RNA–Protein interactions for RNA: ENST00000487739.1

CCDC66-221, Transcript of coiled-coil domain containing 66, humanhuman

TSL 3

Gene CCDC66, Length 443 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66-221ENST00000487739 AEBP2Q6ZN18 517 aaPredicted RBP27.12■■□□□ 1.93
CCDC66-221ENST00000487739 CHIC1Q5VXU3 224 aa26.1■■□□□ 1.77
CCDC66-221ENST00000487739 SENP3Q9H4L4 574 aaPredicted RBP23.16■■□□□ 1.3
CCDC66-221ENST00000487739 PHF23Q9BUL5 403 aaPredicted RBP22.86■■□□□ 1.25
CCDC66-221ENST00000487739 FOXD1Q16676 465 aa21.49■■□□□ 1.03
CCDC66-221ENST00000487739 PLPPR3Q6T4P5 718 aa21.02■□□□□ 0.96
CCDC66-221ENST00000487739 PPP6R1Q9UPN7 881 aa20.31■□□□□ 0.84
CCDC66-221ENST00000487739 ADRA2BP18089 450 aa20.28■□□□□ 0.84
CCDC66-221ENST00000487739 PIAS4Q8N2W9 510 aaPredicted RBP20.21■□□□□ 0.83
CCDC66-221ENST00000487739 MSH5O43196 834 aa20.06■□□□□ 0.8
CCDC66-221ENST00000487739 POTEDQ86YR6 584 aa19.56■□□□□ 0.72
CCDC66-221ENST00000487739 SCAF1Q9H7N4 1312 aaKnown RBP18.63■□□□□ 0.57
CCDC66-221ENST00000487739 MAPK8IP2Q13387 824 aaPredicted RBP18.51■□□□□ 0.55
CCDC66-221ENST00000487739 PPP4R3CPQ6ZMV5 832 aa18.44■□□□□ 0.54
CCDC66-221ENST00000487739 DMRT2Q9Y5R5 561 aa18.4■□□□□ 0.54
CCDC66-221ENST00000487739 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
CCDC66-221ENST00000487739 NCBP3Q53F19 620 aaKnown RBP17.88■□□□□ 0.45
CCDC66-221ENST00000487739 HOXD11P31277 338 aaPredicted RBP17.84■□□□□ 0.45
CCDC66-221ENST00000487739 RNF216Q9NWF9 866 aaPredicted RBP17.8■□□□□ 0.44
CCDC66-221ENST00000487739 DCAF8L1A6NGE4 600 aa17.64■□□□□ 0.41
CCDC66-221ENST00000487739 NPM3O75607 178 aaKnown RBP17.56■□□□□ 0.4
CCDC66-221ENST00000487739 KCNA4P22459 653 aa17.49■□□□□ 0.39
CCDC66-221ENST00000487739 DNAJC5BQ9UF47 199 aa17.19■□□□□ 0.34
CCDC66-221ENST00000487739 RNF39Q9H2S5 420 aa17.11■□□□□ 0.33
CCDC66-221ENST00000487739 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.02■□□□□ 0.32
CCDC66-221ENST00000487739 CACNB1Q02641 598 aaPredicted RBP17■□□□□ 0.31
CCDC66-221ENST00000487739 C1QBPQ07021 282 aaKnown RBP16.9■□□□□ 0.3
CCDC66-221ENST00000487739 SLC4A2P04920 1241 aa16.67■□□□□ 0.26
CCDC66-221ENST00000487739 U3KPZ7 1027 aaPredicted RBP16.67■□□□□ 0.26
CCDC66-221ENST00000487739 SLC4A1APQ9BWU0 796 aaKnown RBP16.61■□□□□ 0.25
CCDC66-221ENST00000487739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.37■□□□□ 0.21
CCDC66-221ENST00000487739 HNRNPUL2Q1KMD3 747 aaKnown RBP16.37■□□□□ 0.21
CCDC66-221ENST00000487739 APLP2Q06481 763 aa16.32■□□□□ 0.2
CCDC66-221ENST00000487739 SPINK5Q9NQ38 1064 aaPredicted RBP16.32■□□□□ 0.2
CCDC66-221ENST00000487739 CAPN15O75808 1086 aa16.31■□□□□ 0.2
CCDC66-221ENST00000487739 MYCNP04198 464 aaPredicted RBP16.28■□□□□ 0.2
CCDC66-221ENST00000487739 SAMD1Q6SPF0 538 aaPredicted RBP16.27■□□□□ 0.2
CCDC66-221ENST00000487739 FOXD4L1Q9NU39 408 aa16.26■□□□□ 0.19
CCDC66-221ENST00000487739 ZNF219Q9P2Y4 722 aaPredicted RBP16.13■□□□□ 0.17
CCDC66-221ENST00000487739 TRHP20396 242 aaPredicted RBP16.12■□□□□ 0.17
CCDC66-221ENST00000487739 DSG3P32926 999 aa16.12■□□□□ 0.17
CCDC66-221ENST00000487739 ZBTB22O15209 634 aa16.07■□□□□ 0.16
CCDC66-221ENST00000487739 ABCB7O75027 752 aa15.95■□□□□ 0.14
CCDC66-221ENST00000487739 ATF5Q9Y2D1 282 aaPredicted RBP15.8■□□□□ 0.12
CCDC66-221ENST00000487739 ATXN8OSP0DMR3 200 aa15.75■□□□□ 0.11
CCDC66-221ENST00000487739 POLA2Q14181 598 aa15.75■□□□□ 0.11
CCDC66-221ENST00000487739 CSRNP3Q8WYN3 585 aa15.61■□□□□ 0.09
CCDC66-221ENST00000487739 EHMT2Q96KQ7 1210 aa15.61■□□□□ 0.09
CCDC66-221ENST00000487739 ZBTB12Q9Y330 459 aaPredicted RBP15.52■□□□□ 0.08
CCDC66-221ENST00000487739 RBM42Q9BTD8 480 aaKnown RBP15.44■□□□□ 0.06
CCDC66-221ENST00000487739 FBLN2P98095 1184 aa15.26■□□□□ 0.03
CCDC66-221ENST00000487739 OSCARQ8IYS5 282 aa15.24■□□□□ 0.03
CCDC66-221ENST00000487739 AKT1S1Q96B36 256 aa15.12■□□□□ 0.01
CCDC66-221ENST00000487739 MKRN4PQ13434 485 aaPredicted RBP15.11■□□□□ 0.01
CCDC66-221ENST00000487739 SPDYE2BA6NHP3 402 aa15.04■□□□□ -0
CCDC66-221ENST00000487739 SPDYE6P0CI01 402 aa15.04■□□□□ -0
CCDC66-221ENST00000487739 SPDYE2Q495Y8 402 aa15.04■□□□□ -0
CCDC66-221ENST00000487739 POTEHQ6S545 545 aa14.98□□□□□ -0.01
CCDC66-221ENST00000487739 REM2Q8IYK8 340 aaPredicted RBP14.95□□□□□ -0.02
CCDC66-221ENST00000487739 CHRDL2Q6WN34 429 aa14.93□□□□□ -0.02
CCDC66-221ENST00000487739 ZNF692Q9BU19 519 aaPredicted RBP14.89□□□□□ -0.03
CCDC66-221ENST00000487739 SSUH2Q9Y2M2 353 aa14.85□□□□□ -0.03
CCDC66-221ENST00000487739 PITPNM1O00562 1244 aa14.8□□□□□ -0.04
CCDC66-221ENST00000487739 SPDYE1Q8NFV5 336 aaPredicted RBP14.7□□□□□ -0.06
CCDC66-221ENST00000487739 PABPN1Q86U42 306 aaKnown RBP eCLIP14.67□□□□□ -0.06
CCDC66-221ENST00000487739 CLEC11AQ9Y240 323 aa14.64□□□□□ -0.07
CCDC66-221ENST00000487739 PIP4P2Q8N4L2 257 aa14.63□□□□□ -0.07
CCDC66-221ENST00000487739 FXR2P51116 673 aaKnown RBP eCLIP14.6□□□□□ -0.07
CCDC66-221ENST00000487739 SPDYE4A6NLX3 237 aa14.59□□□□□ -0.07
CCDC66-221ENST00000487739 PRR29P0C7W0 189 aa14.45□□□□□ -0.1
CCDC66-221ENST00000487739 PRKAR2AP13861 404 aaKnown RBP14.42□□□□□ -0.1
CCDC66-221ENST00000487739 STAG3Q9UJ98 1225 aa14.38□□□□□ -0.11
CCDC66-221ENST00000487739 CHADLQ6NUI6 762 aa14.3□□□□□ -0.12
CCDC66-221ENST00000487739 HAX1O00165 279 aa14.29□□□□□ -0.12
CCDC66-221ENST00000487739 PROM2Q8N271 834 aa14.27□□□□□ -0.13
CCDC66-221ENST00000487739 SP7Q8TDD2 431 aaPredicted RBP14.18□□□□□ -0.14
CCDC66-221ENST00000487739 FKBP8Q14318 412 aa14.17□□□□□ -0.14
CCDC66-221ENST00000487739 CREBZFQ9NS37 354 aa14.14□□□□□ -0.15
CCDC66-221ENST00000487739 FARP1Q9Y4F1 1045 aaPredicted RBP14.14□□□□□ -0.15
CCDC66-221ENST00000487739 C19orf67A6NJJ6 358 aa14.12□□□□□ -0.15
CCDC66-221ENST00000487739 EVX2Q03828 476 aa14.08□□□□□ -0.16
CCDC66-221ENST00000487739 CD44P16070 742 aaKnown RBP13.99□□□□□ -0.17
CCDC66-221ENST00000487739 NPM1P06748 294 aaKnown RBP eCLIP13.94□□□□□ -0.18
CCDC66-221ENST00000487739 MNX1P50219 401 aaPredicted RBP13.92□□□□□ -0.18
CCDC66-221ENST00000487739 PLEKHG5O94827 1062 aa13.91□□□□□ -0.18
CCDC66-221ENST00000487739 MIER1Q8N108 512 aa13.89□□□□□ -0.19
CCDC66-221ENST00000487739 PAK3O75914 559 aaPredicted RBP13.84□□□□□ -0.19
CCDC66-221ENST00000487739 PLCD3Q8N3E9 789 aa13.84□□□□□ -0.19
CCDC66-221ENST00000487739 ZRANB1Q9UGI0 708 aa13.84□□□□□ -0.19
CCDC66-221ENST00000487739 FBXO3Q9UK99 471 aa13.84□□□□□ -0.19
CCDC66-221ENST00000487739 GABBR2O75899 941 aa13.82□□□□□ -0.2
CCDC66-221ENST00000487739 ZNF579Q8NAF0 562 aaKnown RBP13.79□□□□□ -0.2
CCDC66-221ENST00000487739 CLCN6P51797 869 aa13.78□□□□□ -0.2
CCDC66-221ENST00000487739 ZBTB47Q9UFB7 747 aaPredicted RBP13.75□□□□□ -0.21
CCDC66-221ENST00000487739 PHF12Q96QT6 1004 aa13.66□□□□□ -0.22
CCDC66-221ENST00000487739 TSPYL2Q9H2G4 693 aaPredicted RBP13.66□□□□□ -0.22
CCDC66-221ENST00000487739 VASPP50552 380 aaPredicted RBP13.64□□□□□ -0.23
CCDC66-221ENST00000487739 RASEFQ8IZ41 740 aa13.61□□□□□ -0.23
CCDC66-221ENST00000487739 CCDC61Q9Y6R9 512 aa13.58□□□□□ -0.24
CCDC66-221ENST00000487739 GALR2O43603 387 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms