RNA–Protein interactions for RNA: ENST00000490435.5

ITGA4-211, Transcript of integrin subunit alpha 4, humanhuman

TSL 5

Gene ITGA4, Length 720 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-211ENST00000490435 AEBP2Q6ZN18 517 aaPredicted RBP32.79■■■□□ 2.84
ITGA4-211ENST00000490435 CHIC1Q5VXU3 224 aa31.22■■■□□ 2.59
ITGA4-211ENST00000490435 SENP3Q9H4L4 574 aaPredicted RBP28.04■■■□□ 2.08
ITGA4-211ENST00000490435 PHF23Q9BUL5 403 aaPredicted RBP27.66■■■□□ 2.02
ITGA4-211ENST00000490435 FOXD1Q16676 465 aa26.09■■□□□ 1.77
ITGA4-211ENST00000490435 PLPPR3Q6T4P5 718 aa24.99■■□□□ 1.59
ITGA4-211ENST00000490435 POTEDQ86YR6 584 aa24.95■■□□□ 1.58
ITGA4-211ENST00000490435 MSH5O43196 834 aa24.46■■□□□ 1.51
ITGA4-211ENST00000490435 PIAS4Q8N2W9 510 aaPredicted RBP24.41■■□□□ 1.5
ITGA4-211ENST00000490435 PPP6R1Q9UPN7 881 aa24.39■■□□□ 1.49
ITGA4-211ENST00000490435 ADRA2BP18089 450 aa24.33■■□□□ 1.49
ITGA4-211ENST00000490435 SCAF1Q9H7N4 1312 aaKnown RBP22.36■■□□□ 1.17
ITGA4-211ENST00000490435 MAPK8IP2Q13387 824 aaPredicted RBP22.33■■□□□ 1.17
ITGA4-211ENST00000490435 DMRT2Q9Y5R5 561 aa22.23■■□□□ 1.15
ITGA4-211ENST00000490435 PPP4R3CPQ6ZMV5 832 aa21.88■■□□□ 1.09
ITGA4-211ENST00000490435 CNKSR2Q8WXI2 1034 aa21.48■■□□□ 1.03
ITGA4-211ENST00000490435 HOXD11P31277 338 aaPredicted RBP21.42■■□□□ 1.02
ITGA4-211ENST00000490435 DCAF8L1A6NGE4 600 aa21.33■■□□□ 1.01
ITGA4-211ENST00000490435 RNF216Q9NWF9 866 aaPredicted RBP21.28■■□□□ 1
ITGA4-211ENST00000490435 NCBP3Q53F19 620 aaKnown RBP21.11■□□□□ 0.97
ITGA4-211ENST00000490435 CACNB1Q02641 598 aaPredicted RBP21■□□□□ 0.95
ITGA4-211ENST00000490435 RNF39Q9H2S5 420 aa20.84■□□□□ 0.93
ITGA4-211ENST00000490435 NPM3O75607 178 aaKnown RBP20.74■□□□□ 0.91
ITGA4-211ENST00000490435 DNAJC5BQ9UF47 199 aa20.71■□□□□ 0.91
ITGA4-211ENST00000490435 C1QBPQ07021 282 aaKnown RBP20.58■□□□□ 0.89
ITGA4-211ENST00000490435 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.44■□□□□ 0.86
ITGA4-211ENST00000490435 KCNA4P22459 653 aa20.36■□□□□ 0.85
ITGA4-211ENST00000490435 U3KPZ7 1027 aaPredicted RBP19.97■□□□□ 0.79
ITGA4-211ENST00000490435 SLC4A2P04920 1241 aa19.78■□□□□ 0.76
ITGA4-211ENST00000490435 CAPN15O75808 1086 aa19.68■□□□□ 0.74
ITGA4-211ENST00000490435 SPINK5Q9NQ38 1064 aaPredicted RBP19.66■□□□□ 0.74
ITGA4-211ENST00000490435 DSG3P32926 999 aa19.52■□□□□ 0.72
ITGA4-211ENST00000490435 APLP2Q06481 763 aa19.52■□□□□ 0.72
ITGA4-211ENST00000490435 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.49■□□□□ 0.71
ITGA4-211ENST00000490435 HNRNPUL2Q1KMD3 747 aaKnown RBP19.49■□□□□ 0.71
ITGA4-211ENST00000490435 SAMD1Q6SPF0 538 aaPredicted RBP19.37■□□□□ 0.69
ITGA4-211ENST00000490435 TRHP20396 242 aaPredicted RBP19.36■□□□□ 0.69
ITGA4-211ENST00000490435 POTEHQ6S545 545 aa19.36■□□□□ 0.69
ITGA4-211ENST00000490435 ZNF219Q9P2Y4 722 aaPredicted RBP19.35■□□□□ 0.69
ITGA4-211ENST00000490435 SLC4A1APQ9BWU0 796 aaKnown RBP19.26■□□□□ 0.67
ITGA4-211ENST00000490435 MYCNP04198 464 aaPredicted RBP19.21■□□□□ 0.67
ITGA4-211ENST00000490435 ABCB7O75027 752 aa19.19■□□□□ 0.66
ITGA4-211ENST00000490435 FOXD4L1Q9NU39 408 aa19.03■□□□□ 0.64
ITGA4-211ENST00000490435 POLA2Q14181 598 aa18.85■□□□□ 0.61
ITGA4-211ENST00000490435 ATF5Q9Y2D1 282 aaPredicted RBP18.7■□□□□ 0.58
ITGA4-211ENST00000490435 ZBTB22O15209 634 aa18.69■□□□□ 0.58
ITGA4-211ENST00000490435 RBM42Q9BTD8 480 aaKnown RBP18.69■□□□□ 0.58
ITGA4-211ENST00000490435 ZBTB12Q9Y330 459 aaPredicted RBP18.52■□□□□ 0.56
ITGA4-211ENST00000490435 ATXN8OSP0DMR3 200 aa18.46■□□□□ 0.55
ITGA4-211ENST00000490435 AKT1S1Q96B36 256 aa18.24■□□□□ 0.51
ITGA4-211ENST00000490435 CHRDL2Q6WN34 429 aa18.23■□□□□ 0.51
ITGA4-211ENST00000490435 OSCARQ8IYS5 282 aa18.22■□□□□ 0.51
ITGA4-211ENST00000490435 FBLN2P98095 1184 aa18.06■□□□□ 0.48
ITGA4-211ENST00000490435 REM2Q8IYK8 340 aaPredicted RBP18.05■□□□□ 0.48
ITGA4-211ENST00000490435 SPDYE2BA6NHP3 402 aa17.92■□□□□ 0.46
ITGA4-211ENST00000490435 SPDYE6P0CI01 402 aa17.92■□□□□ 0.46
ITGA4-211ENST00000490435 SPDYE2Q495Y8 402 aa17.92■□□□□ 0.46
ITGA4-211ENST00000490435 CSRNP3Q8WYN3 585 aa17.88■□□□□ 0.45
ITGA4-211ENST00000490435 MKRN4PQ13434 485 aaPredicted RBP17.86■□□□□ 0.45
ITGA4-211ENST00000490435 PITPNM1O00562 1244 aa17.84■□□□□ 0.45
ITGA4-211ENST00000490435 PIP4P2Q8N4L2 257 aa17.78■□□□□ 0.44
ITGA4-211ENST00000490435 ZNF692Q9BU19 519 aaPredicted RBP17.71■□□□□ 0.43
ITGA4-211ENST00000490435 FXR2P51116 673 aaKnown RBP eCLIP17.69■□□□□ 0.42
ITGA4-211ENST00000490435 EHMT2Q96KQ7 1210 aa17.68■□□□□ 0.42
ITGA4-211ENST00000490435 SSUH2Q9Y2M2 353 aa17.65■□□□□ 0.42
ITGA4-211ENST00000490435 SP7Q8TDD2 431 aaPredicted RBP17.61■□□□□ 0.41
ITGA4-211ENST00000490435 SPDYE1Q8NFV5 336 aaPredicted RBP17.6■□□□□ 0.41
ITGA4-211ENST00000490435 CLEC11AQ9Y240 323 aa17.56■□□□□ 0.4
ITGA4-211ENST00000490435 HAX1O00165 279 aa17.49■□□□□ 0.39
ITGA4-211ENST00000490435 PABPN1Q86U42 306 aaKnown RBP eCLIP17.43■□□□□ 0.38
ITGA4-211ENST00000490435 PRKAR2AP13861 404 aaKnown RBP17.4■□□□□ 0.38
ITGA4-211ENST00000490435 PRR29P0C7W0 189 aa17.29■□□□□ 0.36
ITGA4-211ENST00000490435 EVX2Q03828 476 aa17.2■□□□□ 0.34
ITGA4-211ENST00000490435 CHADLQ6NUI6 762 aa17.19■□□□□ 0.34
ITGA4-211ENST00000490435 C19orf67A6NJJ6 358 aa17.12■□□□□ 0.33
ITGA4-211ENST00000490435 SPDYE4A6NLX3 237 aa17.08■□□□□ 0.32
ITGA4-211ENST00000490435 STAG3Q9UJ98 1225 aa17.01■□□□□ 0.31
ITGA4-211ENST00000490435 FARP1Q9Y4F1 1045 aaPredicted RBP16.97■□□□□ 0.31
ITGA4-211ENST00000490435 GABBR2O75899 941 aa16.86■□□□□ 0.29
ITGA4-211ENST00000490435 CD44P16070 742 aaKnown RBP16.86■□□□□ 0.29
ITGA4-211ENST00000490435 CREBZFQ9NS37 354 aa16.82■□□□□ 0.28
ITGA4-211ENST00000490435 CLCN6P51797 869 aa16.68■□□□□ 0.26
ITGA4-211ENST00000490435 PROM2Q8N271 834 aa16.64■□□□□ 0.25
ITGA4-211ENST00000490435 ZRANB1Q9UGI0 708 aa16.63■□□□□ 0.25
ITGA4-211ENST00000490435 ZNF579Q8NAF0 562 aaKnown RBP16.6■□□□□ 0.25
ITGA4-211ENST00000490435 NPM1P06748 294 aaKnown RBP eCLIP16.58■□□□□ 0.24
ITGA4-211ENST00000490435 PAK3O75914 559 aaPredicted RBP16.54■□□□□ 0.24
ITGA4-211ENST00000490435 MNX1P50219 401 aaPredicted RBP16.52■□□□□ 0.24
ITGA4-211ENST00000490435 LHX8Q68G74 356 aa16.52■□□□□ 0.24
ITGA4-211ENST00000490435 PLSCR2Q9NRY7 297 aa16.48■□□□□ 0.23
ITGA4-211ENST00000490435 POTEIP0CG38 1075 aa16.47■□□□□ 0.23
ITGA4-211ENST00000490435 DCBLD2Q96PD2 775 aa16.46■□□□□ 0.23
ITGA4-211ENST00000490435 PHF12Q96QT6 1004 aa16.37■□□□□ 0.21
ITGA4-211ENST00000490435 GALR2O43603 387 aaPredicted RBP16.36■□□□□ 0.21
ITGA4-211ENST00000490435 PLEKHG5O94827 1062 aa16.34■□□□□ 0.21
ITGA4-211ENST00000490435 MIER1Q8N108 512 aa16.31■□□□□ 0.2
ITGA4-211ENST00000490435 FKBP8Q14318 412 aa16.24■□□□□ 0.19
ITGA4-211ENST00000490435 TSPYL2Q9H2G4 693 aaPredicted RBP16.24■□□□□ 0.19
ITGA4-211ENST00000490435 PLCD3Q8N3E9 789 aa16.19■□□□□ 0.18
ITGA4-211ENST00000490435 MS4A3Q96HJ5 214 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms