RNA–Protein interactions for RNA: ENST00000484596.1

UBR3-210, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 2

Gene UBR3, Length 791 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-210ENST00000484596 AEBP2Q6ZN18 517 aaPredicted RBP38.02■■■■□ 3.68
UBR3-210ENST00000484596 CHIC1Q5VXU3 224 aa36.61■■■■□ 3.45
UBR3-210ENST00000484596 SENP3Q9H4L4 574 aaPredicted RBP32.3■■■□□ 2.76
UBR3-210ENST00000484596 PHF23Q9BUL5 403 aaPredicted RBP32.19■■■□□ 2.74
UBR3-210ENST00000484596 FOXD1Q16676 465 aa30.07■■■□□ 2.4
UBR3-210ENST00000484596 PLPPR3Q6T4P5 718 aa29.49■■■□□ 2.31
UBR3-210ENST00000484596 PPP6R1Q9UPN7 881 aa28.58■■■□□ 2.17
UBR3-210ENST00000484596 ADRA2BP18089 450 aa28.51■■■□□ 2.15
UBR3-210ENST00000484596 PIAS4Q8N2W9 510 aaPredicted RBP28.22■■■□□ 2.11
UBR3-210ENST00000484596 MSH5O43196 834 aa27.88■■■□□ 2.05
UBR3-210ENST00000484596 POTEDQ86YR6 584 aa26.31■■□□□ 1.8
UBR3-210ENST00000484596 MAPK8IP2Q13387 824 aaPredicted RBP26.04■■□□□ 1.76
UBR3-210ENST00000484596 SCAF1Q9H7N4 1312 aaKnown RBP26.03■■□□□ 1.76
UBR3-210ENST00000484596 PPP4R3CPQ6ZMV5 832 aa25.95■■□□□ 1.74
UBR3-210ENST00000484596 DMRT2Q9Y5R5 561 aa25.71■■□□□ 1.71
UBR3-210ENST00000484596 CNKSR2Q8WXI2 1034 aa25.32■■□□□ 1.64
UBR3-210ENST00000484596 NCBP3Q53F19 620 aaKnown RBP25.09■■□□□ 1.61
UBR3-210ENST00000484596 HOXD11P31277 338 aaPredicted RBP24.98■■□□□ 1.59
UBR3-210ENST00000484596 RNF216Q9NWF9 866 aaPredicted RBP24.94■■□□□ 1.58
UBR3-210ENST00000484596 KCNA4P22459 653 aa24.79■■□□□ 1.56
UBR3-210ENST00000484596 NPM3O75607 178 aaKnown RBP24.76■■□□□ 1.55
UBR3-210ENST00000484596 DCAF8L1A6NGE4 600 aa24.65■■□□□ 1.54
UBR3-210ENST00000484596 DNAJC5BQ9UF47 199 aa24.07■■□□□ 1.44
UBR3-210ENST00000484596 RNF39Q9H2S5 420 aa23.87■■□□□ 1.41
UBR3-210ENST00000484596 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.82■■□□□ 1.4
UBR3-210ENST00000484596 CACNB1Q02641 598 aaPredicted RBP23.62■■□□□ 1.37
UBR3-210ENST00000484596 C1QBPQ07021 282 aaKnown RBP23.54■■□□□ 1.36
UBR3-210ENST00000484596 SLC4A2P04920 1241 aa23.51■■□□□ 1.35
UBR3-210ENST00000484596 SLC4A1APQ9BWU0 796 aaKnown RBP23.5■■□□□ 1.35
UBR3-210ENST00000484596 U3KPZ7 1027 aaPredicted RBP23.38■■□□□ 1.33
UBR3-210ENST00000484596 FOXD4L1Q9NU39 408 aa22.93■■□□□ 1.26
UBR3-210ENST00000484596 SPINK5Q9NQ38 1064 aaPredicted RBP22.9■■□□□ 1.26
UBR3-210ENST00000484596 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.87■■□□□ 1.25
UBR3-210ENST00000484596 HNRNPUL2Q1KMD3 747 aaKnown RBP22.87■■□□□ 1.25
UBR3-210ENST00000484596 MYCNP04198 464 aaPredicted RBP22.86■■□□□ 1.25
UBR3-210ENST00000484596 ZBTB22O15209 634 aa22.81■■□□□ 1.24
UBR3-210ENST00000484596 CAPN15O75808 1086 aa22.81■■□□□ 1.24
UBR3-210ENST00000484596 SAMD1Q6SPF0 538 aaPredicted RBP22.77■■□□□ 1.24
UBR3-210ENST00000484596 APLP2Q06481 763 aa22.73■■□□□ 1.23
UBR3-210ENST00000484596 TRHP20396 242 aaPredicted RBP22.59■■□□□ 1.21
UBR3-210ENST00000484596 DSG3P32926 999 aa22.55■■□□□ 1.2
UBR3-210ENST00000484596 ZNF219Q9P2Y4 722 aaPredicted RBP22.54■■□□□ 1.2
UBR3-210ENST00000484596 ABCB7O75027 752 aa22.35■■□□□ 1.17
UBR3-210ENST00000484596 ATF5Q9Y2D1 282 aaPredicted RBP22.35■■□□□ 1.17
UBR3-210ENST00000484596 EHMT2Q96KQ7 1210 aa22.27■■□□□ 1.16
UBR3-210ENST00000484596 CSRNP3Q8WYN3 585 aa22.26■■□□□ 1.15
UBR3-210ENST00000484596 ATXN8OSP0DMR3 200 aa22.17■■□□□ 1.14
UBR3-210ENST00000484596 POLA2Q14181 598 aa22.11■■□□□ 1.13
UBR3-210ENST00000484596 ZBTB12Q9Y330 459 aaPredicted RBP21.65■■□□□ 1.06
UBR3-210ENST00000484596 RBM42Q9BTD8 480 aaKnown RBP21.46■■□□□ 1.03
UBR3-210ENST00000484596 FBLN2P98095 1184 aa21.38■■□□□ 1.01
UBR3-210ENST00000484596 OSCARQ8IYS5 282 aa21.37■■□□□ 1.01
UBR3-210ENST00000484596 MKRN4PQ13434 485 aaPredicted RBP21.33■■□□□ 1.01
UBR3-210ENST00000484596 AKT1S1Q96B36 256 aa21.11■□□□□ 0.97
UBR3-210ENST00000484596 SPDYE2BA6NHP3 402 aa21.06■□□□□ 0.96
UBR3-210ENST00000484596 SPDYE6P0CI01 402 aa21.06■□□□□ 0.96
UBR3-210ENST00000484596 SPDYE2Q495Y8 402 aa21.06■□□□□ 0.96
UBR3-210ENST00000484596 REM2Q8IYK8 340 aaPredicted RBP20.93■□□□□ 0.94
UBR3-210ENST00000484596 ZNF692Q9BU19 519 aaPredicted RBP20.92■□□□□ 0.94
UBR3-210ENST00000484596 SSUH2Q9Y2M2 353 aa20.84■□□□□ 0.93
UBR3-210ENST00000484596 CHRDL2Q6WN34 429 aa20.8■□□□□ 0.92
UBR3-210ENST00000484596 POTEHQ6S545 545 aa20.73■□□□□ 0.91
UBR3-210ENST00000484596 PITPNM1O00562 1244 aa20.69■□□□□ 0.9
UBR3-210ENST00000484596 PABPN1Q86U42 306 aaKnown RBP eCLIP20.63■□□□□ 0.89
UBR3-210ENST00000484596 SPDYE4A6NLX3 237 aa20.59■□□□□ 0.89
UBR3-210ENST00000484596 SPDYE1Q8NFV5 336 aaPredicted RBP20.55■□□□□ 0.88
UBR3-210ENST00000484596 CLEC11AQ9Y240 323 aa20.51■□□□□ 0.87
UBR3-210ENST00000484596 PIP4P2Q8N4L2 257 aa20.44■□□□□ 0.86
UBR3-210ENST00000484596 FXR2P51116 673 aaKnown RBP eCLIP20.4■□□□□ 0.86
UBR3-210ENST00000484596 PRR29P0C7W0 189 aa20.25■□□□□ 0.83
UBR3-210ENST00000484596 PRKAR2AP13861 404 aaKnown RBP20.17■□□□□ 0.82
UBR3-210ENST00000484596 PROM2Q8N271 834 aa20.17■□□□□ 0.82
UBR3-210ENST00000484596 STAG3Q9UJ98 1225 aa20.15■□□□□ 0.82
UBR3-210ENST00000484596 FKBP8Q14318 412 aa20.14■□□□□ 0.81
UBR3-210ENST00000484596 CHADLQ6NUI6 762 aa20.09■□□□□ 0.81
UBR3-210ENST00000484596 HAX1O00165 279 aa19.92■□□□□ 0.78
UBR3-210ENST00000484596 CREBZFQ9NS37 354 aa19.89■□□□□ 0.77
UBR3-210ENST00000484596 FARP1Q9Y4F1 1045 aaPredicted RBP19.82■□□□□ 0.76
UBR3-210ENST00000484596 EVX2Q03828 476 aa19.74■□□□□ 0.75
UBR3-210ENST00000484596 C19orf67A6NJJ6 358 aa19.73■□□□□ 0.75
UBR3-210ENST00000484596 SP7Q8TDD2 431 aaPredicted RBP19.68■□□□□ 0.74
UBR3-210ENST00000484596 MNX1P50219 401 aaPredicted RBP19.62■□□□□ 0.73
UBR3-210ENST00000484596 MIER1Q8N108 512 aa19.59■□□□□ 0.73
UBR3-210ENST00000484596 CD44P16070 742 aaKnown RBP19.56■□□□□ 0.72
UBR3-210ENST00000484596 FBXO3Q9UK99 471 aa19.53■□□□□ 0.72
UBR3-210ENST00000484596 NPM1P06748 294 aaKnown RBP eCLIP19.52■□□□□ 0.72
UBR3-210ENST00000484596 PLCD3Q8N3E9 789 aa19.5■□□□□ 0.71
UBR3-210ENST00000484596 PLEKHG5O94827 1062 aa19.49■□□□□ 0.71
UBR3-210ENST00000484596 ZRANB1Q9UGI0 708 aa19.37■□□□□ 0.69
UBR3-210ENST00000484596 GABBR2O75899 941 aa19.31■□□□□ 0.68
UBR3-210ENST00000484596 PAK3O75914 559 aaPredicted RBP19.3■□□□□ 0.68
UBR3-210ENST00000484596 VASPP50552 380 aaPredicted RBP19.3■□□□□ 0.68
UBR3-210ENST00000484596 ZNF579Q8NAF0 562 aaKnown RBP19.27■□□□□ 0.68
UBR3-210ENST00000484596 ZBTB47Q9UFB7 747 aaPredicted RBP19.27■□□□□ 0.68
UBR3-210ENST00000484596 TSPYL2Q9H2G4 693 aaPredicted RBP19.21■□□□□ 0.67
UBR3-210ENST00000484596 RASEFQ8IZ41 740 aa19.19■□□□□ 0.66
UBR3-210ENST00000484596 PHF12Q96QT6 1004 aa19.16■□□□□ 0.66
UBR3-210ENST00000484596 CLCN6P51797 869 aa19.15■□□□□ 0.66
UBR3-210ENST00000484596 NUBP1P53384 320 aa19.14■□□□□ 0.65
UBR3-210ENST00000484596 KLHL34Q8N239 644 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms