RNA–Protein interactions for RNA: ENST00000489712.6

NF1-213, Transcript of neurofibromin 1, humanhuman

TSL 4

Gene NF1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-213ENST00000489712 AEBP2Q6ZN18 517 aaPredicted RBP21.16■□□□□ 0.98
NF1-213ENST00000489712 CHIC1Q5VXU3 224 aa20.47■□□□□ 0.87
NF1-213ENST00000489712 SENP3Q9H4L4 574 aaPredicted RBP18.08■□□□□ 0.48
NF1-213ENST00000489712 PHF23Q9BUL5 403 aaPredicted RBP17.93■□□□□ 0.46
NF1-213ENST00000489712 FOXD1Q16676 465 aa16.74■□□□□ 0.27
NF1-213ENST00000489712 PLPPR3Q6T4P5 718 aa16.55■□□□□ 0.24
NF1-213ENST00000489712 PPP6R1Q9UPN7 881 aa15.89■□□□□ 0.13
NF1-213ENST00000489712 ADRA2BP18089 450 aa15.87■□□□□ 0.13
NF1-213ENST00000489712 PIAS4Q8N2W9 510 aaPredicted RBP15.78■□□□□ 0.12
NF1-213ENST00000489712 MSH5O43196 834 aa15.61■□□□□ 0.09
NF1-213ENST00000489712 SCAF1Q9H7N4 1312 aaKnown RBP14.6□□□□□ -0.07
NF1-213ENST00000489712 POTEDQ86YR6 584 aa14.58□□□□□ -0.08
NF1-213ENST00000489712 PPP4R3CPQ6ZMV5 832 aa14.52□□□□□ -0.09
NF1-213ENST00000489712 MAPK8IP2Q13387 824 aaPredicted RBP14.45□□□□□ -0.1
NF1-213ENST00000489712 DMRT2Q9Y5R5 561 aa14.37□□□□□ -0.11
NF1-213ENST00000489712 CNKSR2Q8WXI2 1034 aa14.18□□□□□ -0.14
NF1-213ENST00000489712 NCBP3Q53F19 620 aaKnown RBP14.11□□□□□ -0.15
NF1-213ENST00000489712 RNF216Q9NWF9 866 aaPredicted RBP13.97□□□□□ -0.17
NF1-213ENST00000489712 HOXD11P31277 338 aaPredicted RBP13.96□□□□□ -0.17
NF1-213ENST00000489712 KCNA4P22459 653 aa13.89□□□□□ -0.19
NF1-213ENST00000489712 NPM3O75607 178 aaKnown RBP13.86□□□□□ -0.19
NF1-213ENST00000489712 DCAF8L1A6NGE4 600 aa13.78□□□□□ -0.2
NF1-213ENST00000489712 DNAJC5BQ9UF47 199 aa13.51□□□□□ -0.25
NF1-213ENST00000489712 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.34□□□□□ -0.27
NF1-213ENST00000489712 RNF39Q9H2S5 420 aa13.31□□□□□ -0.28
NF1-213ENST00000489712 SLC4A1APQ9BWU0 796 aaKnown RBP13.22□□□□□ -0.29
NF1-213ENST00000489712 C1QBPQ07021 282 aaKnown RBP13.16□□□□□ -0.3
NF1-213ENST00000489712 CACNB1Q02641 598 aaPredicted RBP13.15□□□□□ -0.3
NF1-213ENST00000489712 SLC4A2P04920 1241 aa13.12□□□□□ -0.31
NF1-213ENST00000489712 U3KPZ7 1027 aaPredicted RBP13.06□□□□□ -0.32
NF1-213ENST00000489712 FOXD4L1Q9NU39 408 aa12.91□□□□□ -0.34
NF1-213ENST00000489712 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.88□□□□□ -0.35
NF1-213ENST00000489712 HNRNPUL2Q1KMD3 747 aaKnown RBP12.88□□□□□ -0.35
NF1-213ENST00000489712 MYCNP04198 464 aaPredicted RBP12.85□□□□□ -0.35
NF1-213ENST00000489712 APLP2Q06481 763 aa12.83□□□□□ -0.36
NF1-213ENST00000489712 SAMD1Q6SPF0 538 aaPredicted RBP12.82□□□□□ -0.36
NF1-213ENST00000489712 ZBTB22O15209 634 aa12.77□□□□□ -0.37
NF1-213ENST00000489712 CAPN15O75808 1086 aa12.76□□□□□ -0.37
NF1-213ENST00000489712 SPINK5Q9NQ38 1064 aaPredicted RBP12.76□□□□□ -0.37
NF1-213ENST00000489712 ZNF219Q9P2Y4 722 aaPredicted RBP12.66□□□□□ -0.38
NF1-213ENST00000489712 TRHP20396 242 aaPredicted RBP12.62□□□□□ -0.39
NF1-213ENST00000489712 DSG3P32926 999 aa12.58□□□□□ -0.4
NF1-213ENST00000489712 EHMT2Q96KQ7 1210 aa12.56□□□□□ -0.4
NF1-213ENST00000489712 CSRNP3Q8WYN3 585 aa12.49□□□□□ -0.41
NF1-213ENST00000489712 ABCB7O75027 752 aa12.47□□□□□ -0.41
NF1-213ENST00000489712 ATXN8OSP0DMR3 200 aa12.47□□□□□ -0.41
NF1-213ENST00000489712 ATF5Q9Y2D1 282 aaPredicted RBP12.45□□□□□ -0.42
NF1-213ENST00000489712 POLA2Q14181 598 aa12.34□□□□□ -0.43
NF1-213ENST00000489712 ZBTB12Q9Y330 459 aaPredicted RBP12.21□□□□□ -0.45
NF1-213ENST00000489712 RBM42Q9BTD8 480 aaKnown RBP12.06□□□□□ -0.48
NF1-213ENST00000489712 FBLN2P98095 1184 aa12.03□□□□□ -0.48
NF1-213ENST00000489712 OSCARQ8IYS5 282 aa11.98□□□□□ -0.49
NF1-213ENST00000489712 MKRN4PQ13434 485 aaPredicted RBP11.91□□□□□ -0.5
NF1-213ENST00000489712 SPDYE2BA6NHP3 402 aa11.83□□□□□ -0.52
NF1-213ENST00000489712 SPDYE6P0CI01 402 aa11.83□□□□□ -0.52
NF1-213ENST00000489712 SPDYE2Q495Y8 402 aa11.83□□□□□ -0.52
NF1-213ENST00000489712 AKT1S1Q96B36 256 aa11.82□□□□□ -0.52
NF1-213ENST00000489712 ZNF692Q9BU19 519 aaPredicted RBP11.71□□□□□ -0.53
NF1-213ENST00000489712 SSUH2Q9Y2M2 353 aa11.69□□□□□ -0.54
NF1-213ENST00000489712 REM2Q8IYK8 340 aaPredicted RBP11.68□□□□□ -0.54
NF1-213ENST00000489712 CHRDL2Q6WN34 429 aa11.61□□□□□ -0.55
NF1-213ENST00000489712 SPDYE4A6NLX3 237 aa11.57□□□□□ -0.56
NF1-213ENST00000489712 PITPNM1O00562 1244 aa11.56□□□□□ -0.56
NF1-213ENST00000489712 PABPN1Q86U42 306 aaKnown RBP eCLIP11.55□□□□□ -0.56
NF1-213ENST00000489712 SPDYE1Q8NFV5 336 aaPredicted RBP11.54□□□□□ -0.56
NF1-213ENST00000489712 POTEHQ6S545 545 aa11.52□□□□□ -0.57
NF1-213ENST00000489712 CLEC11AQ9Y240 323 aa11.47□□□□□ -0.57
NF1-213ENST00000489712 PIP4P2Q8N4L2 257 aa11.39□□□□□ -0.59
NF1-213ENST00000489712 FXR2P51116 673 aaKnown RBP eCLIP11.38□□□□□ -0.59
NF1-213ENST00000489712 FKBP8Q14318 412 aa11.35□□□□□ -0.59
NF1-213ENST00000489712 PRR29P0C7W0 189 aa11.34□□□□□ -0.59
NF1-213ENST00000489712 STAG3Q9UJ98 1225 aa11.34□□□□□ -0.59
NF1-213ENST00000489712 PROM2Q8N271 834 aa11.33□□□□□ -0.6
NF1-213ENST00000489712 PRKAR2AP13861 404 aaKnown RBP11.27□□□□□ -0.61
NF1-213ENST00000489712 CHADLQ6NUI6 762 aa11.2□□□□□ -0.62
NF1-213ENST00000489712 CREBZFQ9NS37 354 aa11.11□□□□□ -0.63
NF1-213ENST00000489712 HAX1O00165 279 aa11.09□□□□□ -0.63
NF1-213ENST00000489712 FARP1Q9Y4F1 1045 aaPredicted RBP11.08□□□□□ -0.64
NF1-213ENST00000489712 FBXO3Q9UK99 471 aa11.04□□□□□ -0.64
NF1-213ENST00000489712 PLEKHG5O94827 1062 aa11.03□□□□□ -0.64
NF1-213ENST00000489712 C19orf67A6NJJ6 358 aa11□□□□□ -0.65
NF1-213ENST00000489712 MIER1Q8N108 512 aa10.98□□□□□ -0.65
NF1-213ENST00000489712 PLCD3Q8N3E9 789 aa10.98□□□□□ -0.65
NF1-213ENST00000489712 NPM1P06748 294 aaKnown RBP eCLIP10.97□□□□□ -0.65
NF1-213ENST00000489712 SP7Q8TDD2 431 aaPredicted RBP10.97□□□□□ -0.65
NF1-213ENST00000489712 CD44P16070 742 aaKnown RBP10.95□□□□□ -0.66
NF1-213ENST00000489712 MNX1P50219 401 aaPredicted RBP10.95□□□□□ -0.66
NF1-213ENST00000489712 EVX2Q03828 476 aa10.92□□□□□ -0.66
NF1-213ENST00000489712 ZBTB47Q9UFB7 747 aaPredicted RBP10.9□□□□□ -0.66
NF1-213ENST00000489712 VASPP50552 380 aaPredicted RBP10.89□□□□□ -0.67
NF1-213ENST00000489712 PAK3O75914 559 aaPredicted RBP10.88□□□□□ -0.67
NF1-213ENST00000489712 ZRANB1Q9UGI0 708 aa10.84□□□□□ -0.67
NF1-213ENST00000489712 ZNF579Q8NAF0 562 aaKnown RBP10.8□□□□□ -0.68
NF1-213ENST00000489712 TSPYL2Q9H2G4 693 aaPredicted RBP10.76□□□□□ -0.69
NF1-213ENST00000489712 CLCN6P51797 869 aa10.75□□□□□ -0.69
NF1-213ENST00000489712 KLHL34Q8N239 644 aa10.75□□□□□ -0.69
NF1-213ENST00000489712 GABBR2O75899 941 aa10.74□□□□□ -0.69
NF1-213ENST00000489712 RASEFQ8IZ41 740 aa10.74□□□□□ -0.69
NF1-213ENST00000489712 NUBP1P53384 320 aa10.72□□□□□ -0.69
NF1-213ENST00000489712 PHF12Q96QT6 1004 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms