RNA–Protein interactions for RNA: ENST00000484275.1

SCAF11-207, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-207ENST00000484275 AEBP2Q6ZN18 517 aaPredicted RBP31.45■■■□□ 2.63
SCAF11-207ENST00000484275 CHIC1Q5VXU3 224 aa30.06■■■□□ 2.4
SCAF11-207ENST00000484275 SENP3Q9H4L4 574 aaPredicted RBP26.64■■□□□ 1.86
SCAF11-207ENST00000484275 PHF23Q9BUL5 403 aaPredicted RBP26.44■■□□□ 1.82
SCAF11-207ENST00000484275 FOXD1Q16676 465 aa24.89■■□□□ 1.58
SCAF11-207ENST00000484275 PLPPR3Q6T4P5 718 aa24.08■■□□□ 1.45
SCAF11-207ENST00000484275 PPP6R1Q9UPN7 881 aa23.54■■□□□ 1.36
SCAF11-207ENST00000484275 ADRA2BP18089 450 aa23.45■■□□□ 1.34
SCAF11-207ENST00000484275 PIAS4Q8N2W9 510 aaPredicted RBP23.28■■□□□ 1.32
SCAF11-207ENST00000484275 MSH5O43196 834 aa23.08■■□□□ 1.29
SCAF11-207ENST00000484275 POTEDQ86YR6 584 aa22.15■■□□□ 1.14
SCAF11-207ENST00000484275 MAPK8IP2Q13387 824 aaPredicted RBP21.48■■□□□ 1.03
SCAF11-207ENST00000484275 SCAF1Q9H7N4 1312 aaKnown RBP21.3■■□□□ 1
SCAF11-207ENST00000484275 DMRT2Q9Y5R5 561 aa21.21■□□□□ 0.99
SCAF11-207ENST00000484275 PPP4R3CPQ6ZMV5 832 aa21.19■□□□□ 0.98
SCAF11-207ENST00000484275 CNKSR2Q8WXI2 1034 aa20.7■□□□□ 0.9
SCAF11-207ENST00000484275 HOXD11P31277 338 aaPredicted RBP20.54■□□□□ 0.88
SCAF11-207ENST00000484275 RNF216Q9NWF9 866 aaPredicted RBP20.44■□□□□ 0.86
SCAF11-207ENST00000484275 NCBP3Q53F19 620 aaKnown RBP20.37■□□□□ 0.85
SCAF11-207ENST00000484275 DCAF8L1A6NGE4 600 aa20.29■□□□□ 0.84
SCAF11-207ENST00000484275 NPM3O75607 178 aaKnown RBP20.18■□□□□ 0.82
SCAF11-207ENST00000484275 KCNA4P22459 653 aa20.07■□□□□ 0.8
SCAF11-207ENST00000484275 RNF39Q9H2S5 420 aa19.79■□□□□ 0.76
SCAF11-207ENST00000484275 DNAJC5BQ9UF47 199 aa19.72■□□□□ 0.75
SCAF11-207ENST00000484275 CACNB1Q02641 598 aaPredicted RBP19.66■□□□□ 0.74
SCAF11-207ENST00000484275 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.53■□□□□ 0.72
SCAF11-207ENST00000484275 C1QBPQ07021 282 aaKnown RBP19.46■□□□□ 0.71
SCAF11-207ENST00000484275 SLC4A2P04920 1241 aa19.24■□□□□ 0.67
SCAF11-207ENST00000484275 U3KPZ7 1027 aaPredicted RBP19.21■□□□□ 0.67
SCAF11-207ENST00000484275 SLC4A1APQ9BWU0 796 aaKnown RBP18.94■□□□□ 0.62
SCAF11-207ENST00000484275 SPINK5Q9NQ38 1064 aaPredicted RBP18.88■□□□□ 0.61
SCAF11-207ENST00000484275 CAPN15O75808 1086 aa18.75■□□□□ 0.59
SCAF11-207ENST00000484275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.63■□□□□ 0.57
SCAF11-207ENST00000484275 DSG3P32926 999 aa18.63■□□□□ 0.57
SCAF11-207ENST00000484275 HNRNPUL2Q1KMD3 747 aaKnown RBP18.63■□□□□ 0.57
SCAF11-207ENST00000484275 MYCNP04198 464 aaPredicted RBP18.6■□□□□ 0.57
SCAF11-207ENST00000484275 SAMD1Q6SPF0 538 aaPredicted RBP18.58■□□□□ 0.56
SCAF11-207ENST00000484275 FOXD4L1Q9NU39 408 aa18.57■□□□□ 0.56
SCAF11-207ENST00000484275 TRHP20396 242 aaPredicted RBP18.54■□□□□ 0.56
SCAF11-207ENST00000484275 APLP2Q06481 763 aa18.54■□□□□ 0.56
SCAF11-207ENST00000484275 ZBTB22O15209 634 aa18.52■□□□□ 0.56
SCAF11-207ENST00000484275 ZNF219Q9P2Y4 722 aaPredicted RBP18.46■□□□□ 0.55
SCAF11-207ENST00000484275 ABCB7O75027 752 aa18.4■□□□□ 0.54
SCAF11-207ENST00000484275 ATF5Q9Y2D1 282 aaPredicted RBP18.28■□□□□ 0.52
SCAF11-207ENST00000484275 POLA2Q14181 598 aa18.12■□□□□ 0.49
SCAF11-207ENST00000484275 ATXN8OSP0DMR3 200 aa17.95■□□□□ 0.46
SCAF11-207ENST00000484275 CSRNP3Q8WYN3 585 aa17.86■□□□□ 0.45
SCAF11-207ENST00000484275 EHMT2Q96KQ7 1210 aa17.75■□□□□ 0.43
SCAF11-207ENST00000484275 ZBTB12Q9Y330 459 aaPredicted RBP17.68■□□□□ 0.42
SCAF11-207ENST00000484275 RBM42Q9BTD8 480 aaKnown RBP17.66■□□□□ 0.42
SCAF11-207ENST00000484275 OSCARQ8IYS5 282 aa17.55■□□□□ 0.4
SCAF11-207ENST00000484275 MKRN4PQ13434 485 aaPredicted RBP17.43■□□□□ 0.38
SCAF11-207ENST00000484275 POTEHQ6S545 545 aa17.39■□□□□ 0.37
SCAF11-207ENST00000484275 FBLN2P98095 1184 aa17.38■□□□□ 0.37
SCAF11-207ENST00000484275 AKT1S1Q96B36 256 aa17.36■□□□□ 0.37
SCAF11-207ENST00000484275 CHRDL2Q6WN34 429 aa17.24■□□□□ 0.35
SCAF11-207ENST00000484275 REM2Q8IYK8 340 aaPredicted RBP17.24■□□□□ 0.35
SCAF11-207ENST00000484275 SPDYE2BA6NHP3 402 aa17.21■□□□□ 0.35
SCAF11-207ENST00000484275 SPDYE6P0CI01 402 aa17.21■□□□□ 0.35
SCAF11-207ENST00000484275 SPDYE2Q495Y8 402 aa17.21■□□□□ 0.35
SCAF11-207ENST00000484275 PITPNM1O00562 1244 aa17.07■□□□□ 0.32
SCAF11-207ENST00000484275 SSUH2Q9Y2M2 353 aa17.06■□□□□ 0.32
SCAF11-207ENST00000484275 ZNF692Q9BU19 519 aaPredicted RBP17.05■□□□□ 0.32
SCAF11-207ENST00000484275 PIP4P2Q8N4L2 257 aa16.93■□□□□ 0.3
SCAF11-207ENST00000484275 FXR2P51116 673 aaKnown RBP eCLIP16.86■□□□□ 0.29
SCAF11-207ENST00000484275 PABPN1Q86U42 306 aaKnown RBP eCLIP16.83■□□□□ 0.28
SCAF11-207ENST00000484275 SPDYE1Q8NFV5 336 aaPredicted RBP16.82■□□□□ 0.28
SCAF11-207ENST00000484275 CLEC11AQ9Y240 323 aa16.81■□□□□ 0.28
SCAF11-207ENST00000484275 SPDYE4A6NLX3 237 aa16.67■□□□□ 0.26
SCAF11-207ENST00000484275 PRKAR2AP13861 404 aaKnown RBP16.6■□□□□ 0.25
SCAF11-207ENST00000484275 PRR29P0C7W0 189 aa16.55■□□□□ 0.24
SCAF11-207ENST00000484275 CHADLQ6NUI6 762 aa16.52■□□□□ 0.24
SCAF11-207ENST00000484275 HAX1O00165 279 aa16.49■□□□□ 0.23
SCAF11-207ENST00000484275 EVX2Q03828 476 aa16.42■□□□□ 0.22
SCAF11-207ENST00000484275 SP7Q8TDD2 431 aaPredicted RBP16.42■□□□□ 0.22
SCAF11-207ENST00000484275 PROM2Q8N271 834 aa16.36■□□□□ 0.21
SCAF11-207ENST00000484275 STAG3Q9UJ98 1225 aa16.35■□□□□ 0.21
SCAF11-207ENST00000484275 C19orf67A6NJJ6 358 aa16.3■□□□□ 0.2
SCAF11-207ENST00000484275 CREBZFQ9NS37 354 aa16.28■□□□□ 0.2
SCAF11-207ENST00000484275 FARP1Q9Y4F1 1045 aaPredicted RBP16.26■□□□□ 0.19
SCAF11-207ENST00000484275 FKBP8Q14318 412 aa16.14■□□□□ 0.17
SCAF11-207ENST00000484275 CD44P16070 742 aaKnown RBP16.08■□□□□ 0.16
SCAF11-207ENST00000484275 MNX1P50219 401 aaPredicted RBP16.07■□□□□ 0.16
SCAF11-207ENST00000484275 GABBR2O75899 941 aa16■□□□□ 0.15
SCAF11-207ENST00000484275 ZRANB1Q9UGI0 708 aa15.9■□□□□ 0.14
SCAF11-207ENST00000484275 NPM1P06748 294 aaKnown RBP eCLIP15.88■□□□□ 0.13
SCAF11-207ENST00000484275 ZNF579Q8NAF0 562 aaKnown RBP15.86■□□□□ 0.13
SCAF11-207ENST00000484275 MIER1Q8N108 512 aa15.85■□□□□ 0.13
SCAF11-207ENST00000484275 PLCD3Q8N3E9 789 aa15.75■□□□□ 0.11
SCAF11-207ENST00000484275 PHF12Q96QT6 1004 aa15.75■□□□□ 0.11
SCAF11-207ENST00000484275 PAK3O75914 559 aaPredicted RBP15.74■□□□□ 0.11
SCAF11-207ENST00000484275 PLEKHG5O94827 1062 aa15.72■□□□□ 0.11
SCAF11-207ENST00000484275 POTEIP0CG38 1075 aa15.72■□□□□ 0.11
SCAF11-207ENST00000484275 CLCN6P51797 869 aa15.72■□□□□ 0.11
SCAF11-207ENST00000484275 GALR2O43603 387 aaPredicted RBP15.68■□□□□ 0.1
SCAF11-207ENST00000484275 TSPYL2Q9H2G4 693 aaPredicted RBP15.68■□□□□ 0.1
SCAF11-207ENST00000484275 RASEFQ8IZ41 740 aa15.65■□□□□ 0.1
SCAF11-207ENST00000484275 FBXO3Q9UK99 471 aa15.64■□□□□ 0.09
SCAF11-207ENST00000484275 CCDC61Q9Y6R9 512 aa15.61■□□□□ 0.09
SCAF11-207ENST00000484275 NUBP1P53384 320 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms