242 aaPredicted RBP22.56■■□□□ 1.2
COL12A1-209ENST00000493109 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.48■■□□□ 1.19
COL12A1-209ENST00000493109 HNRNPUL2Q1KMD3 747 aaKnown RBP22.48■■□□□ 1.19
COL12A1-209ENST00000493109 ABCB7O75027 752 aa22.47■■□□□ 1.19
COL12A1-209ENST00000493109 APLP2Q06481 763 aa22.46■■□□□ 1.19
COL12A1-209ENST00000493109 ZNF219Q9P2Y4 722 aaPredicted RBP22.46■■□□□ 1.19
COL12A1-209ENST00000493109 SAMD1Q6SPF0 538 aaPredicted RBP22.41■■□□□ 1.18
COL12A1-209ENST00000493109 MYCNP04198 464 aaPredicted RBP22.28■■□□□ 1.16
COL12A1-209ENST00000493109 SLC4A1APQ9BWU0 796 aaKnown RBP22.26■■□□□ 1.15
COL12A1-209ENST00000493109 FOXD4L1Q9NU39 408 aa22.05■■□□□ 1.12
COL12A1-209ENST00000493109 POTEHQ6S545 545 aa21.99■■□□□ 1.11
COL12A1-209ENST00000493109 POLA2Q14181 598 aa21.96■■□□□ 1.11
COL12A1-209ENST00000493109 ATF5Q9Y2D1 282 aaPredicted RBP21.95■■□□□ 1.1
COL12A1-209ENST00000493109 ZBTB22O15209 634 aa21.87■■□□□ 1.09
COL12A1-209ENST00000493109 RBM42Q9BTD8 480 aaKnown RBP21.69■■□□□ 1.06
COL12A1-209ENST00000493109 ZBTB12Q9Y330 459 aaPredicted RBP21.38■■□□□ 1.01
COL12A1-209ENST00000493109 CHRDL2Q6WN34 429 aa21.34■■□□□ 1.01
COL12A1-209ENST00000493109 ATXN8OSP0DMR3 200 aa21.32■■□□□ 1
COL12A1-209ENST00000493109 OSCARQ8IYS5 282 aa21.31■■□□□ 1
COL12A1-209ENST00000493109 AKT1S1Q96B36 256 aa21.24■□□□□ 0.99
COL12A1-209ENST00000493109 REM2Q8IYK8 340 aaPredicted RBP21.1■□□□□ 0.97
COL12A1-209ENST00000493109 MKRN4PQ13434 485 aaPredicted RBP20.92■□□□□ 0.94
COL12A1-209ENST00000493109 PITPNM1O00562 1244 aa20.91■□□□□ 0.94
COL12A1-209ENST00000493109 PIP4P2Q8N4L2 257 aa20.87■□□□□ 0.93
COL12A1-209ENST00000493109 FBLN2P98095 1184 aa20.84■□□□□ 0.93
COL12A1-209ENST00000493109 SPDYE2BA6NHP3 402 aa20.8■□□□□ 0.92
COL12A1-209ENST00000493109 SPDYE6P0CI01 402 aa20.8■□□□□ 0.92
COL12A1-209ENST00000493109 SPDYE2Q495Y8 402 aa20.8■□□□□ 0.92
COL12A1-209ENST00000493109 FXR2P51116 673 aaKnown RBP eCLIP20.73■□□□□ 0.91
COL12A1-209ENST00000493109 CSRNP3Q8WYN3 585 aa20.73■□□□□ 0.91
COL12A1-209ENST00000493109 SSUH2Q9Y2M2 353 aa20.6■□□□□ 0.89
COL12A1-209ENST00000493109 SP7Q8TDD2 431 aaPredicted RBP20.57■□□□□ 0.88
COL12A1-209ENST00000493109 ZNF692Q9BU19 519 aaPredicted RBP20.53■□□□□ 0.88
COL12A1-209ENST00000493109 SPDYE1Q8NFV5 336 aaPredicted RBP20.42■□□□□ 0.86
COL12A1-209ENST00000493109 HAX1O00165 279 aa20.41■□□□□ 0.86
COL12A1-209ENST00000493109 CLEC11AQ9Y240 323 aa20.41■□□□□ 0.86
COL12A1-209ENST00000493109 EHMT2Q96KQ7 1210 aa20.37■□□□□ 0.85
COL12A1-209ENST00000493109 EVX2Q03828 476 aa20.35■□□□□ 0.85
COL12A1-209ENST00000493109 PRKAR2AP13861 404 aaKnown RBP20.32■□□□□ 0.84
COL12A1-209ENST00000493109 PABPN1Q86U42 306 aaKnown RBP eCLIP20.27■□□□□ 0.84
COL12A1-209ENST00000493109 CHADLQ6NUI6 762 aa20.14■□□□□ 0.81
COL12A1-209ENST00000493109 C19orf67A6NJJ6 358 aa20.07■□□□□ 0.8
COL12A1-209ENST00000493109 PRR29P0C7W0 189 aa20.04■□□□□ 0.8
COL12A1-209ENST00000493109 GABBR2O75899 941 aa19.78■□□□□ 0.76
COL12A1-209ENST00000493109 FARP1Q9Y4F1 1045 aaPredicted RBP19.77■□□□□ 0.76
COL12A1-209ENST00000493109 SPDYE4A6NLX3 237 aa19.76■□□□□ 0.75
COL12A1-209ENST00000493109 CD44P16070 742 aaKnown RBP19.66■□□□□ 0.74
COL12A1-209ENST00000493109 CREBZFQ9NS37 354 aa19.66■□□□□ 0.74
COL12A1-209ENST00000493109 STAG3Q9UJ98 1225 aa19.58■□□□□ 0.72
COL12A1-209ENST00000493109 POTEIP0CG38 1075 aa19.46■□□□□ 0.71
COL12A1-209ENST00000493109 PROM2Q8N271 834 aa19.38■□□□□ 0.69
COL12A1-209ENST00000493109 ZNF579Q8NAF0 562 aaKnown RBP19.38■□□□□ 0.69
COL12A1-209ENST00000493109 MNX1P50219 401 aaPredicted RBP19.36■□□□□ 0.69
COL12A1-209ENST00000493109 ZRANB1Q9UGI0 708 aa19.36■□□□□ 0.69
COL12A1-209ENST00000493109 LHX8Q68G74 356 aa19.27■□□□□ 0.68
COL12A1-209ENST00000493109 CLCN6P51797 869 aa19.26■□□□□ 0.67
COL12A1-209ENST00000493109 GALR2O43603 387 aaPredicted RBP19.2■□□□□ 0.66
COL12A1-209ENST00000493109 PHF12Q96QT6 1004 aa19.16■□□□□ 0.66
COL12A1-209ENST00000493109 NPM1P06748 294 aaKnown RBP eCLIP19.12■□□□□ 0.65
COL12A1-209ENST00000493109 DCBLD2Q96PD2 775 aa19.12■□□□□ 0.65
COL12A1-209ENST00000493109 PAK3O75914 559 aaPredicted RBP19.06■□□□□ 0.64
COL12A1-209ENST00000493109 MS4A3Q96HJ5 214 aa18.91■□□□□ 0.62
COL12A1-209ENST00000493109 TSPYL2Q9H2G4 693 aaPredicted RBP18.88■□□□□ 0.61
COL12A1-209ENST00000493109 PELP1Q8IZL8 1130 aaKnown RBP18.87■□□□□ 0.61
COL12A1-209ENST00000493109 CCDC61Q9Y6R9 512 aa18.86■□□□□ 0.61
COL12A1-209ENST00000493109 POTEB2H3BUK9 544 aa18.83■□□□□ 0.6
COL12A1-209ENST00000493109 MIER1Q8N108 512 aa18.8■□□□□ 0.6
COL12A1-209ENST00000493109 ASTLQ6HA08 431 aaPredicted RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms