RNA–Protein interactions for RNA: ENST00000490883.1

SEMA3A-207, Transcript of semaphorin 3A, humanhuman

TSL 5

Gene SEMA3A, Length 237 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-207ENST00000490883 AEBP2Q6ZN18 517 aaPredicted RBP28.07■■■□□ 2.08
SEMA3A-207ENST00000490883 CHIC1Q5VXU3 224 aa26.62■■□□□ 1.85
SEMA3A-207ENST00000490883 SENP3Q9H4L4 574 aaPredicted RBP23.78■■□□□ 1.4
SEMA3A-207ENST00000490883 PHF23Q9BUL5 403 aaPredicted RBP23.57■■□□□ 1.36
SEMA3A-207ENST00000490883 FOXD1Q16676 465 aa22.27■■□□□ 1.16
SEMA3A-207ENST00000490883 PLPPR3Q6T4P5 718 aa21.25■□□□□ 0.99
SEMA3A-207ENST00000490883 PPP6R1Q9UPN7 881 aa20.94■□□□□ 0.94
SEMA3A-207ENST00000490883 ADRA2BP18089 450 aa20.87■□□□□ 0.93
SEMA3A-207ENST00000490883 PIAS4Q8N2W9 510 aaPredicted RBP20.8■□□□□ 0.92
SEMA3A-207ENST00000490883 MSH5O43196 834 aa20.68■□□□□ 0.9
SEMA3A-207ENST00000490883 POTEDQ86YR6 584 aa20.2■□□□□ 0.82
SEMA3A-207ENST00000490883 MAPK8IP2Q13387 824 aaPredicted RBP19.18■□□□□ 0.66
SEMA3A-207ENST00000490883 DMRT2Q9Y5R5 561 aa18.9■□□□□ 0.62
SEMA3A-207ENST00000490883 SCAF1Q9H7N4 1312 aaKnown RBP18.9■□□□□ 0.62
SEMA3A-207ENST00000490883 PPP4R3CPQ6ZMV5 832 aa18.7■□□□□ 0.58
SEMA3A-207ENST00000490883 CNKSR2Q8WXI2 1034 aa18.28■□□□□ 0.52
SEMA3A-207ENST00000490883 HOXD11P31277 338 aaPredicted RBP18.22■□□□□ 0.51
SEMA3A-207ENST00000490883 DCAF8L1A6NGE4 600 aa18.2■□□□□ 0.5
SEMA3A-207ENST00000490883 RNF216Q9NWF9 866 aaPredicted RBP18.08■□□□□ 0.48
SEMA3A-207ENST00000490883 NCBP3Q53F19 620 aaKnown RBP17.89■□□□□ 0.45
SEMA3A-207ENST00000490883 CACNB1Q02641 598 aaPredicted RBP17.79■□□□□ 0.44
SEMA3A-207ENST00000490883 NPM3O75607 178 aaKnown RBP17.76■□□□□ 0.43
SEMA3A-207ENST00000490883 RNF39Q9H2S5 420 aa17.72■□□□□ 0.43
SEMA3A-207ENST00000490883 KCNA4P22459 653 aa17.52■□□□□ 0.4
SEMA3A-207ENST00000490883 DNAJC5BQ9UF47 199 aa17.46■□□□□ 0.39
SEMA3A-207ENST00000490883 C1QBPQ07021 282 aaKnown RBP17.4■□□□□ 0.38
SEMA3A-207ENST00000490883 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.39■□□□□ 0.37
SEMA3A-207ENST00000490883 U3KPZ7 1027 aaPredicted RBP17.06■□□□□ 0.32
SEMA3A-207ENST00000490883 SLC4A2P04920 1241 aa16.97■□□□□ 0.31
SEMA3A-207ENST00000490883 SPINK5Q9NQ38 1064 aaPredicted RBP16.85■□□□□ 0.29
SEMA3A-207ENST00000490883 CAPN15O75808 1086 aa16.76■□□□□ 0.27
