RNA–Protein interactions for RNA: ENST00000490399.5

PRPF4B-207, Transcript of pre-mRNA processing factor 4B, humanhuman

TSL 2

Gene PRPF4B, Length 576 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4B-207ENST00000490399 AEBP2Q6ZN18 517 aaPredicted RBP25.13■■□□□ 1.61
PRPF4B-207ENST00000490399 CHIC1Q5VXU3 224 aa24.09■■□□□ 1.45
PRPF4B-207ENST00000490399 SENP3Q9H4L4 574 aaPredicted RBP21.35■■□□□ 1.01
PRPF4B-207ENST00000490399 PHF23Q9BUL5 403 aaPredicted RBP21.16■□□□□ 0.98
PRPF4B-207ENST00000490399 FOXD1Q16676 465 aa19.91■□□□□ 0.78
PRPF4B-207ENST00000490399 PLPPR3Q6T4P5 718 aa19.36■□□□□ 0.69
PRPF4B-207ENST00000490399 PPP6R1Q9UPN7 881 aa18.82■□□□□ 0.6
PRPF4B-207ENST00000490399 ADRA2BP18089 450 aa18.79■□□□□ 0.6
PRPF4B-207ENST00000490399 PIAS4Q8N2W9 510 aaPredicted RBP18.68■□□□□ 0.58
PRPF4B-207ENST00000490399 MSH5O43196 834 aa18.49■□□□□ 0.55
PRPF4B-207ENST00000490399 POTEDQ86YR6 584 aa17.63■□□□□ 0.41
PRPF4B-207ENST00000490399 MAPK8IP2Q13387 824 aaPredicted RBP17.18■□□□□ 0.34
PRPF4B-207ENST00000490399 SCAF1Q9H7N4 1312 aaKnown RBP17.12■□□□□ 0.33
PRPF4B-207ENST00000490399 PPP4R3CPQ6ZMV5 832 aa17.02■□□□□ 0.32
PRPF4B-207ENST00000490399 DMRT2Q9Y5R5 561 aa16.98■□□□□ 0.31
PRPF4B-207ENST00000490399 CNKSR2Q8WXI2 1034 aa16.62■□□□□ 0.25
PRPF4B-207ENST00000490399 HOXD11P31277 338 aaPredicted RBP16.44■□□□□ 0.22
PRPF4B-207ENST00000490399 NCBP3Q53F19 620 aaKnown RBP16.41■□□□□ 0.22
PRPF4B-207ENST00000490399 RNF216Q9NWF9 866 aaPredicted RBP16.39■□□□□ 0.21
PRPF4B-207ENST00000490399 DCAF8L1A6NGE4 600 aa16.34■□□□□ 0.21
PRPF4B-207ENST00000490399 NPM3O75607 178 aaKnown RBP16.23■□□□□ 0.19
PRPF4B-207ENST00000490399 KCNA4P22459 653 aa16.21■□□□□ 0.19
PRPF4B-207ENST00000490399 RNF39Q9H2S5 420 aa15.81■□□□□ 0.12
PRPF4B-207ENST00000490399 DNAJC5BQ9UF47 199 aa15.76■□□□□ 0.11
PRPF4B-207ENST00000490399 CACNB1Q02641 598 aaPredicted RBP15.73■□□□□ 0.11
PRPF4B-207ENST00000490399 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.7■□□□□ 0.11e-8■■■□□ 16.2
PRPF4B-207ENST00000490399 C1QBPQ07021 282 aaKnown RBP15.57■□□□□ 0.08
PRPF4B-207ENST00000490399 SLC4A1APQ9BWU0 796 aaKnown RBP15.43■□□□□ 0.06
PRPF4B-207ENST00000490399 SLC4A2P04920 1241 aa15.42■□□□□ 0.06
PRPF4B-207ENST00000490399 U3KPZ7 1027 aaPredicted RBP15.41■□□□□ 0.06
PRPF4B-207ENST00000490399 EHMT2Q96KQ7 1210 aa15.24■□□□□ 0.03
PRPF4B-207ENST00000490399 SPINK5Q9NQ38 1064 aaPredicted RBP15.13■□□□□ 0.01
PRPF4B-207ENST00000490399 CAPN15O75808 1086 aa15.09■□□□□ 0.01
PRPF4B-207ENST00000490399 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.01□□□□□ -0.01
PRPF4B-207ENST00000490399 HNRNPUL2Q1KMD3 747 aaKnown RBP15.01□□□□□ -0.01
PRPF4B-207ENST00000490399 MYCNP04198 464 aaPredicted RBP14.98□□□□□ -0.01
PRPF4B-207ENST00000490399 FOXD4L1Q9NU39 408 aa14.98□□□□□ -0.01
PRPF4B-207ENST00000490399 CSRNP3Q8WYN3 585 aa14.96□□□□□ -0.01
PRPF4B-207ENST00000490399 ZBTB22O15209 634 aa14.95□□□□□ -0.02
PRPF4B-207ENST00000490399 APLP2Q06481 763 aa14.95□□□□□ -0.02
PRPF4B-207ENST00000490399 SAMD1Q6SPF0 538 aaPredicted RBP14.95□□□□□ -0.02
PRPF4B-207ENST00000490399 TRHP20396 242 aaPredicted RBP14.91□□□□□ -0.02
PRPF4B-207ENST00000490399 DSG3P32926 999 aa14.91□□□□□ -0.02
PRPF4B-207ENST00000490399 ZNF219Q9P2Y4 722 aaPredicted RBP14.84□□□□□ -0.03
PRPF4B-207ENST00000490399 ABCB7O75027 752 aa14.78□□□□□ -0.04
PRPF4B-207ENST00000490399 ATF5Q9Y2D1 282 aaPredicted RBP14.66□□□□□ -0.06
PRPF4B-207ENST00000490399 POLA2Q14181 598 aa14.55□□□□□ -0.08
PRPF4B-207ENST00000490399 ATXN8OSP0DMR3 200 aa14.44□□□□□ -0.1
PRPF4B-207ENST00000490399 ZBTB12Q9Y330 459 aaPredicted RBP14.24□□□□□ -0.13
PRPF4B-207ENST00000490399 RBM42Q9BTD8 480 aaKnown RBP14.19□□□□□ -0.14
PRPF4B-207ENST00000490399 OSCARQ8IYS5 282 aa14.11□□□□□ -0.15
PRPF4B-207ENST00000490399 FBLN2P98095 1184 aa14.03□□□□□ -0.16
PRPF4B-207ENST00000490399 MKRN4PQ13434 485 aaPredicted RBP13.99□□□□□ -0.17
PRPF4B-207ENST00000490399 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
PRPF4B-207ENST00000490399 POTEHQ6S545 545 aa13.86□□□□□ -0.19
PRPF4B-207ENST00000490399 SPDYE2BA6NHP3 402 aa13.82□□□□□ -0.2
PRPF4B-207ENST00000490399 SPDYE6P0CI01 402 aa13.82□□□□□ -0.2
PRPF4B-207ENST00000490399 SPDYE2Q495Y8 402 aa13.82□□□□□ -0.2
PRPF4B-207ENST00000490399 REM2Q8IYK8 340 aaPredicted RBP13.82□□□□□ -0.2
PRPF4B-207ENST00000490399 CHRDL2Q6WN34 429 aa13.8□□□□□ -0.2
PRPF4B-207ENST00000490399 ZNF692Q9BU19 519 aaPredicted RBP13.73□□□□□ -0.21
PRPF4B-207ENST00000490399 PITPNM1O00562 1244 aa13.69□□□□□ -0.22
PRPF4B-207ENST00000490399 SSUH2Q9Y2M2 353 aa13.69□□□□□ -0.22
PRPF4B-207ENST00000490399 PABPN1Q86U42 306 aaKnown RBP eCLIP13.56□□□□□ -0.24
PRPF4B-207ENST00000490399 PIP4P2Q8N4L2 257 aa13.54□□□□□ -0.24
PRPF4B-207ENST00000490399 CLEC11AQ9Y240 323 aa13.54□□□□□ -0.24
PRPF4B-207ENST00000490399 SPDYE1Q8NFV5 336 aaPredicted RBP13.53□□□□□ -0.24
PRPF4B-207ENST00000490399 FKBP8Q14318 412 aa13.51□□□□□ -0.25
PRPF4B-207ENST00000490399 FXR2P51116 673 aaKnown RBP eCLIP13.47□□□□□ -0.252e-9■■□□□ 14.2
PRPF4B-207ENST00000490399 SPDYE4A6NLX3 237 aa13.45□□□□□ -0.26
PRPF4B-207ENST00000490399 PRKAR2AP13861 404 aaKnown RBP13.33□□□□□ -0.28
PRPF4B-207ENST00000490399 PRR29P0C7W0 189 aa13.32□□□□□ -0.28
PRPF4B-207ENST00000490399 CHADLQ6NUI6 762 aa13.26□□□□□ -0.29
PRPF4B-207ENST00000490399 HAX1O00165 279 aa13.22□□□□□ -0.29
PRPF4B-207ENST00000490399 STAG3Q9UJ98 1225 aa13.17□□□□□ -0.3
PRPF4B-207ENST00000490399 PROM2Q8N271 834 aa13.13□□□□□ -0.31
PRPF4B-207ENST00000490399 SP7Q8TDD2 431 aaPredicted RBP13.12□□□□□ -0.31
PRPF4B-207ENST00000490399 EVX2Q03828 476 aa13.1□□□□□ -0.31
PRPF4B-207ENST00000490399 CREBZFQ9NS37 354 aa13.06□□□□□ -0.32
PRPF4B-207ENST00000490399 FARP1Q9Y4F1 1045 aaPredicted RBP13.05□□□□□ -0.32
PRPF4B-207ENST00000490399 C19orf67A6NJJ6 358 aa13.04□□□□□ -0.32
PRPF4B-207ENST00000490399 CD44P16070 742 aaKnown RBP12.93□□□□□ -0.34
PRPF4B-207ENST00000490399 FBXO3Q9UK99 471 aa12.89□□□□□ -0.35
PRPF4B-207ENST00000490399 MNX1P50219 401 aaPredicted RBP12.87□□□□□ -0.35
PRPF4B-207ENST00000490399 NPM1P06748 294 aaKnown RBP eCLIP12.8□□□□□ -0.36
PRPF4B-207ENST00000490399 MIER1Q8N108 512 aa12.8□□□□□ -0.36
PRPF4B-207ENST00000490399 GABBR2O75899 941 aa12.79□□□□□ -0.36
PRPF4B-207ENST00000490399 ZRANB1Q9UGI0 708 aa12.79□□□□□ -0.36
PRPF4B-207ENST00000490399 VASPP50552 380 aaPredicted RBP12.77□□□□□ -0.37
PRPF4B-207ENST00000490399 PLEKHG5O94827 1062 aa12.74□□□□□ -0.37
PRPF4B-207ENST00000490399 PLCD3Q8N3E9 789 aa12.74□□□□□ -0.37
PRPF4B-207ENST00000490399 PAK3O75914 559 aaPredicted RBP12.72□□□□□ -0.37
PRPF4B-207ENST00000490399 ZNF579Q8NAF0 562 aaKnown RBP12.72□□□□□ -0.37
PRPF4B-207ENST00000490399 PHF12Q96QT6 1004 aa12.66□□□□□ -0.38
PRPF4B-207ENST00000490399 IFNLR1Q8IU57 520 aaPredicted RBP12.65□□□□□ -0.38
PRPF4B-207ENST00000490399 TSPYL2Q9H2G4 693 aaPredicted RBP12.64□□□□□ -0.39
PRPF4B-207ENST00000490399 CLCN6P51797 869 aa12.59□□□□□ -0.39
PRPF4B-207ENST00000490399 RASEFQ8IZ41 740 aa12.59□□□□□ -0.39
PRPF4B-207ENST00000490399 GALR2O43603 387 aaPredicted RBP12.58□□□□□ -0.4
PRPF4B-207ENST00000490399 ZBTB47Q9UFB7 747 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 420.6 ms