RNA–Protein interactions for RNA: ENST00000490192.1

TM9SF3-206, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 4

Gene TM9SF3, Length 884 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-206ENST00000490192 AEBP2Q6ZN18 517 aaPredicted RBP27.94■■■□□ 2.06
TM9SF3-206ENST00000490192 CHIC1Q5VXU3 224 aa27.01■■□□□ 1.91
TM9SF3-206ENST00000490192 SENP3Q9H4L4 574 aaPredicted RBP23.92■■□□□ 1.42
TM9SF3-206ENST00000490192 PHF23Q9BUL5 403 aaPredicted RBP23.64■■□□□ 1.37
TM9SF3-206ENST00000490192 FOXD1Q16676 465 aa22.16■■□□□ 1.14
TM9SF3-206ENST00000490192 PLPPR3Q6T4P5 718 aa21.84■■□□□ 1.09
TM9SF3-206ENST00000490192 ADRA2BP18089 450 aa21.01■□□□□ 0.95
TM9SF3-206ENST00000490192 PPP6R1Q9UPN7 881 aa21■□□□□ 0.95
TM9SF3-206ENST00000490192 PIAS4Q8N2W9 510 aaPredicted RBP20.88■□□□□ 0.93
TM9SF3-206ENST00000490192 MSH5O43196 834 aa20.69■□□□□ 0.9
TM9SF3-206ENST00000490192 POTEDQ86YR6 584 aa19.41■□□□□ 0.7
TM9SF3-206ENST00000490192 SCAF1Q9H7N4 1312 aaKnown RBP19.38■□□□□ 0.69
TM9SF3-206ENST00000490192 MAPK8IP2Q13387 824 aaPredicted RBP19.16■□□□□ 0.66
TM9SF3-206ENST00000490192 PPP4R3CPQ6ZMV5 832 aa19.16■□□□□ 0.66
TM9SF3-206ENST00000490192 DMRT2Q9Y5R5 561 aa18.97■□□□□ 0.63
TM9SF3-206ENST00000490192 CNKSR2Q8WXI2 1034 aa18.74■□□□□ 0.59
TM9SF3-206ENST00000490192 NCBP3Q53F19 620 aaKnown RBP18.66■□□□□ 0.58
TM9SF3-206ENST00000490192 RNF216Q9NWF9 866 aaPredicted RBP18.44■□□□□ 0.54
TM9SF3-206ENST00000490192 HOXD11P31277 338 aaPredicted RBP18.43■□□□□ 0.54
TM9SF3-206ENST00000490192 DCAF8L1A6NGE4 600 aa18.32■□□□□ 0.52
TM9SF3-206ENST00000490192 KCNA4P22459 653 aa18.25■□□□□ 0.51
TM9SF3-206ENST00000490192 NPM3O75607 178 aaKnown RBP18.24■□□□□ 0.51
TM9SF3-206ENST00000490192 DNAJC5BQ9UF47 199 aa17.74■□□□□ 0.43
TM9SF3-206ENST00000490192 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.68■□□□□ 0.42
TM9SF3-206ENST00000490192 RNF39Q9H2S5 420 aa17.61■□□□□ 0.41
TM9SF3-206ENST00000490192 EHMT2Q96KQ7 1210 aa17.57■□□□□ 0.4
TM9SF3-206ENST00000490192 CACNB1Q02641 598 aaPredicted RBP17.53■□□□□ 0.4
TM9SF3-206ENST00000490192 C1QBPQ07021 282 aaKnown RBP17.45■□□□□ 0.38
TM9SF3-206ENST00000490192 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
TM9SF3-206ENST00000490192 SLC4A2P04920 1241 aa17.28■□□□□ 0.36
TM9SF3-206ENST00000490192 U3KPZ7 1027 aaPredicted RBP17.22■□□□□ 0.35
TM9SF3-206ENST00000490192 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.04■□□□□ 0.32
TM9SF3-206ENST00000490192 HNRNPUL2Q1KMD3 747 aaKnown RBP17.04■□□□□ 0.32
TM9SF3-206ENST00000490192 APLP2Q06481 763 aa16.99■□□□□ 0.31
TM9SF3-206ENST00000490192 FOXD4L1Q9NU39 408 aa16.96■□□□□ 0.31
TM9SF3-206ENST00000490192 CAPN15O75808 1086 aa16.93■□□□□ 0.3
TM9SF3-206ENST00000490192 MYCNP04198 464 aaPredicted RBP16.93■□□□□ 0.3
TM9SF3-206ENST00000490192 SAMD1Q6SPF0 538 aaPredicted RBP16.93■□□□□ 0.3
TM9SF3-206ENST00000490192 CSRNP3Q8WYN3 585 aa16.87■□□□□ 0.29
TM9SF3-206ENST00000490192 SPINK5Q9NQ38 1064 aaPredicted RBP16.87■□□□□ 0.29
TM9SF3-206ENST00000490192 TRHP20396 242 aaPredicted RBP16.75■□□□□ 0.27
TM9SF3-206ENST00000490192 ZNF219Q9P2Y4 722 aaPredicted RBP16.73■□□□□ 0.27
TM9SF3-206ENST00000490192 ZBTB22O15209 634 aa16.71■□□□□ 0.27
TM9SF3-206ENST00000490192 DSG3P32926 999 aa16.63■□□□□ 0.25
TM9SF3-206ENST00000490192 ABCB7O75027 752 aa16.51■□□□□ 0.23
TM9SF3-206ENST00000490192 ATXN8OSP0DMR3 200 aa16.42■□□□□ 0.22
TM9SF3-206ENST00000490192 ATF5Q9Y2D1 282 aaPredicted RBP16.4■□□□□ 0.22
TM9SF3-206ENST00000490192 POLA2Q14181 598 aa16.37■□□□□ 0.21
TM9SF3-206ENST00000490192 ZBTB12Q9Y330 459 aaPredicted RBP16.12■□□□□ 0.17
TM9SF3-206ENST00000490192 RBM42Q9BTD8 480 aaKnown RBP15.97■□□□□ 0.15
TM9SF3-206ENST00000490192 FBLN2P98095 1184 aa15.92■□□□□ 0.14
TM9SF3-206ENST00000490192 OSCARQ8IYS5 282 aa15.78■□□□□ 0.12
TM9SF3-206ENST00000490192 SLC24A1O60721 1099 aa15.72■□□□□ 0.11
TM9SF3-206ENST00000490192 MKRN4PQ13434 485 aaPredicted RBP15.66■□□□□ 0.1
TM9SF3-206ENST00000490192 AKT1S1Q96B36 256 aa15.65■□□□□ 0.1
TM9SF3-206ENST00000490192 RTN4Q9NQC3 1192 aaKnown RBP15.62■□□□□ 0.09
TM9SF3-206ENST00000490192 SPDYE2BA6NHP3 402 aa15.61■□□□□ 0.09
TM9SF3-206ENST00000490192 SPDYE6P0CI01 402 aa15.61■□□□□ 0.09
TM9SF3-206ENST00000490192 SPDYE2Q495Y8 402 aa15.61■□□□□ 0.09
TM9SF3-206ENST00000490192 AMER1Q5JTC6 1135 aaPredicted RBP15.57■□□□□ 0.08
TM9SF3-206ENST00000490192 ZNF692Q9BU19 519 aaPredicted RBP15.53■□□□□ 0.08
TM9SF3-206ENST00000490192 REM2Q8IYK8 340 aaPredicted RBP15.47■□□□□ 0.07
TM9SF3-206ENST00000490192 CHRDL2Q6WN34 429 aa15.4■□□□□ 0.06
TM9SF3-206ENST00000490192 SSUH2Q9Y2M2 353 aa15.37■□□□□ 0.05
TM9SF3-206ENST00000490192 POTEHQ6S545 545 aa15.33■□□□□ 0.04
TM9SF3-206ENST00000490192 PITPNM1O00562 1244 aa15.27■□□□□ 0.04
TM9SF3-206ENST00000490192 PABPN1Q86U42 306 aaKnown RBP eCLIP15.27■□□□□ 0.04
TM9SF3-206ENST00000490192 SPDYE1Q8NFV5 336 aaPredicted RBP15.27■□□□□ 0.04
TM9SF3-206ENST00000490192 SPDYE4A6NLX3 237 aa15.25■□□□□ 0.03
TM9SF3-206ENST00000490192 CLEC11AQ9Y240 323 aa15.24■□□□□ 0.03
TM9SF3-206ENST00000490192 FKBP8Q14318 412 aa15.2■□□□□ 0.02
TM9SF3-206ENST00000490192 PIP4P2Q8N4L2 257 aa15.08■□□□□ 0
TM9SF3-206ENST00000490192 PRR29P0C7W0 189 aa15.05■□□□□ -0
TM9SF3-206ENST00000490192 FXR2P51116 673 aaKnown RBP eCLIP15.05■□□□□ -0
TM9SF3-206ENST00000490192 STAG3Q9UJ98 1225 aa15.02■□□□□ -0
TM9SF3-206ENST00000490192 PRKAR2AP13861 404 aaKnown RBP14.93□□□□□ -0.02
TM9SF3-206ENST00000490192 CHADLQ6NUI6 762 aa14.82□□□□□ -0.04
TM9SF3-206ENST00000490192 PROM2Q8N271 834 aa14.82□□□□□ -0.04
TM9SF3-206ENST00000490192 HAX1O00165 279 aa14.81□□□□□ -0.04
TM9SF3-206ENST00000490192 FARP1Q9Y4F1 1045 aaPredicted RBP14.67□□□□□ -0.06
TM9SF3-206ENST00000490192 CREBZFQ9NS37 354 aa14.65□□□□□ -0.06
TM9SF3-206ENST00000490192 PLEKHG5O94827 1062 aa14.61□□□□□ -0.07
TM9SF3-206ENST00000490192 MIER1Q8N108 512 aa14.57□□□□□ -0.08
TM9SF3-206ENST00000490192 SP7Q8TDD2 431 aaPredicted RBP14.57□□□□□ -0.08
TM9SF3-206ENST00000490192 C19orf67A6NJJ6 358 aa14.56□□□□□ -0.08
TM9SF3-206ENST00000490192 FBXO3Q9UK99 471 aa14.56□□□□□ -0.08
TM9SF3-206ENST00000490192 NPM1P06748 294 aaKnown RBP eCLIP14.55□□□□□ -0.08
TM9SF3-206ENST00000490192 PLCD3Q8N3E9 789 aa14.51□□□□□ -0.09
TM9SF3-206ENST00000490192 CD44P16070 742 aaKnown RBP14.49□□□□□ -0.09
TM9SF3-206ENST00000490192 EVX2Q03828 476 aa14.49□□□□□ -0.09
TM9SF3-206ENST00000490192 PAK3O75914 559 aaPredicted RBP14.43□□□□□ -0.1
TM9SF3-206ENST00000490192 MNX1P50219 401 aaPredicted RBP14.41□□□□□ -0.1
TM9SF3-206ENST00000490192 ZBTB47Q9UFB7 747 aaPredicted RBP14.4□□□□□ -0.1
TM9SF3-206ENST00000490192 ZRANB1Q9UGI0 708 aa14.37□□□□□ -0.11
TM9SF3-206ENST00000490192 PLCB2Q00722 1185 aa14.34□□□□□ -0.11
TM9SF3-206ENST00000490192 CLCN6P51797 869 aa14.29□□□□□ -0.12
TM9SF3-206ENST00000490192 GABBR2O75899 941 aa14.27□□□□□ -0.13
TM9SF3-206ENST00000490192 VASPP50552 380 aaPredicted RBP14.27□□□□□ -0.13
TM9SF3-206ENST00000490192 KLHL34Q8N239 644 aa14.24□□□□□ -0.13
TM9SF3-206ENST00000490192 ZNF579Q8NAF0 562 aaKnown RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 785.6 ms