SEMA3A-207ENST00000490883 DSG3P32926 999 aa16.65■□□□□ 0.26
SEMA3A-207ENST00000490883 TRHP20396 242 aaPredicted RBP16.53■□□□□ 0.24
SEMA3A-207ENST00000490883 SLC4A1APQ9BWU0 796 aaKnown RBP16.49■□□□□ 0.23
SEMA3A-207ENST00000490883 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
SEMA3A-207ENST00000490883 ABCB7O75027 752 aa16.44■□□□□ 0.22
SEMA3A-207ENST00000490883 HNRNPUL2Q1KMD3 747 aaKnown RBP16.44■□□□□ 0.22
SEMA3A-207ENST00000490883 APLP2Q06481 763 aa16.39■□□□□ 0.21
SEMA3A-207ENST00000490883 SAMD1Q6SPF0 538 aaPredicted RBP16.39■□□□□ 0.21
SEMA3A-207ENST00000490883 ZNF219Q9P2Y4 722 aaPredicted RBP16.37■□□□□ 0.21
SEMA3A-207ENST00000490883 MYCNP04198 464 aaPredicted RBP16.34■□□□□ 0.21
SEMA3A-207ENST00000490883 FOXD4L1Q9NU39 408 aa16.23■□□□□ 0.19
SEMA3A-207ENST00000490883 ZBTB22O15209 634 aa16.14■□□□□ 0.17
SEMA3A-207ENST00000490883 ATF5Q9Y2D1 282 aaPredicted RBP16.13■□□□□ 0.17
SEMA3A-207ENST00000490883 POLA2Q14181 598 aa16.1■□□□□ 0.17
SEMA3A-207ENST00000490883 POTEHQ6S545 545 aa15.82■□□□□ 0.12
SEMA3A-207ENST00000490883 RBM42Q9BTD8 480 aaKnown RBP15.75■□□□□ 0.11
SEMA3A-207ENST00000490883 ATXN8OSP0DMR3 200 aa15.65■□□□□ 0.1
SEMA3A-207ENST00000490883 ZBTB12Q9Y330 459 aaPredicted RBP15.6■□□□□ 0.09
SEMA3A-207ENST00000490883 OSCARQ8IYS5 282 aa15.58■□□□□ 0.08
SEMA3A-207ENST00000490883 CHRDL2Q6WN34 429 aa15.48■□□□□ 0.07
SEMA3A-207ENST00000490883 AKT1S1Q96B36 256 aa15.45■□□□□ 0.06
SEMA3A-207ENST00000490883 CSRNP3Q8WYN3 585 aa15.43■□□□□ 0.06
SEMA3A-207ENST00000490883 REM2Q8IYK8 340 aaPredicted RBP15.37■□□□□ 0.05
SEMA3A-207ENST00000490883 MKRN4PQ13434 485 aaPredicted RBP15.34■□□□□ 0.05
SEMA3A-207ENST00000490883 FBLN2P98095 1184 aa15.3■□□□□ 0.04
SEMA3A-207ENST00000490883 EHMT2Q96KQ7 1210 aa15.29■□□□□ 0.04
SEMA3A-207ENST00000490883 PITPNM1O00562 1244 aa15.22■□□□□ 0.03
SEMA3A-207ENST00000490883 SPDYE2BA6NHP3 402 aa15.19■□□□□ 0.02
SEMA3A-207ENST00000490883 SPDYE6P0CI01 402 aa15.19■□□□□ 0.02
SEMA3A-207ENST00000490883 SPDYE2Q495Y8 402 aa15.19■□□□□ 0.02
SEMA3A-207ENST00000490883 PIP4P2Q8N4L2 257 aa15.16■□□□□ 0.02
SEMA3A-207ENST00000490883 ZNF692Q9BU19 519 aaPredicted RBP15.09■□□□□ 0.01
SEMA3A-207ENST00000490883 FXR2P51116 673 aaKnown RBP eCLIP15.04■□□□□ -0
SEMA3A-207ENST00000490883 SSUH2Q9Y2M2 353 aa15.03■□□□□ -0
SEMA3A-207ENST00000490883 CLEC11AQ9Y240 323 aa15□□□□□ -0.01
SEMA3A-207ENST00000490883 SPDYE1Q8NFV5 336 aaPredicted RBP14.91□□□□□ -0.02
SEMA3A-207ENST00000490883 PABPN1Q86U42 306 aaKnown RBP eCLIP14.89□□□□□ -0.03
SEMA3A-207ENST00000490883 HAX1O00165 279 aa14.86□□□□□ -0.03
SEMA3A-207ENST00000490883 SP7Q8TDD2 431 aaPredicted RBP14.84□□□□□ -0.03
SEMA3A-207ENST00000490883 PRKAR2AP13861 404 aaKnown RBP14.83□□□□□ -0.04
SEMA3A-207ENST00000490883 EVX2Q03828 476 aa14.8□□□□□ -0.04
SEMA3A-207ENST00000490883 CHADLQ6NUI6 762 aa14.75□□□□□ -0.05
SEMA3A-207ENST00000490883 PRR29P0C7W0 189 aa14.7□□□□□ -0.06
SEMA3A-207ENST00000490883 SPDYE4A6NLX3 237 aa14.59□□□□□ -0.07
SEMA3A-207ENST00000490883 C19orf67A6NJJ6 358 aa14.56□□□□□ -0.08
SEMA3A-207ENST00000490883 FARP1Q9Y4F1 1045 aaPredicted RBP14.45□□□□□ -0.1
SEMA3A-207ENST00000490883 CREBZFQ9NS37 354 aa14.39□□□□□ -0.11
SEMA3A-207ENST00000490883 GABBR2O75899 941 aa14.37□□□□□ -0.11
SEMA3A-207ENST00000490883 STAG3Q9UJ98 1225 aa14.37□□□□□ -0.11
SEMA3A-207ENST00000490883 CD44P16070 742 aaKnown RBP14.34□□□□□ -0.11
SEMA3A-207ENST00000490883 PROM2Q8N271 834 aa14.21□□□□□ -0.13
SEMA3A-207ENST00000490883 ZRANB1Q9UGI0 708 aa14.17□□□□□ -0.14
SEMA3A-207ENST00000490883 MNX1P50219 401 aaPredicted RBP14.15□□□□□ -0.14
SEMA3A-207ENST00000490883 POTEIP0CG38 1075 aa14.12□□□□□ -0.15
SEMA3A-207ENST00000490883 ZNF579Q8NAF0 562 aaKnown RBP14.08□□□□□ -0.16
SEMA3A-207ENST00000490883 NPM1P06748 294 aaKnown RBP eCLIP14.02□□□□□ -0.17
SEMA3A-207ENST00000490883 PHF12Q96QT6 1004 aa14.02□□□□□ -0.17
SEMA3A-207ENST00000490883 GALR2O43603 387 aaPredicted RBP14□□□□□ -0.17
SEMA3A-207ENST00000490883 FKBP8Q14318 412 aa13.97□□□□□ -0.17
SEMA3A-207ENST00000490883 PAK3O75914 559 aaPredicted RBP13.96□□□□□ -0.17
SEMA3A-207ENST00000490883 CLCN6P51797 869 aa13.96□□□□□ -0.17
SEMA3A-207ENST00000490883 LHX8Q68G74 356 aa13.95□□□□□ -0.18
SEMA3A-207ENST00000490883 DCBLD2Q96PD2 775 aa13.95□□□□□ -0.18
SEMA3A-207ENST00000490883 MIER1Q8N108 512 aa13.93□□□□□ -0.18
SEMA3A-207ENST00000490883 TSPYL2Q9H2G4 693 aaPredicted RBP13.91□□□□□ -0.18
SEMA3A-207ENST00000490883 PLCD3Q8N3E9 789 aa13.81□□□□□ -0.2
SEMA3A-207ENST00000490883 MS4A3Q96HJ5 214 aa13.81□□□□□ -0.2
SEMA3A-207ENST00000490883 RASEFQ8IZ41 740 aa13.79□□□□□ -0.2
SEMA3A-207ENST00000490883 CCDC61Q9Y6R9 512 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms