RNA–Protein interactions for RNA: ENST00000484520.1

SPTA1-206, Transcript of spectrin alpha, erythrocytic 1, humanhuman

TSL 3

Gene SPTA1, Length 769 nt, Biotype retained intron, Subcellular localisation Cytosol, Dendrite .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1-206ENST00000484520 AEBP2Q6ZN18 517 aaPredicted RBP24.43■■□□□ 1.5
SPTA1-206ENST00000484520 CHIC1Q5VXU3 224 aa23.1■■□□□ 1.29
SPTA1-206ENST00000484520 SENP3Q9H4L4 574 aaPredicted RBP20.82■□□□□ 0.92
SPTA1-206ENST00000484520 PHF23Q9BUL5 403 aaPredicted RBP20.57■□□□□ 0.88
SPTA1-206ENST00000484520 FOXD1Q16676 465 aa19.45■□□□□ 0.7
SPTA1-206ENST00000484520 PLPPR3Q6T4P5 718 aa18.42■□□□□ 0.54
SPTA1-206ENST00000484520 POTEDQ86YR6 584 aa18.21■□□□□ 0.51
SPTA1-206ENST00000484520 MSH5O43196 834 aa18.2■□□□□ 0.5
SPTA1-206ENST00000484520 PIAS4Q8N2W9 510 aaPredicted RBP18.15■□□□□ 0.5
SPTA1-206ENST00000484520 PPP6R1Q9UPN7 881 aa18.14■□□□□ 0.49
SPTA1-206ENST00000484520 ADRA2BP18089 450 aa18.08■□□□□ 0.48
SPTA1-206ENST00000484520 MAPK8IP2Q13387 824 aaPredicted RBP16.64■□□□□ 0.25
SPTA1-206ENST00000484520 DMRT2Q9Y5R5 561 aa16.51■□□□□ 0.23
SPTA1-206ENST00000484520 SCAF1Q9H7N4 1312 aaKnown RBP16.5■□□□□ 0.23
SPTA1-206ENST00000484520 PPP4R3CPQ6ZMV5 832 aa16.16■□□□□ 0.18
SPTA1-206ENST00000484520 DCAF8L1A6NGE4 600 aa15.88■□□□□ 0.13
SPTA1-206ENST00000484520 HOXD11P31277 338 aaPredicted RBP15.86■□□□□ 0.13
SPTA1-206ENST00000484520 CNKSR2Q8WXI2 1034 aa15.85■□□□□ 0.13
SPTA1-206ENST00000484520 RNF216Q9NWF9 866 aaPredicted RBP15.72■□□□□ 0.11
SPTA1-206ENST00000484520 CACNB1Q02641 598 aaPredicted RBP15.7■□□□□ 0.1
SPTA1-206ENST00000484520 RNF39Q9H2S5 420 aa15.53■□□□□ 0.08
SPTA1-206ENST00000484520 NCBP3Q53F19 620 aaKnown RBP15.49■□□□□ 0.07
SPTA1-206ENST00000484520 NPM3O75607 178 aaKnown RBP15.29■□□□□ 0.04
SPTA1-206ENST00000484520 C1QBPQ07021 282 aaKnown RBP15.29■□□□□ 0.04
SPTA1-206ENST00000484520 DNAJC5BQ9UF47 199 aa15.29■□□□□ 0.04
SPTA1-206ENST00000484520 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.14■□□□□ 0.014e-11■■□□□ 13.7
SPTA1-206ENST00000484520 KCNA4P22459 653 aa14.93□□□□□ -0.02
SPTA1-206ENST00000484520 U3KPZ7 1027 aaPredicted RBP14.81□□□□□ -0.04
SPTA1-206ENST00000484520 SPINK5Q9NQ38 1064 aaPredicted RBP14.64□□□□□ -0.07
SPTA1-206ENST00000484520 SLC4A2P04920 1241 aa14.62□□□□□ -0.07
SPTA1-206ENST00000484520 CAPN15O75808 1086 aa14.61□□□□□ -0.07
SPTA1-206ENST00000484520 DSG3P32926 999 aa14.53□□□□□ -0.08
SPTA1-206ENST00000484520 TRHP20396 242 aaPredicted RBP14.37□□□□□ -0.11
SPTA1-206ENST00000484520 APLP2Q06481 763 aa14.36□□□□□ -0.11
SPTA1-206ENST00000484520 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.33□□□□□ -0.12
SPTA1-206ENST00000484520 HNRNPUL2Q1KMD3 747 aaKnown RBP14.33□□□□□ -0.12
SPTA1-206ENST00000484520 ZNF219Q9P2Y4 722 aaPredicted RBP14.29□□□□□ -0.12
SPTA1-206ENST00000484520 ABCB7O75027 752 aa14.28□□□□□ -0.12
SPTA1-206ENST00000484520 SAMD1Q6SPF0 538 aaPredicted RBP14.25□□□□□ -0.13
SPTA1-206ENST00000484520 MYCNP04198 464 aaPredicted RBP14.12□□□□□ -0.15
SPTA1-206ENST00000484520 POTEHQ6S545 545 aa14.08□□□□□ -0.16
SPTA1-206ENST00000484520 SLC4A1APQ9BWU0 796 aaKnown RBP14.07□□□□□ -0.16
SPTA1-206ENST00000484520 POLA2Q14181 598 aa13.95□□□□□ -0.18
SPTA1-206ENST00000484520 FOXD4L1Q9NU39 408 aa13.94□□□□□ -0.18
SPTA1-206ENST00000484520 RBM42Q9BTD8 480 aaKnown RBP13.85□□□□□ -0.19
SPTA1-206ENST00000484520 ATF5Q9Y2D1 282 aaPredicted RBP13.84□□□□□ -0.19
SPTA1-206ENST00000484520 ZBTB22O15209 634 aa13.72□□□□□ -0.21
SPTA1-206ENST00000484520 ZBTB12Q9Y330 459 aaPredicted RBP13.62□□□□□ -0.23
SPTA1-206ENST00000484520 CHRDL2Q6WN34 429 aa13.59□□□□□ -0.23
SPTA1-206ENST00000484520 AKT1S1Q96B36 256 aa13.52□□□□□ -0.25
SPTA1-206ENST00000484520 OSCARQ8IYS5 282 aa13.51□□□□□ -0.25
SPTA1-206ENST00000484520 ATXN8OSP0DMR3 200 aa13.5□□□□□ -0.25
SPTA1-206ENST00000484520 REM2Q8IYK8 340 aaPredicted RBP13.41□□□□□ -0.26
SPTA1-206ENST00000484520 FBLN2P98095 1184 aa13.28□□□□□ -0.28
SPTA1-206ENST00000484520 PITPNM1O00562 1244 aa13.27□□□□□ -0.29
SPTA1-206ENST00000484520 PIP4P2Q8N4L2 257 aa13.26□□□□□ -0.29
SPTA1-206ENST00000484520 SPDYE2BA6NHP3 402 aa13.21□□□□□ -0.29
SPTA1-206ENST00000484520 SPDYE6P0CI01 402 aa13.21□□□□□ -0.29
SPTA1-206ENST00000484520 SPDYE2Q495Y8 402 aa13.21□□□□□ -0.29
SPTA1-206ENST00000484520 MKRN4PQ13434 485 aaPredicted RBP13.18□□□□□ -0.3
SPTA1-206ENST00000484520 FXR2P51116 673 aaKnown RBP eCLIP13.16□□□□□ -0.3
SPTA1-206ENST00000484520 SP7Q8TDD2 431 aaPredicted RBP13.11□□□□□ -0.31
SPTA1-206ENST00000484520 ZNF692Q9BU19 519 aaPredicted RBP13.07□□□□□ -0.32
SPTA1-206ENST00000484520 HAX1O00165 279 aa13.05□□□□□ -0.32
SPTA1-206ENST00000484520 CSRNP3Q8WYN3 585 aa13.03□□□□□ -0.32
SPTA1-206ENST00000484520 CLEC11AQ9Y240 323 aa13.03□□□□□ -0.32
SPTA1-206ENST00000484520 SSUH2Q9Y2M2 353 aa13.02□□□□□ -0.33
SPTA1-206ENST00000484520 SPDYE1Q8NFV5 336 aaPredicted RBP13□□□□□ -0.33
SPTA1-206ENST00000484520 PRKAR2AP13861 404 aaKnown RBP12.93□□□□□ -0.34
SPTA1-206ENST00000484520 EVX2Q03828 476 aa12.9□□□□□ -0.34
SPTA1-206ENST00000484520 PABPN1Q86U42 306 aaKnown RBP eCLIP12.87□□□□□ -0.35
SPTA1-206ENST00000484520 EHMT2Q96KQ7 1210 aa12.83□□□□□ -0.36
SPTA1-206ENST00000484520 CHADLQ6NUI6 762 aa12.79□□□□□ -0.36
SPTA1-206ENST00000484520 PRR29P0C7W0 189 aa12.78□□□□□ -0.36
SPTA1-206ENST00000484520 C19orf67A6NJJ6 358 aa12.74□□□□□ -0.37
SPTA1-206ENST00000484520 GABBR2O75899 941 aa12.58□□□□□ -0.4
SPTA1-206ENST00000484520 FARP1Q9Y4F1 1045 aaPredicted RBP12.56□□□□□ -0.4
SPTA1-206ENST00000484520 SPDYE4A6NLX3 237 aa12.52□□□□□ -0.41
SPTA1-206ENST00000484520 CD44P16070 742 aaKnown RBP12.51□□□□□ -0.41
SPTA1-206ENST00000484520 STAG3Q9UJ98 1225 aa12.47□□□□□ -0.41
SPTA1-206ENST00000484520 CREBZFQ9NS37 354 aa12.44□□□□□ -0.42
SPTA1-206ENST00000484520 ZRANB1Q9UGI0 708 aa12.34□□□□□ -0.43
SPTA1-206ENST00000484520 POTEIP0CG38 1075 aa12.32□□□□□ -0.44
SPTA1-206ENST00000484520 CLCN6P51797 869 aa12.31□□□□□ -0.44
SPTA1-206ENST00000484520 LHX8Q68G74 356 aa12.31□□□□□ -0.44
SPTA1-206ENST00000484520 ZNF579Q8NAF0 562 aaKnown RBP12.29□□□□□ -0.44
SPTA1-206ENST00000484520 DCBLD2Q96PD2 775 aa12.23□□□□□ -0.45
SPTA1-206ENST00000484520 NPM1P06748 294 aaKnown RBP eCLIP12.2□□□□□ -0.46
SPTA1-206ENST00000484520 MNX1P50219 401 aaPredicted RBP12.2□□□□□ -0.46
SPTA1-206ENST00000484520 PAK3O75914 559 aaPredicted RBP12.19□□□□□ -0.46
SPTA1-206ENST00000484520 GALR2O43603 387 aaPredicted RBP12.18□□□□□ -0.46
SPTA1-206ENST00000484520 PROM2Q8N271 834 aa12.17□□□□□ -0.46
SPTA1-206ENST00000484520 PHF12Q96QT6 1004 aa12.16□□□□□ -0.46
SPTA1-206ENST00000484520 TSPYL2Q9H2G4 693 aaPredicted RBP12.01□□□□□ -0.49
SPTA1-206ENST00000484520 MS4A3Q96HJ5 214 aa11.99□□□□□ -0.49
SPTA1-206ENST00000484520 MIER1Q8N108 512 aa11.97□□□□□ -0.49
SPTA1-206ENST00000484520 PLSCR2Q9NRY7 297 aa11.97□□□□□ -0.49
SPTA1-206ENST00000484520 PELP1Q8IZL8 1130 aaKnown RBP11.96□□□□□ -0.49
SPTA1-206ENST00000484520 PLEKHG5O94827 1062 aa11.94□□□□□ -0.5
SPTA1-206ENST00000484520 POTEB2H3BUK9 544 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms