RNA–Protein interactions for RNA: ENST00000491881.1

VTA1-204, Transcript of vesicle trafficking 1, humanhuman

TSL 2

Gene VTA1, Length 528 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-204ENST00000491881 AEBP2Q6ZN18 517 aaPredicted RBP25.06■■□□□ 1.6
VTA1-204ENST00000491881 CHIC1Q5VXU3 224 aa23.72■■□□□ 1.39
VTA1-204ENST00000491881 SENP3Q9H4L4 574 aaPredicted RBP21.43■■□□□ 1.02
VTA1-204ENST00000491881 PHF23Q9BUL5 403 aaPredicted RBP21.13■□□□□ 0.97
VTA1-204ENST00000491881 FOXD1Q16676 465 aa19.96■□□□□ 0.79
VTA1-204ENST00000491881 PLPPR3Q6T4P5 718 aa18.94■□□□□ 0.62
VTA1-204ENST00000491881 MSH5O43196 834 aa18.76■□□□□ 0.59
VTA1-204ENST00000491881 PIAS4Q8N2W9 510 aaPredicted RBP18.67■□□□□ 0.58
VTA1-204ENST00000491881 PPP6R1Q9UPN7 881 aa18.58■□□□□ 0.56
VTA1-204ENST00000491881 POTEDQ86YR6 584 aa18.55■□□□□ 0.56
VTA1-204ENST00000491881 ADRA2BP18089 450 aa18.53■□□□□ 0.56
VTA1-204ENST00000491881 MAPK8IP2Q13387 824 aaPredicted RBP17.05■□□□□ 0.32
VTA1-204ENST00000491881 SCAF1Q9H7N4 1312 aaKnown RBP17■□□□□ 0.31
VTA1-204ENST00000491881 DMRT2Q9Y5R5 561 aa16.96■□□□□ 0.31
VTA1-204ENST00000491881 PPP4R3CPQ6ZMV5 832 aa16.57■□□□□ 0.24
VTA1-204ENST00000491881 DCAF8L1A6NGE4 600 aa16.35■□□□□ 0.21
VTA1-204ENST00000491881 HOXD11P31277 338 aaPredicted RBP16.29■□□□□ 0.2
VTA1-204ENST00000491881 CNKSR2Q8WXI2 1034 aa16.29■□□□□ 0.2
VTA1-204ENST00000491881 CACNB1Q02641 598 aaPredicted RBP16.18■□□□□ 0.18
VTA1-204ENST00000491881 RNF216Q9NWF9 866 aaPredicted RBP16.16■□□□□ 0.18
VTA1-204ENST00000491881 RNF39Q9H2S5 420 aa15.97■□□□□ 0.15
VTA1-204ENST00000491881 NCBP3Q53F19 620 aaKnown RBP15.93■□□□□ 0.14
VTA1-204ENST00000491881 C1QBPQ07021 282 aaKnown RBP15.75■□□□□ 0.11
VTA1-204ENST00000491881 DNAJC5BQ9UF47 199 aa15.74■□□□□ 0.11
VTA1-204ENST00000491881 NPM3O75607 178 aaKnown RBP15.67■□□□□ 0.1
VTA1-204ENST00000491881 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.58■□□□□ 0.081e-6■■■□□ 15.7
VTA1-204ENST00000491881 KCNA4P22459 653 aa15.27■□□□□ 0.04
VTA1-204ENST00000491881 U3KPZ7 1027 aaPredicted RBP15.19■□□□□ 0.02
VTA1-204ENST00000491881 CAPN15O75808 1086 aa15.04■□□□□ -0
VTA1-204ENST00000491881 SPINK5Q9NQ38 1064 aaPredicted RBP15.01□□□□□ -0.01
VTA1-204ENST00000491881 SLC4A2P04920 1241 aa14.96□□□□□ -0.01
VTA1-204ENST00000491881 DSG3P32926 999 aa14.92□□□□□ -0.02
VTA1-204ENST00000491881 APLP2Q06481 763 aa14.82□□□□□ -0.04
VTA1-204ENST00000491881 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.78□□□□□ -0.04
VTA1-204ENST00000491881 HNRNPUL2Q1KMD3 747 aaKnown RBP14.78□□□□□ -0.04
VTA1-204ENST00000491881 TRHP20396 242 aaPredicted RBP14.77□□□□□ -0.05
VTA1-204ENST00000491881 ZNF219Q9P2Y4 722 aaPredicted RBP14.73□□□□□ -0.05
VTA1-204ENST00000491881 SAMD1Q6SPF0 538 aaPredicted RBP14.68□□□□□ -0.06
VTA1-204ENST00000491881 ABCB7O75027 752 aa14.66□□□□□ -0.06
VTA1-204ENST00000491881 MYCNP04198 464 aaPredicted RBP14.51□□□□□ -0.09
VTA1-204ENST00000491881 POTEHQ6S545 545 aa14.48□□□□□ -0.09
VTA1-204ENST00000491881 SLC4A1APQ9BWU0 796 aaKnown RBP14.42□□□□□ -0.1
VTA1-204ENST00000491881 POLA2Q14181 598 aa14.33□□□□□ -0.12
VTA1-204ENST00000491881 FOXD4L1Q9NU39 408 aa14.31□□□□□ -0.12
VTA1-204ENST00000491881 RBM42Q9BTD8 480 aaKnown RBP14.28□□□□□ -0.12
VTA1-204ENST00000491881 ATF5Q9Y2D1 282 aaPredicted RBP14.16□□□□□ -0.14
VTA1-204ENST00000491881 ZBTB12Q9Y330 459 aaPredicted RBP14.04□□□□□ -0.16
VTA1-204ENST00000491881 ZBTB22O15209 634 aa14.02□□□□□ -0.17
VTA1-204ENST00000491881 CHRDL2Q6WN34 429 aa13.99□□□□□ -0.17
VTA1-204ENST00000491881 AKT1S1Q96B36 256 aa13.91□□□□□ -0.18
VTA1-204ENST00000491881 OSCARQ8IYS5 282 aa13.87□□□□□ -0.19
VTA1-204ENST00000491881 ATXN8OSP0DMR3 200 aa13.86□□□□□ -0.19
VTA1-204ENST00000491881 REM2Q8IYK8 340 aaPredicted RBP13.77□□□□□ -0.21
VTA1-204ENST00000491881 FBLN2P98095 1184 aa13.67□□□□□ -0.22
VTA1-204ENST00000491881 PITPNM1O00562 1244 aa13.63□□□□□ -0.23
VTA1-204ENST00000491881 PIP4P2Q8N4L2 257 aa13.62□□□□□ -0.23
VTA1-204ENST00000491881 SPDYE2BA6NHP3 402 aa13.58□□□□□ -0.24
VTA1-204ENST00000491881 SPDYE6P0CI01 402 aa13.58□□□□□ -0.24
VTA1-204ENST00000491881 SPDYE2Q495Y8 402 aa13.58□□□□□ -0.24
VTA1-204ENST00000491881 FXR2P51116 673 aaKnown RBP eCLIP13.52□□□□□ -0.25
VTA1-204ENST00000491881 SP7Q8TDD2 431 aaPredicted RBP13.51□□□□□ -0.25
VTA1-204ENST00000491881 MKRN4PQ13434 485 aaPredicted RBP13.49□□□□□ -0.25
VTA1-204ENST00000491881 HAX1O00165 279 aa13.45□□□□□ -0.26
VTA1-204ENST00000491881 ZNF692Q9BU19 519 aaPredicted RBP13.43□□□□□ -0.26
VTA1-204ENST00000491881 CLEC11AQ9Y240 323 aa13.4□□□□□ -0.26
VTA1-204ENST00000491881 SPDYE1Q8NFV5 336 aaPredicted RBP13.39□□□□□ -0.27
VTA1-204ENST00000491881 SSUH2Q9Y2M2 353 aa13.37□□□□□ -0.27
VTA1-204ENST00000491881 PRKAR2AP13861 404 aaKnown RBP13.3□□□□□ -0.28
VTA1-204ENST00000491881 CSRNP3Q8WYN3 585 aa13.29□□□□□ -0.28
VTA1-204ENST00000491881 EVX2Q03828 476 aa13.25□□□□□ -0.29
VTA1-204ENST00000491881 PABPN1Q86U42 306 aaKnown RBP eCLIP13.21□□□□□ -0.29
VTA1-204ENST00000491881 PRR29P0C7W0 189 aa13.15□□□□□ -0.3
VTA1-204ENST00000491881 CHADLQ6NUI6 762 aa13.13□□□□□ -0.31
VTA1-204ENST00000491881 EHMT2Q96KQ7 1210 aa13.12□□□□□ -0.31
VTA1-204ENST00000491881 C19orf67A6NJJ6 358 aa13.09□□□□□ -0.31
VTA1-204ENST00000491881 GABBR2O75899 941 aa12.94□□□□□ -0.34
VTA1-204ENST00000491881 FARP1Q9Y4F1 1045 aaPredicted RBP12.91□□□□□ -0.34
VTA1-204ENST00000491881 CD44P16070 742 aaKnown RBP12.87□□□□□ -0.35
VTA1-204ENST00000491881 SPDYE4A6NLX3 237 aa12.85□□□□□ -0.35
VTA1-204ENST00000491881 STAG3Q9UJ98 1225 aa12.84□□□□□ -0.35
VTA1-204ENST00000491881 CREBZFQ9NS37 354 aa12.75□□□□□ -0.37
VTA1-204ENST00000491881 CLCN6P51797 869 aa12.71□□□□□ -0.37
VTA1-204ENST00000491881 LHX8Q68G74 356 aa12.68□□□□□ -0.38
VTA1-204ENST00000491881 ZRANB1Q9UGI0 708 aa12.68□□□□□ -0.38
VTA1-204ENST00000491881 POTEIP0CG38 1075 aa12.65□□□□□ -0.38
VTA1-204ENST00000491881 ZNF579Q8NAF0 562 aaKnown RBP12.64□□□□□ -0.39
VTA1-204ENST00000491881 DCBLD2Q96PD2 775 aa12.61□□□□□ -0.39
VTA1-204ENST00000491881 PAK3O75914 559 aaPredicted RBP12.59□□□□□ -0.39
VTA1-204ENST00000491881 NPM1P06748 294 aaKnown RBP eCLIP12.56□□□□□ -0.4
VTA1-204ENST00000491881 GALR2O43603 387 aaPredicted RBP12.5□□□□□ -0.41
VTA1-204ENST00000491881 MNX1P50219 401 aaPredicted RBP12.5□□□□□ -0.41
VTA1-204ENST00000491881 PHF12Q96QT6 1004 aa12.48□□□□□ -0.41
VTA1-204ENST00000491881 PROM2Q8N271 834 aa12.46□□□□□ -0.41
VTA1-204ENST00000491881 TSPYL2Q9H2G4 693 aaPredicted RBP12.33□□□□□ -0.44
VTA1-204ENST00000491881 PLEKHG5O94827 1062 aa12.32□□□□□ -0.44
VTA1-204ENST00000491881 MS4A3Q96HJ5 214 aa12.3□□□□□ -0.44
VTA1-204ENST00000491881 MIER1Q8N108 512 aa12.29□□□□□ -0.44
VTA1-204ENST00000491881 PELP1Q8IZL8 1130 aaKnown RBP12.25□□□□□ -0.45
VTA1-204ENST00000491881 POTEB2H3BUK9 544 aa12.24□□□□□ -0.45
VTA1-204ENST00000491881 CCDC61Q9Y6R9 512 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms