RNA–Protein interactions for RNA: ENST00000490539.1

CSTF1-205, Transcript of cleavage stimulation factor subunit 1, humanhuman

TSL 5

Gene CSTF1, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-205ENST00000490539 AEBP2Q6ZN18 517 aaPredicted RBP22.43■■□□□ 1.18
CSTF1-205ENST00000490539 CHIC1Q5VXU3 224 aa21.04■□□□□ 0.96
CSTF1-205ENST00000490539 SENP3Q9H4L4 574 aaPredicted RBP19.25■□□□□ 0.67
CSTF1-205ENST00000490539 PHF23Q9BUL5 403 aaPredicted RBP18.94■□□□□ 0.62
CSTF1-205ENST00000490539 FOXD1Q16676 465 aa17.95■□□□□ 0.46
CSTF1-205ENST00000490539 POTEDQ86YR6 584 aa17.11■□□□□ 0.33
CSTF1-205ENST00000490539 MSH5O43196 834 aa16.98■□□□□ 0.31
CSTF1-205ENST00000490539 PIAS4Q8N2W9 510 aaPredicted RBP16.72■□□□□ 0.27
CSTF1-205ENST00000490539 PLPPR3Q6T4P5 718 aa16.67■□□□□ 0.26
CSTF1-205ENST00000490539 PPP6R1Q9UPN7 881 aa16.5■□□□□ 0.23
CSTF1-205ENST00000490539 ADRA2BP18089 450 aa16.44■□□□□ 0.22
CSTF1-205ENST00000490539 MAPK8IP2Q13387 824 aaPredicted RBP15.2■□□□□ 0.02
CSTF1-205ENST00000490539 DMRT2Q9Y5R5 561 aa15.2■□□□□ 0.02
CSTF1-205ENST00000490539 SCAF1Q9H7N4 1312 aaKnown RBP15.12■□□□□ 0.01
CSTF1-205ENST00000490539 CACNB1Q02641 598 aaPredicted RBP14.78□□□□□ -0.04
CSTF1-205ENST00000490539 DCAF8L1A6NGE4 600 aa14.63□□□□□ -0.07
CSTF1-205ENST00000490539 PPP4R3CPQ6ZMV5 832 aa14.55□□□□□ -0.08
CSTF1-205ENST00000490539 HOXD11P31277 338 aaPredicted RBP14.5□□□□□ -0.09
CSTF1-205ENST00000490539 RNF39Q9H2S5 420 aa14.42□□□□□ -0.1
CSTF1-205ENST00000490539 CNKSR2Q8WXI2 1034 aa14.37□□□□□ -0.11
CSTF1-205ENST00000490539 RNF216Q9NWF9 866 aaPredicted RBP14.32□□□□□ -0.12
CSTF1-205ENST00000490539 C1QBPQ07021 282 aaKnown RBP14.22□□□□□ -0.13
CSTF1-205ENST00000490539 DNAJC5BQ9UF47 199 aa14.09□□□□□ -0.15
CSTF1-205ENST00000490539 NCBP3Q53F19 620 aaKnown RBP13.93□□□□□ -0.18
CSTF1-205ENST00000490539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.85□□□□□ -0.194e-7■■■■□ 22.7
CSTF1-205ENST00000490539 NPM3O75607 178 aaKnown RBP13.67□□□□□ -0.22
CSTF1-205ENST00000490539 KCNA4P22459 653 aa13.53□□□□□ -0.24
CSTF1-205ENST00000490539 U3KPZ7 1027 aaPredicted RBP13.49□□□□□ -0.25
CSTF1-205ENST00000490539 CAPN15O75808 1086 aa13.42□□□□□ -0.26
CSTF1-205ENST00000490539 DSG3P32926 999 aa13.39□□□□□ -0.27
CSTF1-205ENST00000490539 SPINK5Q9NQ38 1064 aaPredicted RBP13.39□□□□□ -0.27
CSTF1-205ENST00000490539 POTEHQ6S545 545 aa13.35□□□□□ -0.27
CSTF1-205ENST00000490539 APLP2Q06481 763 aa13.16□□□□□ -0.3
CSTF1-205ENST00000490539 SLC4A2P04920 1241 aa13.13□□□□□ -0.31
CSTF1-205ENST00000490539 TRHP20396 242 aaPredicted RBP13.12□□□□□ -0.31
CSTF1-205ENST00000490539 ZNF219Q9P2Y4 722 aaPredicted RBP13.1□□□□□ -0.31
CSTF1-205ENST00000490539 ABCB7O75027 752 aa13.06□□□□□ -0.32
CSTF1-205ENST00000490539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.05□□□□□ -0.32
CSTF1-205ENST00000490539 HNRNPUL2Q1KMD3 747 aaKnown RBP13.05□□□□□ -0.32
CSTF1-205ENST00000490539 SLC4A1APQ9BWU0 796 aaKnown RBP12.95□□□□□ -0.34
CSTF1-205ENST00000490539 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
CSTF1-205ENST00000490539 RBM42Q9BTD8 480 aaKnown RBP12.84□□□□□ -0.35
CSTF1-205ENST00000490539 MYCNP04198 464 aaPredicted RBP12.68□□□□□ -0.38
CSTF1-205ENST00000490539 POLA2Q14181 598 aa12.68□□□□□ -0.38
CSTF1-205ENST00000490539 CHRDL2Q6WN34 429 aa12.66□□□□□ -0.38
CSTF1-205ENST00000490539 FOXD4L1Q9NU39 408 aa12.55□□□□□ -0.4
CSTF1-205ENST00000490539 EHMT2Q96KQ7 1210 aa12.46□□□□□ -0.41
CSTF1-205ENST00000490539 AKT1S1Q96B36 256 aa12.44□□□□□ -0.42
CSTF1-205ENST00000490539 ZBTB12Q9Y330 459 aaPredicted RBP12.44□□□□□ -0.42
CSTF1-205ENST00000490539 ZBTB22O15209 634 aa12.37□□□□□ -0.43
CSTF1-205ENST00000490539 ATF5Q9Y2D1 282 aaPredicted RBP12.37□□□□□ -0.43
CSTF1-205ENST00000490539 SP7Q8TDD2 431 aaPredicted RBP12.36□□□□□ -0.43
CSTF1-205ENST00000490539 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
CSTF1-205ENST00000490539 CSRNP3Q8WYN3 585 aa12.3□□□□□ -0.44
CSTF1-205ENST00000490539 OSCARQ8IYS5 282 aa12.28□□□□□ -0.44
CSTF1-205ENST00000490539 PIP4P2Q8N4L2 257 aa12.28□□□□□ -0.44
CSTF1-205ENST00000490539 PITPNM1O00562 1244 aa12.18□□□□□ -0.46
CSTF1-205ENST00000490539 HAX1O00165 279 aa12.17□□□□□ -0.46
CSTF1-205ENST00000490539 ATXN8OSP0DMR3 200 aa12.16□□□□□ -0.46
CSTF1-205ENST00000490539 FXR2P51116 673 aaKnown RBP eCLIP12.14□□□□□ -0.47
CSTF1-205ENST00000490539 SPDYE2BA6NHP3 402 aa12□□□□□ -0.49
CSTF1-205ENST00000490539 SPDYE6P0CI01 402 aa12□□□□□ -0.49
CSTF1-205ENST00000490539 SPDYE2Q495Y8 402 aa12□□□□□ -0.49
CSTF1-205ENST00000490539 FBLN2P98095 1184 aa11.98□□□□□ -0.49
CSTF1-205ENST00000490539 EVX2Q03828 476 aa11.93□□□□□ -0.5
CSTF1-205ENST00000490539 PRKAR2AP13861 404 aaKnown RBP11.88□□□□□ -0.51
CSTF1-205ENST00000490539 SPDYE1Q8NFV5 336 aaPredicted RBP11.88□□□□□ -0.51
CSTF1-205ENST00000490539 CLEC11AQ9Y240 323 aa11.88□□□□□ -0.51
CSTF1-205ENST00000490539 ZNF692Q9BU19 519 aaPredicted RBP11.81□□□□□ -0.52
CSTF1-205ENST00000490539 MKRN4PQ13434 485 aaPredicted RBP11.78□□□□□ -0.52
CSTF1-205ENST00000490539 C19orf67A6NJJ6 358 aa11.77□□□□□ -0.53
CSTF1-205ENST00000490539 SSUH2Q9Y2M2 353 aa11.77□□□□□ -0.53
CSTF1-205ENST00000490539 GABBR2O75899 941 aa11.69□□□□□ -0.54
CSTF1-205ENST00000490539 CHADLQ6NUI6 762 aa11.66□□□□□ -0.54
CSTF1-205ENST00000490539 PRR29P0C7W0 189 aa11.64□□□□□ -0.55
CSTF1-205ENST00000490539 PABPN1Q86U42 306 aaKnown RBP eCLIP11.61□□□□□ -0.55
CSTF1-205ENST00000490539 LHX8Q68G74 356 aa11.6□□□□□ -0.55
CSTF1-205ENST00000490539 CD44P16070 742 aaKnown RBP11.49□□□□□ -0.57
CSTF1-205ENST00000490539 FARP1Q9Y4F1 1045 aaPredicted RBP11.46□□□□□ -0.57
CSTF1-205ENST00000490539 CLCN6P51797 869 aa11.43□□□□□ -0.58
CSTF1-205ENST00000490539 POTEIP0CG38 1075 aa11.4□□□□□ -0.58
CSTF1-205ENST00000490539 DCBLD2Q96PD2 775 aa11.34□□□□□ -0.59
CSTF1-205ENST00000490539 SPDYE4A6NLX3 237 aa11.28□□□□□ -0.6
CSTF1-205ENST00000490539 ZNF579Q8NAF0 562 aaKnown RBP11.28□□□□□ -0.6
CSTF1-205ENST00000490539 ZRANB1Q9UGI0 708 aa11.28□□□□□ -0.6
CSTF1-205ENST00000490539 STAG3Q9UJ98 1225 aa11.25□□□□□ -0.61
CSTF1-205ENST00000490539 CREBZFQ9NS37 354 aa11.23□□□□□ -0.61
CSTF1-205ENST00000490539 FKBP8Q14318 412 aa11.19□□□□□ -0.62
CSTF1-205ENST00000490539 PLSCR2Q9NRY7 297 aa11.19□□□□□ -0.62
CSTF1-205ENST00000490539 GALR2O43603 387 aaPredicted RBP11.16□□□□□ -0.62
CSTF1-205ENST00000490539 PAK3O75914 559 aaPredicted RBP11.15□□□□□ -0.62
CSTF1-205ENST00000490539 NPM1P06748 294 aaKnown RBP eCLIP11.07□□□□□ -0.64
CSTF1-205ENST00000490539 OTUD5Q96G74 571 aa11.06□□□□□ -0.64
CSTF1-205ENST00000490539 PHF12Q96QT6 1004 aa11.06□□□□□ -0.64
CSTF1-205ENST00000490539 POTEB2H3BUK9 544 aa11.01□□□□□ -0.65
CSTF1-205ENST00000490539 PROM2Q8N271 834 aa10.99□□□□□ -0.65
CSTF1-205ENST00000490539 MNX1P50219 401 aaPredicted RBP10.98□□□□□ -0.65
CSTF1-205ENST00000490539 PELP1Q8IZL8 1130 aaKnown RBP10.96□□□□□ -0.65
CSTF1-205ENST00000490539 FBXO3Q9UK99 471 aa10.94□□□□□ -0.66
CSTF1-205ENST00000490539 POTEMA6NI47 508 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms