RNA–Protein interactions for RNA: ENST00000488908.1

CCDC93-209, Transcript of coiled-coil domain containing 93, humanhuman

TSL 5

Gene CCDC93, Length 268 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-209ENST00000488908 AEBP2Q6ZN18 517 aaPredicted RBP23.39■■□□□ 1.33
CCDC93-209ENST00000488908 CHIC1Q5VXU3 224 aa22.16■■□□□ 1.14
CCDC93-209ENST00000488908 SENP3Q9H4L4 574 aaPredicted RBP20.04■□□□□ 0.8
CCDC93-209ENST00000488908 PHF23Q9BUL5 403 aaPredicted RBP19.73■□□□□ 0.75
CCDC93-209ENST00000488908 FOXD1Q16676 465 aa18.64■□□□□ 0.57
CCDC93-209ENST00000488908 PLPPR3Q6T4P5 718 aa17.7■□□□□ 0.42
CCDC93-209ENST00000488908 MSH5O43196 834 aa17.54■□□□□ 0.4
CCDC93-209ENST00000488908 PIAS4Q8N2W9 510 aaPredicted RBP17.43■□□□□ 0.38
CCDC93-209ENST00000488908 PPP6R1Q9UPN7 881 aa17.33■□□□□ 0.36
CCDC93-209ENST00000488908 ADRA2BP18089 450 aa17.29■□□□□ 0.36
CCDC93-209ENST00000488908 POTEDQ86YR6 584 aa17.22■□□□□ 0.35
CCDC93-209ENST00000488908 SCAF1Q9H7N4 1312 aaKnown RBP15.91■□□□□ 0.14
CCDC93-209ENST00000488908 MAPK8IP2Q13387 824 aaPredicted RBP15.89■□□□□ 0.13
CCDC93-209ENST00000488908 DMRT2Q9Y5R5 561 aa15.85■□□□□ 0.13
CCDC93-209ENST00000488908 PPP4R3CPQ6ZMV5 832 aa15.47■□□□□ 0.07
CCDC93-209ENST00000488908 DCAF8L1A6NGE4 600 aa15.23■□□□□ 0.03
CCDC93-209ENST00000488908 HOXD11P31277 338 aaPredicted RBP15.23■□□□□ 0.03
CCDC93-209ENST00000488908 CNKSR2Q8WXI2 1034 aa15.23■□□□□ 0.03
CCDC93-209ENST00000488908 RNF216Q9NWF9 866 aaPredicted RBP15.11■□□□□ 0.01
CCDC93-209ENST00000488908 CACNB1Q02641 598 aaPredicted RBP15.09■□□□□ 0.01
CCDC93-209ENST00000488908 RNF39Q9H2S5 420 aa14.93□□□□□ -0.02
CCDC93-209ENST00000488908 NCBP3Q53F19 620 aaKnown RBP14.9□□□□□ -0.02
CCDC93-209ENST00000488908 DNAJC5BQ9UF47 199 aa14.75□□□□□ -0.05
CCDC93-209ENST00000488908 C1QBPQ07021 282 aaKnown RBP14.73□□□□□ -0.05
CCDC93-209ENST00000488908 NPM3O75607 178 aaKnown RBP14.63□□□□□ -0.07
CCDC93-209ENST00000488908 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.54□□□□□ -0.08
CCDC93-209ENST00000488908 KCNA4P22459 653 aa14.26□□□□□ -0.13
CCDC93-209ENST00000488908 U3KPZ7 1027 aaPredicted RBP14.18□□□□□ -0.14
CCDC93-209ENST00000488908 CAPN15O75808 1086 aa14.02□□□□□ -0.17
CCDC93-209ENST00000488908 SPINK5Q9NQ38 1064 aaPredicted RBP14□□□□□ -0.17
CCDC93-209ENST00000488908 SLC4A2P04920 1241 aa13.97□□□□□ -0.17
CCDC93-209ENST00000488908 DSG3P32926 999 aa13.94□□□□□ -0.18
CCDC93-209ENST00000488908 APLP2Q06481 763 aa13.87□□□□□ -0.19
CCDC93-209ENST00000488908 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.83□□□□□ -0.2
CCDC93-209ENST00000488908 HNRNPUL2Q1KMD3 747 aaKnown RBP13.83□□□□□ -0.2
CCDC93-209ENST00000488908 TRHP20396 242 aaPredicted RBP13.77□□□□□ -0.21
CCDC93-209ENST00000488908 ZNF219Q9P2Y4 722 aaPredicted RBP13.77□□□□□ -0.21
CCDC93-209ENST00000488908 SAMD1Q6SPF0 538 aaPredicted RBP13.73□□□□□ -0.21
CCDC93-209ENST00000488908 ABCB7O75027 752 aa13.67□□□□□ -0.22
CCDC93-209ENST00000488908 MYCNP04198 464 aaPredicted RBP13.57□□□□□ -0.24
CCDC93-209ENST00000488908 POTEHQ6S545 545 aa13.5□□□□□ -0.25
CCDC93-209ENST00000488908 SLC4A1APQ9BWU0 796 aaKnown RBP13.47□□□□□ -0.25
CCDC93-209ENST00000488908 POLA2Q14181 598 aa13.37□□□□□ -0.27
CCDC93-209ENST00000488908 RBM42Q9BTD8 480 aaKnown RBP13.36□□□□□ -0.27
CCDC93-209ENST00000488908 FOXD4L1Q9NU39 408 aa13.36□□□□□ -0.27
CCDC93-209ENST00000488908 ATF5Q9Y2D1 282 aaPredicted RBP13.2□□□□□ -0.3
CCDC93-209ENST00000488908 ZBTB12Q9Y330 459 aaPredicted RBP13.15□□□□□ -0.3
CCDC93-209ENST00000488908 ZBTB22O15209 634 aa13.08□□□□□ -0.32
CCDC93-209ENST00000488908 CHRDL2Q6WN34 429 aa13.07□□□□□ -0.32
CCDC93-209ENST00000488908 AKT1S1Q96B36 256 aa13.01□□□□□ -0.33
CCDC93-209ENST00000488908 ATXN8OSP0DMR3 200 aa12.99□□□□□ -0.33
CCDC93-209ENST00000488908 OSCARQ8IYS5 282 aa12.95□□□□□ -0.34
CCDC93-209ENST00000488908 REM2Q8IYK8 340 aaPredicted RBP12.86□□□□□ -0.35
CCDC93-209ENST00000488908 FBLN2P98095 1184 aa12.77□□□□□ -0.37
CCDC93-209ENST00000488908 PITPNM1O00562 1244 aa12.72□□□□□ -0.37
CCDC93-209ENST00000488908 PIP4P2Q8N4L2 257 aa12.72□□□□□ -0.37
CCDC93-209ENST00000488908 SPDYE2BA6NHP3 402 aa12.71□□□□□ -0.37
CCDC93-209ENST00000488908 SPDYE6P0CI01 402 aa12.71□□□□□ -0.37
CCDC93-209ENST00000488908 SPDYE2Q495Y8 402 aa12.71□□□□□ -0.37
CCDC93-209ENST00000488908 FXR2P51116 673 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCDC93-209ENST00000488908 SP7Q8TDD2 431 aaPredicted RBP12.62□□□□□ -0.39
CCDC93-209ENST00000488908 MKRN4PQ13434 485 aaPredicted RBP12.59□□□□□ -0.39
CCDC93-209ENST00000488908 HAX1O00165 279 aa12.54□□□□□ -0.4
CCDC93-209ENST00000488908 ZNF692Q9BU19 519 aaPredicted RBP12.54□□□□□ -0.4
CCDC93-209ENST00000488908 SPDYE1Q8NFV5 336 aaPredicted RBP12.51□□□□□ -0.41
CCDC93-209ENST00000488908 SSUH2Q9Y2M2 353 aa12.5□□□□□ -0.41
CCDC93-209ENST00000488908 CLEC11AQ9Y240 323 aa12.49□□□□□ -0.41
CCDC93-209ENST00000488908 PRKAR2AP13861 404 aaKnown RBP12.41□□□□□ -0.42
CCDC93-209ENST00000488908 CSRNP3Q8WYN3 585 aa12.41□□□□□ -0.42
CCDC93-209ENST00000488908 PABPN1Q86U42 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
CCDC93-209ENST00000488908 EVX2Q03828 476 aa12.31□□□□□ -0.44
CCDC93-209ENST00000488908 PRR29P0C7W0 189 aa12.27□□□□□ -0.45
CCDC93-209ENST00000488908 C19orf67A6NJJ6 358 aa12.23□□□□□ -0.45
CCDC93-209ENST00000488908 CHADLQ6NUI6 762 aa12.23□□□□□ -0.45
CCDC93-209ENST00000488908 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
CCDC93-209ENST00000488908 GABBR2O75899 941 aa12.07□□□□□ -0.48
CCDC93-209ENST00000488908 FARP1Q9Y4F1 1045 aaPredicted RBP12.05□□□□□ -0.48
CCDC93-209ENST00000488908 CD44P16070 742 aaKnown RBP12.02□□□□□ -0.49
CCDC93-209ENST00000488908 STAG3Q9UJ98 1225 aa12.02□□□□□ -0.49
CCDC93-209ENST00000488908 SPDYE4A6NLX3 237 aa11.99□□□□□ -0.49
CCDC93-209ENST00000488908 CLCN6P51797 869 aa11.92□□□□□ -0.5
CCDC93-209ENST00000488908 CREBZFQ9NS37 354 aa11.91□□□□□ -0.5
CCDC93-209ENST00000488908 LHX8Q68G74 356 aa11.83□□□□□ -0.52
CCDC93-209ENST00000488908 ZRANB1Q9UGI0 708 aa11.83□□□□□ -0.52
CCDC93-209ENST00000488908 ZNF579Q8NAF0 562 aaKnown RBP11.82□□□□□ -0.52
CCDC93-209ENST00000488908 POTEIP0CG38 1075 aa11.78□□□□□ -0.52
CCDC93-209ENST00000488908 DCBLD2Q96PD2 775 aa11.77□□□□□ -0.53
CCDC93-209ENST00000488908 PAK3O75914 559 aaPredicted RBP11.76□□□□□ -0.53
CCDC93-209ENST00000488908 NPM1P06748 294 aaKnown RBP eCLIP11.75□□□□□ -0.53
CCDC93-209ENST00000488908 MNX1P50219 401 aaPredicted RBP11.68□□□□□ -0.54
CCDC93-209ENST00000488908 PROM2Q8N271 834 aa11.67□□□□□ -0.54
CCDC93-209ENST00000488908 GALR2O43603 387 aaPredicted RBP11.66□□□□□ -0.54
CCDC93-209ENST00000488908 PHF12Q96QT6 1004 aa11.63□□□□□ -0.55
CCDC93-209ENST00000488908 PLEKHG5O94827 1062 aa11.52□□□□□ -0.57
CCDC93-209ENST00000488908 TSPYL2Q9H2G4 693 aaPredicted RBP11.49□□□□□ -0.57
CCDC93-209ENST00000488908 MS4A3Q96HJ5 214 aa11.48□□□□□ -0.57
CCDC93-209ENST00000488908 MIER1Q8N108 512 aa11.47□□□□□ -0.57
CCDC93-209ENST00000488908 CCDC61Q9Y6R9 512 aa11.44□□□□□ -0.58
CCDC93-209ENST00000488908 ASTLQ6HA08 431 aaPredicted RBP11.43□□□□□ -0.58
CCDC93-209ENST00000488908 PELP1Q8IZL8 1130 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms