RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 AEBP2Q6ZN18 517 aaPredicted RBP20.08■□□□□ 0.81
CD46-216ENST00000490278 CHIC1Q5VXU3 224 aa18.72■□□□□ 0.59
CD46-216ENST00000490278 SENP3Q9H4L4 574 aaPredicted RBP17.16■□□□□ 0.34
CD46-216ENST00000490278 PHF23Q9BUL5 403 aaPredicted RBP16.9■□□□□ 0.3
CD46-216ENST00000490278 FOXD1Q16676 465 aa16.07■□□□□ 0.16
CD46-216ENST00000490278 POTEDQ86YR6 584 aa15.56■□□□□ 0.08
CD46-216ENST00000490278 PLPPR3Q6T4P5 718 aa15.31■□□□□ 0.04
CD46-216ENST00000490278 MSH5O43196 834 aa15.17■□□□□ 0.02
CD46-216ENST00000490278 PIAS4Q8N2W9 510 aaPredicted RBP14.88□□□□□ -0.03
CD46-216ENST00000490278 PPP6R1Q9UPN7 881 aa14.71□□□□□ -0.05
CD46-216ENST00000490278 ADRA2BP18089 450 aa14.63□□□□□ -0.07
CD46-216ENST00000490278 MAPK8IP2Q13387 824 aaPredicted RBP13.58□□□□□ -0.24
CD46-216ENST00000490278 DMRT2Q9Y5R5 561 aa13.56□□□□□ -0.24
CD46-216ENST00000490278 PPP4R3CPQ6ZMV5 832 aa13.51□□□□□ -0.25
CD46-216ENST00000490278 KCNA4P22459 653 aa13.46□□□□□ -0.25
CD46-216ENST00000490278 SCAF1Q9H7N4 1312 aaKnown RBP13.36□□□□□ -0.27
CD46-216ENST00000490278 CACNB1Q02641 598 aaPredicted RBP13.28□□□□□ -0.28
CD46-216ENST00000490278 NCBP3Q53F19 620 aaKnown RBP13.24□□□□□ -0.29
CD46-216ENST00000490278 CNKSR2Q8WXI2 1034 aa13.09□□□□□ -0.31
CD46-216ENST00000490278 NPM3O75607 178 aaKnown RBP13.03□□□□□ -0.32
CD46-216ENST00000490278 DCAF8L1A6NGE4 600 aa12.98□□□□□ -0.33
CD46-216ENST00000490278 RNF39Q9H2S5 420 aa12.93□□□□□ -0.34
CD46-216ENST00000490278 HOXD11P31277 338 aaPredicted RBP12.9□□□□□ -0.34
CD46-216ENST00000490278 SLC4A1APQ9BWU0 796 aaKnown RBP12.87□□□□□ -0.35
CD46-216ENST00000490278 EHMT2Q96KQ7 1210 aa12.77□□□□□ -0.37
CD46-216ENST00000490278 RNF216Q9NWF9 866 aaPredicted RBP12.77□□□□□ -0.37
CD46-216ENST00000490278 C1QBPQ07021 282 aaKnown RBP12.7□□□□□ -0.38
CD46-216ENST00000490278 DNAJC5BQ9UF47 199 aa12.62□□□□□ -0.39
CD46-216ENST00000490278 CSRNP3Q8WYN3 585 aa12.51□□□□□ -0.41
CD46-216ENST00000490278 ZBTB22O15209 634 aa12.38□□□□□ -0.43
CD46-216ENST00000490278 FOXD4L1Q9NU39 408 aa12.33□□□□□ -0.44
CD46-216ENST00000490278 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.26□□□□□ -0.454e-9■■□□□ 11.7
CD46-216ENST00000490278 SLC4A2P04920 1241 aa12.24□□□□□ -0.45
CD46-216ENST00000490278 POTEHQ6S545 545 aa12.09□□□□□ -0.47
CD46-216ENST00000490278 MYCNP04198 464 aaPredicted RBP12.05□□□□□ -0.48
CD46-216ENST00000490278 U3KPZ7 1027 aaPredicted RBP11.98□□□□□ -0.49
CD46-216ENST00000490278 DSG3P32926 999 aa11.97□□□□□ -0.49
CD46-216ENST00000490278 SPINK5Q9NQ38 1064 aaPredicted RBP11.93□□□□□ -0.5
CD46-216ENST00000490278 CAPN15O75808 1086 aa11.9□□□□□ -0.5
CD46-216ENST00000490278 ATXN8OSP0DMR3 200 aa11.89□□□□□ -0.51
CD46-216ENST00000490278 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.84□□□□□ -0.51
CD46-216ENST00000490278 HNRNPUL2Q1KMD3 747 aaKnown RBP11.84□□□□□ -0.51
CD46-216ENST00000490278 SAMD1Q6SPF0 538 aaPredicted RBP11.81□□□□□ -0.52
CD46-216ENST00000490278 ATF5Q9Y2D1 282 aaPredicted RBP11.68□□□□□ -0.54
CD46-216ENST00000490278 APLP2Q06481 763 aa11.67□□□□□ -0.54
CD46-216ENST00000490278 TRHP20396 242 aaPredicted RBP11.61□□□□□ -0.55
CD46-216ENST00000490278 ABCB7O75027 752 aa11.6□□□□□ -0.55
CD46-216ENST00000490278 ZNF219Q9P2Y4 722 aaPredicted RBP11.57□□□□□ -0.56
CD46-216ENST00000490278 RBM42Q9BTD8 480 aaKnown RBP11.4□□□□□ -0.58
CD46-216ENST00000490278 CHRDL2Q6WN34 429 aa11.33□□□□□ -0.6
CD46-216ENST00000490278 POLA2Q14181 598 aa11.31□□□□□ -0.6
CD46-216ENST00000490278 FKBP8Q14318 412 aa11.3□□□□□ -0.6
CD46-216ENST00000490278 FBLN2P98095 1184 aa11.2□□□□□ -0.62
CD46-216ENST00000490278 MKRN4PQ13434 485 aaPredicted RBP11.19□□□□□ -0.62
CD46-216ENST00000490278 ZBTB12Q9Y330 459 aaPredicted RBP11.15□□□□□ -0.62
CD46-216ENST00000490278 SP7Q8TDD2 431 aaPredicted RBP11.14□□□□□ -0.63
CD46-216ENST00000490278 SPDYE4A6NLX3 237 aa11.07□□□□□ -0.64
CD46-216ENST00000490278 AKT1S1Q96B36 256 aa11.07□□□□□ -0.64
CD46-216ENST00000490278 PIP4P2Q8N4L2 257 aa10.99□□□□□ -0.65
CD46-216ENST00000490278 REM2Q8IYK8 340 aaPredicted RBP10.97□□□□□ -0.65
CD46-216ENST00000490278 PROM2Q8N271 834 aa10.91□□□□□ -0.66
CD46-216ENST00000490278 OSCARQ8IYS5 282 aa10.9□□□□□ -0.66
CD46-216ENST00000490278 HAX1O00165 279 aa10.88□□□□□ -0.67
CD46-216ENST00000490278 SPDYE2BA6NHP3 402 aa10.87□□□□□ -0.67
CD46-216ENST00000490278 SPDYE6P0CI01 402 aa10.87□□□□□ -0.67
CD46-216ENST00000490278 SPDYE2Q495Y8 402 aa10.87□□□□□ -0.67
CD46-216ENST00000490278 FXR2P51116 673 aaKnown RBP eCLIP10.86□□□□□ -0.67
CD46-216ENST00000490278 FBXO3Q9UK99 471 aa10.86□□□□□ -0.67
CD46-216ENST00000490278 PITPNM1O00562 1244 aa10.85□□□□□ -0.67
CD46-216ENST00000490278 ZNF692Q9BU19 519 aaPredicted RBP10.85□□□□□ -0.67
CD46-216ENST00000490278 SSUH2Q9Y2M2 353 aa10.79□□□□□ -0.68
CD46-216ENST00000490278 EVX2Q03828 476 aa10.76□□□□□ -0.69
CD46-216ENST00000490278 AMER1Q5JTC6 1135 aaPredicted RBP10.73□□□□□ -0.69
CD46-216ENST00000490278 PABPN1Q86U42 306 aaKnown RBP eCLIP10.71□□□□□ -0.69
CD46-216ENST00000490278 VASPP50552 380 aaPredicted RBP10.69□□□□□ -0.7
CD46-216ENST00000490278 RTN4Q9NQC3 1192 aaKnown RBP10.68□□□□□ -0.7
CD46-216ENST00000490278 STAG3Q9UJ98 1225 aa10.62□□□□□ -0.71
CD46-216ENST00000490278 PRKAR2AP13861 404 aaKnown RBP10.56□□□□□ -0.72
CD46-216ENST00000490278 IFNLR1Q8IU57 520 aaPredicted RBP10.55□□□□□ -0.72
CD46-216ENST00000490278 C19orf67A6NJJ6 358 aa10.53□□□□□ -0.72
CD46-216ENST00000490278 PLCD3Q8N3E9 789 aa10.49□□□□□ -0.73
CD46-216ENST00000490278 SPDYE1Q8NFV5 336 aaPredicted RBP10.49□□□□□ -0.73
CD46-216ENST00000490278 CLEC11AQ9Y240 323 aa10.49□□□□□ -0.73
CD46-216ENST00000490278 GABBR2O75899 941 aa10.48□□□□□ -0.73
CD46-216ENST00000490278 MIER1Q8N108 512 aa10.48□□□□□ -0.73
CD46-216ENST00000490278 KLHL34Q8N239 644 aa10.45□□□□□ -0.74
CD46-216ENST00000490278 LHX8Q68G74 356 aa10.44□□□□□ -0.74
CD46-216ENST00000490278 PLEKHG5O94827 1062 aa10.42□□□□□ -0.74
CD46-216ENST00000490278 SPOCK2Q92563 424 aa10.39□□□□□ -0.75
CD46-216ENST00000490278 PRR29P0C7W0 189 aa10.37□□□□□ -0.75
CD46-216ENST00000490278 ZBTB47Q9UFB7 747 aaPredicted RBP10.37□□□□□ -0.75
CD46-216ENST00000490278 CHADLQ6NUI6 762 aa10.36□□□□□ -0.75
CD46-216ENST00000490278 PKD2Q13563 968 aa10.28□□□□□ -0.76
CD46-216ENST00000490278 POTEIP0CG38 1075 aa10.27□□□□□ -0.77
CD46-216ENST00000490278 CREBZFQ9NS37 354 aa10.27□□□□□ -0.77
CD46-216ENST00000490278 ECM2O94769 699 aaPredicted RBP10.2□□□□□ -0.78
CD46-216ENST00000490278 MNX1P50219 401 aaPredicted RBP10.2□□□□□ -0.78
CD46-216ENST00000490278 CD44P16070 742 aaKnown RBP10.19□□□□□ -0.78
CD46-216ENST00000490278 CIZ1Q9ULV3 898 aaPredicted RBP10.19□□□□□ -0.78
CD46-216ENST00000490278 NUBP1P53384 320 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms