RNA–Protein interactions for RNA: ENST00000484077.1

RIF1-210, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 782 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-210ENST00000484077 AEBP2Q6ZN18 517 aaPredicted RBP28.69■■■□□ 2.18
RIF1-210ENST00000484077 CHIC1Q5VXU3 224 aa27.9■■■□□ 2.06
RIF1-210ENST00000484077 SENP3Q9H4L4 574 aaPredicted RBP24.54■■□□□ 1.52
RIF1-210ENST00000484077 PHF23Q9BUL5 403 aaPredicted RBP24.42■■□□□ 1.5
RIF1-210ENST00000484077 FOXD1Q16676 465 aa22.7■■□□□ 1.22
RIF1-210ENST00000484077 PLPPR3Q6T4P5 718 aa22.59■■□□□ 1.21
RIF1-210ENST00000484077 PPP6R1Q9UPN7 881 aa21.59■■□□□ 1.05
RIF1-210ENST00000484077 ADRA2BP18089 450 aa21.55■■□□□ 1.04
RIF1-210ENST00000484077 PIAS4Q8N2W9 510 aaPredicted RBP21.36■■□□□ 1.01
RIF1-210ENST00000484077 MSH5O43196 834 aa21.17■□□□□ 0.98
RIF1-210ENST00000484077 SCAF1Q9H7N4 1312 aaKnown RBP19.93■□□□□ 0.78
RIF1-210ENST00000484077 PPP4R3CPQ6ZMV5 832 aa19.8■□□□□ 0.76
RIF1-210ENST00000484077 MAPK8IP2Q13387 824 aaPredicted RBP19.6■□□□□ 0.73
RIF1-210ENST00000484077 POTEDQ86YR6 584 aa19.58■□□□□ 0.72
RIF1-210ENST00000484077 DMRT2Q9Y5R5 561 aa19.52■□□□□ 0.72
RIF1-210ENST00000484077 CNKSR2Q8WXI2 1034 aa19.37■□□□□ 0.69
RIF1-210ENST00000484077 NCBP3Q53F19 620 aaKnown RBP19.32■□□□□ 0.68
RIF1-210ENST00000484077 RNF216Q9NWF9 866 aaPredicted RBP19.06■□□□□ 0.64
RIF1-210ENST00000484077 HOXD11P31277 338 aaPredicted RBP19.05■□□□□ 0.64
RIF1-210ENST00000484077 KCNA4P22459 653 aa19■□□□□ 0.63
RIF1-210ENST00000484077 NPM3O75607 178 aaKnown RBP18.92■□□□□ 0.62
RIF1-210ENST00000484077 DNAJC5BQ9UF47 199 aa18.61■□□□□ 0.57
RIF1-210ENST00000484077 DCAF8L1A6NGE4 600 aa18.58■□□□□ 0.56
RIF1-210ENST00000484077 SLC4A1APQ9BWU0 796 aaKnown RBP18.11■□□□□ 0.49
RIF1-210ENST00000484077 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.1■□□□□ 0.49
RIF1-210ENST00000484077 RNF39Q9H2S5 420 aa18.05■□□□□ 0.48
RIF1-210ENST00000484077 SLC4A2P04920 1241 aa17.9■□□□□ 0.46
RIF1-210ENST00000484077 C1QBPQ07021 282 aaKnown RBP17.89■□□□□ 0.45
RIF1-210ENST00000484077 U3KPZ7 1027 aaPredicted RBP17.75■□□□□ 0.43
RIF1-210ENST00000484077 CACNB1Q02641 598 aaPredicted RBP17.72■□□□□ 0.43
RIF1-210ENST00000484077 FOXD4L1Q9NU39 408 aa17.67■□□□□ 0.42
RIF1-210ENST00000484077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.61■□□□□ 0.41
RIF1-210ENST00000484077 HNRNPUL2Q1KMD3 747 aaKnown RBP17.61■□□□□ 0.41
RIF1-210ENST00000484077 MYCNP04198 464 aaPredicted RBP17.57■□□□□ 0.4
RIF1-210ENST00000484077 APLP2Q06481 763 aa17.52■□□□□ 0.4
RIF1-210ENST00000484077 SAMD1Q6SPF0 538 aaPredicted RBP17.5■□□□□ 0.39
RIF1-210ENST00000484077 ZBTB22O15209 634 aa17.44■□□□□ 0.38
RIF1-210ENST00000484077 CAPN15O75808 1086 aa17.27■□□□□ 0.36
RIF1-210ENST00000484077 SPINK5Q9NQ38 1064 aaPredicted RBP17.27■□□□□ 0.36
RIF1-210ENST00000484077 ZNF219Q9P2Y4 722 aaPredicted RBP17.23■□□□□ 0.35
RIF1-210ENST00000484077 CSRNP3Q8WYN3 585 aa17.19■□□□□ 0.34
RIF1-210ENST00000484077 EHMT2Q96KQ7 1210 aa17.19■□□□□ 0.34
RIF1-210ENST00000484077 ATXN8OSP0DMR3 200 aa17.16■□□□□ 0.34
RIF1-210ENST00000484077 TRHP20396 242 aaPredicted RBP17.1■□□□□ 0.33
RIF1-210ENST00000484077 DSG3P32926 999 aa17.07■□□□□ 0.32
RIF1-210ENST00000484077 ATF5Q9Y2D1 282 aaPredicted RBP16.95■□□□□ 0.3
RIF1-210ENST00000484077 ABCB7O75027 752 aa16.85■□□□□ 0.29
RIF1-210ENST00000484077 POLA2Q14181 598 aa16.79■□□□□ 0.28
RIF1-210ENST00000484077 ZBTB12Q9Y330 459 aaPredicted RBP16.66■□□□□ 0.26
RIF1-210ENST00000484077 FBLN2P98095 1184 aa16.42■□□□□ 0.22
RIF1-210ENST00000484077 RBM42Q9BTD8 480 aaKnown RBP16.39■□□□□ 0.21
RIF1-210ENST00000484077 MKRN4PQ13434 485 aaPredicted RBP16.25■□□□□ 0.19
RIF1-210ENST00000484077 OSCARQ8IYS5 282 aa16.21■□□□□ 0.19
RIF1-210ENST00000484077 SPDYE2BA6NHP3 402 aa16.14■□□□□ 0.17
RIF1-210ENST00000484077 SPDYE6P0CI01 402 aa16.14■□□□□ 0.17
RIF1-210ENST00000484077 SPDYE2Q495Y8 402 aa16.14■□□□□ 0.17
RIF1-210ENST00000484077 AKT1S1Q96B36 256 aa16.09■□□□□ 0.17
RIF1-210ENST00000484077 ZNF692Q9BU19 519 aaPredicted RBP15.97■□□□□ 0.15
RIF1-210ENST00000484077 SSUH2Q9Y2M2 353 aa15.96■□□□□ 0.15
RIF1-210ENST00000484077 REM2Q8IYK8 340 aaPredicted RBP15.86■□□□□ 0.13
RIF1-210ENST00000484077 SPDYE4A6NLX3 237 aa15.82■□□□□ 0.12
RIF1-210ENST00000484077 PABPN1Q86U42 306 aaKnown RBP eCLIP15.72■□□□□ 0.11
RIF1-210ENST00000484077 SPDYE1Q8NFV5 336 aaPredicted RBP15.71■□□□□ 0.11
RIF1-210ENST00000484077 CHRDL2Q6WN34 429 aa15.7■□□□□ 0.1
RIF1-210ENST00000484077 PITPNM1O00562 1244 aa15.66■□□□□ 0.1
RIF1-210ENST00000484077 PROM2Q8N271 834 aa15.59■□□□□ 0.09
RIF1-210ENST00000484077 FKBP8Q14318 412 aa15.55■□□□□ 0.08
RIF1-210ENST00000484077 STAG3Q9UJ98 1225 aa15.55■□□□□ 0.08
RIF1-210ENST00000484077 CLEC11AQ9Y240 323 aa15.54■□□□□ 0.08
RIF1-210ENST00000484077 POTEHQ6S545 545 aa15.49■□□□□ 0.07
RIF1-210ENST00000484077 FXR2P51116 673 aaKnown RBP eCLIP15.47■□□□□ 0.07
RIF1-210ENST00000484077 PRR29P0C7W0 189 aa15.43■□□□□ 0.06
RIF1-210ENST00000484077 PIP4P2Q8N4L2 257 aa15.42■□□□□ 0.06
RIF1-210ENST00000484077 PRKAR2AP13861 404 aaKnown RBP15.27■□□□□ 0.04
RIF1-210ENST00000484077 FBXO3Q9UK99 471 aa15.22■□□□□ 0.03
RIF1-210ENST00000484077 CREBZFQ9NS37 354 aa15.15■□□□□ 0.02
RIF1-210ENST00000484077 CHADLQ6NUI6 762 aa15.14■□□□□ 0.01
RIF1-210ENST00000484077 PLEKHG5O94827 1062 aa15.08■□□□□ 0
RIF1-210ENST00000484077 FARP1Q9Y4F1 1045 aaPredicted RBP15.08■□□□□ 0
RIF1-210ENST00000484077 MIER1Q8N108 512 aa15.02■□□□□ -0
RIF1-210ENST00000484077 NPM1P06748 294 aaKnown RBP eCLIP14.99□□□□□ -0.01
RIF1-210ENST00000484077 HAX1O00165 279 aa14.98□□□□□ -0.01
RIF1-210ENST00000484077 PLCD3Q8N3E9 789 aa14.98□□□□□ -0.01
RIF1-210ENST00000484077 MNX1P50219 401 aaPredicted RBP14.97□□□□□ -0.01
RIF1-210ENST00000484077 ZBTB47Q9UFB7 747 aaPredicted RBP14.97□□□□□ -0.01
RIF1-210ENST00000484077 C19orf67A6NJJ6 358 aa14.95□□□□□ -0.02
RIF1-210ENST00000484077 VASPP50552 380 aaPredicted RBP14.92□□□□□ -0.02
RIF1-210ENST00000484077 NISCHQ9Y2I1 1504 aa14.89□□□□□ -0.03
RIF1-210ENST00000484077 CD44P16070 742 aaKnown RBP14.83□□□□□ -0.04
RIF1-210ENST00000484077 PAK3O75914 559 aaPredicted RBP14.79□□□□□ -0.04
RIF1-210ENST00000484077 SP7Q8TDD2 431 aaPredicted RBP14.79□□□□□ -0.04
RIF1-210ENST00000484077 EVX2Q03828 476 aa14.75□□□□□ -0.05
RIF1-210ENST00000484077 CLCN6P51797 869 aa14.74□□□□□ -0.05
RIF1-210ENST00000484077 KLHL34Q8N239 644 aa14.7□□□□□ -0.06
RIF1-210ENST00000484077 ZRANB1Q9UGI0 708 aa14.7□□□□□ -0.06
RIF1-210ENST00000484077 ZNF579Q8NAF0 562 aaKnown RBP14.68□□□□□ -0.06
RIF1-210ENST00000484077 NUBP1P53384 320 aa14.67□□□□□ -0.06
RIF1-210ENST00000484077 IFNLR1Q8IU57 520 aaPredicted RBP14.65□□□□□ -0.06
RIF1-210ENST00000484077 RASEFQ8IZ41 740 aa14.63□□□□□ -0.07
RIF1-210ENST00000484077 FAM212AQ96EL1 285 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms