RNA–Protein interactions for RNA: ENST00000487689.1

UBR3-211, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 3

Gene UBR3, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-211ENST00000487689 AEBP2Q6ZN18 517 aaPredicted RBP29.53■■■□□ 2.32
UBR3-211ENST00000487689 CHIC1Q5VXU3 224 aa27.65■■■□□ 2.02
UBR3-211ENST00000487689 SENP3Q9H4L4 574 aaPredicted RBP25.22■■□□□ 1.63
UBR3-211ENST00000487689 PHF23Q9BUL5 403 aaPredicted RBP24.86■■□□□ 1.57
UBR3-211ENST00000487689 FOXD1Q16676 465 aa23.58■■□□□ 1.37
UBR3-211ENST00000487689 POTEDQ86YR6 584 aa22.35■■□□□ 1.17
UBR3-211ENST00000487689 MSH5O43196 834 aa22.2■■□□□ 1.14
UBR3-211ENST00000487689 PIAS4Q8N2W9 510 aaPredicted RBP21.95■■□□□ 1.1
UBR3-211ENST00000487689 PLPPR3Q6T4P5 718 aa21.91■■□□□ 1.1
UBR3-211ENST00000487689 PPP6R1Q9UPN7 881 aa21.76■■□□□ 1.07
UBR3-211ENST00000487689 ADRA2BP18089 450 aa21.68■■□□□ 1.06
UBR3-211ENST00000487689 MAPK8IP2Q13387 824 aaPredicted RBP20.04■□□□□ 0.8
UBR3-211ENST00000487689 DMRT2Q9Y5R5 561 aa19.94■□□□□ 0.78
UBR3-211ENST00000487689 SCAF1Q9H7N4 1312 aaKnown RBP19.8■□□□□ 0.76
UBR3-211ENST00000487689 CACNB1Q02641 598 aaPredicted RBP19.32■□□□□ 0.68
UBR3-211ENST00000487689 DCAF8L1A6NGE4 600 aa19.21■□□□□ 0.67
UBR3-211ENST00000487689 PPP4R3CPQ6ZMV5 832 aa19.18■□□□□ 0.66
UBR3-211ENST00000487689 HOXD11P31277 338 aaPredicted RBP19.05■□□□□ 0.64
UBR3-211ENST00000487689 RNF39Q9H2S5 420 aa18.91■□□□□ 0.62
UBR3-211ENST00000487689 CNKSR2Q8WXI2 1034 aa18.89■□□□□ 0.61
UBR3-211ENST00000487689 RNF216Q9NWF9 866 aaPredicted RBP18.81■□□□□ 0.6
UBR3-211ENST00000487689 C1QBPQ07021 282 aaKnown RBP18.6■□□□□ 0.57
UBR3-211ENST00000487689 DNAJC5BQ9UF47 199 aa18.43■□□□□ 0.54
UBR3-211ENST00000487689 NCBP3Q53F19 620 aaKnown RBP18.31■□□□□ 0.52
UBR3-211ENST00000487689 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.19■□□□□ 0.53e-6■□□□□ 10.7
UBR3-211ENST00000487689 NPM3O75607 178 aaKnown RBP18.05■□□□□ 0.48
UBR3-211ENST00000487689 U3KPZ7 1027 aaPredicted RBP17.75■□□□□ 0.43
UBR3-211ENST00000487689 SPINK5Q9NQ38 1064 aaPredicted RBP17.63■□□□□ 0.41
UBR3-211ENST00000487689 CAPN15O75808 1086 aa17.62■□□□□ 0.41
UBR3-211ENST00000487689 DSG3P32926 999 aa17.58■□□□□ 0.4
UBR3-211ENST00000487689 POTEHQ6S545 545 aa17.43■□□□□ 0.38
UBR3-211ENST00000487689 KCNA4P22459 653 aa17.37■□□□□ 0.37
UBR3-211ENST00000487689 SLC4A2P04920 1241 aa17.34■□□□□ 0.37
UBR3-211ENST00000487689 TRHP20396 242 aaPredicted RBP17.25■□□□□ 0.35
UBR3-211ENST00000487689 ABCB7O75027 752 aa17.2■□□□□ 0.34
UBR3-211ENST00000487689 APLP2Q06481 763 aa17.19■□□□□ 0.34
UBR3-211ENST00000487689 ZNF219Q9P2Y4 722 aaPredicted RBP17.17■□□□□ 0.34
UBR3-211ENST00000487689 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
UBR3-211ENST00000487689 HNRNPUL2Q1KMD3 747 aaKnown RBP17.08■□□□□ 0.32
UBR3-211ENST00000487689 SAMD1Q6SPF0 538 aaPredicted RBP16.98■□□□□ 0.31
UBR3-211ENST00000487689 RBM42Q9BTD8 480 aaKnown RBP16.77■□□□□ 0.28
UBR3-211ENST00000487689 MYCNP04198 464 aaPredicted RBP16.69■□□□□ 0.26
UBR3-211ENST00000487689 POLA2Q14181 598 aa16.68■□□□□ 0.26
UBR3-211ENST00000487689 CHRDL2Q6WN34 429 aa16.58■□□□□ 0.24
UBR3-211ENST00000487689 ATF5Q9Y2D1 282 aaPredicted RBP16.37■□□□□ 0.21
UBR3-211ENST00000487689 SLC4A1APQ9BWU0 796 aaKnown RBP16.32■□□□□ 0.2
UBR3-211ENST00000487689 FOXD4L1Q9NU39 408 aa16.32■□□□□ 0.2
UBR3-211ENST00000487689 AKT1S1Q96B36 256 aa16.31■□□□□ 0.2
UBR3-211ENST00000487689 ZBTB12Q9Y330 459 aaPredicted RBP16.28■□□□□ 0.2
UBR3-211ENST00000487689 OSCARQ8IYS5 282 aa16.18■□□□□ 0.18
UBR3-211ENST00000487689 REM2Q8IYK8 340 aaPredicted RBP16.17■□□□□ 0.18
UBR3-211ENST00000487689 SP7Q8TDD2 431 aaPredicted RBP16.16■□□□□ 0.18
UBR3-211ENST00000487689 PIP4P2Q8N4L2 257 aa16.11■□□□□ 0.17
UBR3-211ENST00000487689 PITPNM1O00562 1244 aa16.02■□□□□ 0.16
UBR3-211ENST00000487689 ZBTB22O15209 634 aa15.97■□□□□ 0.15
UBR3-211ENST00000487689 FXR2P51116 673 aaKnown RBP eCLIP15.94■□□□□ 0.141e-6■□□□□ 8.3
UBR3-211ENST00000487689 HAX1O00165 279 aa15.93■□□□□ 0.14
UBR3-211ENST00000487689 ATXN8OSP0DMR3 200 aa15.83■□□□□ 0.12
UBR3-211ENST00000487689 SPDYE2BA6NHP3 402 aa15.75■□□□□ 0.11
UBR3-211ENST00000487689 SPDYE6P0CI01 402 aa15.75■□□□□ 0.11
UBR3-211ENST00000487689 FBLN2P98095 1184 aa15.75■□□□□ 0.11
UBR3-211ENST00000487689 SPDYE2Q495Y8 402 aa15.75■□□□□ 0.11
UBR3-211ENST00000487689 EVX2Q03828 476 aa15.7■□□□□ 0.1
UBR3-211ENST00000487689 CLEC11AQ9Y240 323 aa15.61■□□□□ 0.09
UBR3-211ENST00000487689 PRKAR2AP13861 404 aaKnown RBP15.6■□□□□ 0.09
UBR3-211ENST00000487689 MKRN4PQ13434 485 aaPredicted RBP15.58■□□□□ 0.08
UBR3-211ENST00000487689 SPDYE1Q8NFV5 336 aaPredicted RBP15.58■□□□□ 0.08
UBR3-211ENST00000487689 ZNF692Q9BU19 519 aaPredicted RBP15.53■□□□□ 0.08
UBR3-211ENST00000487689 SSUH2Q9Y2M2 353 aa15.5■□□□□ 0.07
UBR3-211ENST00000487689 C19orf67A6NJJ6 358 aa15.44■□□□□ 0.06
UBR3-211ENST00000487689 CHADLQ6NUI6 762 aa15.36■□□□□ 0.05
UBR3-211ENST00000487689 GABBR2O75899 941 aa15.33■□□□□ 0.04
UBR3-211ENST00000487689 PABPN1Q86U42 306 aaKnown RBP eCLIP15.29■□□□□ 0.04
UBR3-211ENST00000487689 PRR29P0C7W0 189 aa15.28■□□□□ 0.04
UBR3-211ENST00000487689 LHX8Q68G74 356 aa15.16■□□□□ 0.02
UBR3-211ENST00000487689 CD44P16070 742 aaKnown RBP15.08■□□□□ 0
UBR3-211ENST00000487689 FARP1Q9Y4F1 1045 aaPredicted RBP15.06■□□□□ 0
UBR3-211ENST00000487689 POTEIP0CG38 1075 aa15□□□□□ -0.01
UBR3-211ENST00000487689 CLCN6P51797 869 aa14.89□□□□□ -0.03
UBR3-211ENST00000487689 CSRNP3Q8WYN3 585 aa14.87□□□□□ -0.03
UBR3-211ENST00000487689 DCBLD2Q96PD2 775 aa14.83□□□□□ -0.04
UBR3-211ENST00000487689 ZRANB1Q9UGI0 708 aa14.82□□□□□ -0.04
UBR3-211ENST00000487689 ZNF579Q8NAF0 562 aaKnown RBP14.81□□□□□ -0.04
UBR3-211ENST00000487689 CREBZFQ9NS37 354 aa14.81□□□□□ -0.04
UBR3-211ENST00000487689 STAG3Q9UJ98 1225 aa14.76□□□□□ -0.05
UBR3-211ENST00000487689 GALR2O43603 387 aaPredicted RBP14.68□□□□□ -0.06
UBR3-211ENST00000487689 EHMT2Q96KQ7 1210 aa14.67□□□□□ -0.06
UBR3-211ENST00000487689 SPDYE4A6NLX3 237 aa14.65□□□□□ -0.06
UBR3-211ENST00000487689 PAK3O75914 559 aaPredicted RBP14.59□□□□□ -0.07
UBR3-211ENST00000487689 PHF12Q96QT6 1004 aa14.59□□□□□ -0.07
UBR3-211ENST00000487689 PLSCR2Q9NRY7 297 aa14.54□□□□□ -0.08
UBR3-211ENST00000487689 NPM1P06748 294 aaKnown RBP eCLIP14.52□□□□□ -0.09
UBR3-211ENST00000487689 OTUD5Q96G74 571 aa14.52□□□□□ -0.09
UBR3-211ENST00000487689 POTEB2H3BUK9 544 aa14.5□□□□□ -0.09
UBR3-211ENST00000487689 MNX1P50219 401 aaPredicted RBP14.49□□□□□ -0.09
UBR3-211ENST00000487689 PELP1Q8IZL8 1130 aaKnown RBP14.44□□□□□ -0.1
UBR3-211ENST00000487689 MS4A3Q96HJ5 214 aa14.37□□□□□ -0.11
UBR3-211ENST00000487689 ASTLQ6HA08 431 aaPredicted RBP14.33□□□□□ -0.12
UBR3-211ENST00000487689 METRNQ9UJH8 293 aa14.32□□□□□ -0.12
UBR3-211ENST00000487689 ATMINO43313 823 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms