RNA–Protein interactions for RNA: ENST00000483541.1

NSMCE4A-210, Transcript of NSE4 homolog A, SMC5-SMC6 complex component, humanhuman

TSL 3

Gene NSMCE4A, Length 694 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSMCE4A-210ENST00000483541 AEBP2Q6ZN18 517 aaPredicted RBP25.07■■□□□ 1.6
NSMCE4A-210ENST00000483541 CHIC1Q5VXU3 224 aa23.47■■□□□ 1.35
NSMCE4A-210ENST00000483541 SENP3Q9H4L4 574 aaPredicted RBP21.51■■□□□ 1.03
NSMCE4A-210ENST00000483541 PHF23Q9BUL5 403 aaPredicted RBP21.12■□□□□ 0.97
NSMCE4A-210ENST00000483541 FOXD1Q16676 465 aa20.05■□□□□ 0.8
NSMCE4A-210ENST00000483541 POTEDQ86YR6 584 aa19.24■□□□□ 0.67
NSMCE4A-210ENST00000483541 MSH5O43196 834 aa18.99■□□□□ 0.63
NSMCE4A-210ENST00000483541 PLPPR3Q6T4P5 718 aa18.71■□□□□ 0.59
NSMCE4A-210ENST00000483541 PIAS4Q8N2W9 510 aaPredicted RBP18.61■□□□□ 0.57
NSMCE4A-210ENST00000483541 PPP6R1Q9UPN7 881 aa18.39■□□□□ 0.53
NSMCE4A-210ENST00000483541 ADRA2BP18089 450 aa18.28■□□□□ 0.52
NSMCE4A-210ENST00000483541 DMRT2Q9Y5R5 561 aa16.99■□□□□ 0.31
NSMCE4A-210ENST00000483541 MAPK8IP2Q13387 824 aaPredicted RBP16.9■□□□□ 0.3
NSMCE4A-210ENST00000483541 SCAF1Q9H7N4 1312 aaKnown RBP16.8■□□□□ 0.28
NSMCE4A-210ENST00000483541 CACNB1Q02641 598 aaPredicted RBP16.49■□□□□ 0.23
NSMCE4A-210ENST00000483541 PPP4R3CPQ6ZMV5 832 aa16.42■□□□□ 0.22
NSMCE4A-210ENST00000483541 HOXD11P31277 338 aaPredicted RBP16.22■□□□□ 0.19
NSMCE4A-210ENST00000483541 DCAF8L1A6NGE4 600 aa16.17■□□□□ 0.18
NSMCE4A-210ENST00000483541 RNF39Q9H2S5 420 aa16.15■□□□□ 0.18
NSMCE4A-210ENST00000483541 CNKSR2Q8WXI2 1034 aa16.06■□□□□ 0.16
NSMCE4A-210ENST00000483541 RNF216Q9NWF9 866 aaPredicted RBP15.96■□□□□ 0.15
NSMCE4A-210ENST00000483541 NCBP3Q53F19 620 aaKnown RBP15.94■□□□□ 0.14
NSMCE4A-210ENST00000483541 C1QBPQ07021 282 aaKnown RBP15.91■□□□□ 0.14
NSMCE4A-210ENST00000483541 DNAJC5BQ9UF47 199 aa15.84■□□□□ 0.13
NSMCE4A-210ENST00000483541 NPM3O75607 178 aaKnown RBP15.64■□□□□ 0.09
NSMCE4A-210ENST00000483541 KCNA4P22459 653 aa15.61■□□□□ 0.09
NSMCE4A-210ENST00000483541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.35■□□□□ 0.053e-7■■■■□ 20.2
NSMCE4A-210ENST00000483541 U3KPZ7 1027 aaPredicted RBP15.02■□□□□ -0
NSMCE4A-210ENST00000483541 POTEHQ6S545 545 aa14.99□□□□□ -0.01
NSMCE4A-210ENST00000483541 DSG3P32926 999 aa14.96□□□□□ -0.01
NSMCE4A-210ENST00000483541 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
NSMCE4A-210ENST00000483541 CAPN15O75808 1086 aa14.88□□□□□ -0.03
NSMCE4A-210ENST00000483541 SLC4A2P04920 1241 aa14.85□□□□□ -0.03
NSMCE4A-210ENST00000483541 SLC4A1APQ9BWU0 796 aaKnown RBP14.83□□□□□ -0.04
NSMCE4A-210ENST00000483541 APLP2Q06481 763 aa14.61□□□□□ -0.07
NSMCE4A-210ENST00000483541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.58□□□□□ -0.08
NSMCE4A-210ENST00000483541 HNRNPUL2Q1KMD3 747 aaKnown RBP14.58□□□□□ -0.08
NSMCE4A-210ENST00000483541 ZNF219Q9P2Y4 722 aaPredicted RBP14.57□□□□□ -0.08
NSMCE4A-210ENST00000483541 TRHP20396 242 aaPredicted RBP14.51□□□□□ -0.09
NSMCE4A-210ENST00000483541 FOXD4L1Q9NU39 408 aa14.51□□□□□ -0.09
NSMCE4A-210ENST00000483541 SAMD1Q6SPF0 538 aaPredicted RBP14.49□□□□□ -0.09
NSMCE4A-210ENST00000483541 MYCNP04198 464 aaPredicted RBP14.48□□□□□ -0.09
NSMCE4A-210ENST00000483541 ABCB7O75027 752 aa14.46□□□□□ -0.09
NSMCE4A-210ENST00000483541 ZBTB22O15209 634 aa14.34□□□□□ -0.11
NSMCE4A-210ENST00000483541 RBM42Q9BTD8 480 aaKnown RBP14.32□□□□□ -0.12
NSMCE4A-210ENST00000483541 CHRDL2Q6WN34 429 aa14.14□□□□□ -0.15
NSMCE4A-210ENST00000483541 ATXN8OSP0DMR3 200 aa14.1□□□□□ -0.15
NSMCE4A-210ENST00000483541 POLA2Q14181 598 aa14.06□□□□□ -0.16
NSMCE4A-210ENST00000483541 ATF5Q9Y2D1 282 aaPredicted RBP14.06□□□□□ -0.16
NSMCE4A-210ENST00000483541 CSRNP3Q8WYN3 585 aa14.02□□□□□ -0.17
NSMCE4A-210ENST00000483541 EHMT2Q96KQ7 1210 aa13.95□□□□□ -0.18
NSMCE4A-210ENST00000483541 AKT1S1Q96B36 256 aa13.89□□□□□ -0.19
NSMCE4A-210ENST00000483541 SP7Q8TDD2 431 aaPredicted RBP13.86□□□□□ -0.19
NSMCE4A-210ENST00000483541 ZBTB12Q9Y330 459 aaPredicted RBP13.82□□□□□ -0.2
NSMCE4A-210ENST00000483541 REM2Q8IYK8 340 aaPredicted RBP13.72□□□□□ -0.21
NSMCE4A-210ENST00000483541 PIP4P2Q8N4L2 257 aa13.71□□□□□ -0.21
NSMCE4A-210ENST00000483541 OSCARQ8IYS5 282 aa13.62□□□□□ -0.23
NSMCE4A-210ENST00000483541 FXR2P51116 673 aaKnown RBP eCLIP13.59□□□□□ -0.23
NSMCE4A-210ENST00000483541 PITPNM1O00562 1244 aa13.57□□□□□ -0.24
NSMCE4A-210ENST00000483541 FBLN2P98095 1184 aa13.57□□□□□ -0.24
NSMCE4A-210ENST00000483541 HAX1O00165 279 aa13.52□□□□□ -0.25
NSMCE4A-210ENST00000483541 MKRN4PQ13434 485 aaPredicted RBP13.45□□□□□ -0.26
NSMCE4A-210ENST00000483541 SPDYE2BA6NHP3 402 aa13.38□□□□□ -0.27
NSMCE4A-210ENST00000483541 SPDYE6P0CI01 402 aa13.38□□□□□ -0.27
NSMCE4A-210ENST00000483541 SPDYE2Q495Y8 402 aa13.38□□□□□ -0.27
NSMCE4A-210ENST00000483541 EVX2Q03828 476 aa13.33□□□□□ -0.28
NSMCE4A-210ENST00000483541 ZNF692Q9BU19 519 aaPredicted RBP13.24□□□□□ -0.29
NSMCE4A-210ENST00000483541 SSUH2Q9Y2M2 353 aa13.21□□□□□ -0.29
NSMCE4A-210ENST00000483541 PRKAR2AP13861 404 aaKnown RBP13.2□□□□□ -0.3
NSMCE4A-210ENST00000483541 SPDYE1Q8NFV5 336 aaPredicted RBP13.2□□□□□ -0.3
NSMCE4A-210ENST00000483541 C19orf67A6NJJ6 358 aa13.17□□□□□ -0.3
NSMCE4A-210ENST00000483541 CLEC11AQ9Y240 323 aa13.11□□□□□ -0.31
NSMCE4A-210ENST00000483541 GABBR2O75899 941 aa13.04□□□□□ -0.32
NSMCE4A-210ENST00000483541 PABPN1Q86U42 306 aaKnown RBP eCLIP13.04□□□□□ -0.32
NSMCE4A-210ENST00000483541 SPDYE4A6NLX3 237 aa13.02□□□□□ -0.33
NSMCE4A-210ENST00000483541 LHX8Q68G74 356 aa12.97□□□□□ -0.33
NSMCE4A-210ENST00000483541 CHADLQ6NUI6 762 aa12.91□□□□□ -0.34
NSMCE4A-210ENST00000483541 PRR29P0C7W0 189 aa12.89□□□□□ -0.35
NSMCE4A-210ENST00000483541 STAG3Q9UJ98 1225 aa12.83□□□□□ -0.36
NSMCE4A-210ENST00000483541 CLCN6P51797 869 aa12.81□□□□□ -0.36
NSMCE4A-210ENST00000483541 PROM2Q8N271 834 aa12.79□□□□□ -0.36
NSMCE4A-210ENST00000483541 POTEIP0CG38 1075 aa12.76□□□□□ -0.37
NSMCE4A-210ENST00000483541 CD44P16070 742 aaKnown RBP12.76□□□□□ -0.37
NSMCE4A-210ENST00000483541 FARP1Q9Y4F1 1045 aaPredicted RBP12.74□□□□□ -0.37
NSMCE4A-210ENST00000483541 FKBP8Q14318 412 aa12.67□□□□□ -0.38
NSMCE4A-210ENST00000483541 ZNF579Q8NAF0 562 aaKnown RBP12.6□□□□□ -0.39
NSMCE4A-210ENST00000483541 DCBLD2Q96PD2 775 aa12.58□□□□□ -0.4
NSMCE4A-210ENST00000483541 CREBZFQ9NS37 354 aa12.57□□□□□ -0.4
NSMCE4A-210ENST00000483541 ZRANB1Q9UGI0 708 aa12.49□□□□□ -0.41
NSMCE4A-210ENST00000483541 GALR2O43603 387 aaPredicted RBP12.41□□□□□ -0.42
NSMCE4A-210ENST00000483541 MNX1P50219 401 aaPredicted RBP12.41□□□□□ -0.42
NSMCE4A-210ENST00000483541 PLSCR2Q9NRY7 297 aa12.41□□□□□ -0.42
NSMCE4A-210ENST00000483541 FBXO3Q9UK99 471 aa12.41□□□□□ -0.42
NSMCE4A-210ENST00000483541 NPM1P06748 294 aaKnown RBP eCLIP12.4□□□□□ -0.42
NSMCE4A-210ENST00000483541 PLEKHG5O94827 1062 aa12.39□□□□□ -0.43
NSMCE4A-210ENST00000483541 MIER1Q8N108 512 aa12.39□□□□□ -0.43
NSMCE4A-210ENST00000483541 OTUD5Q96G74 571 aa12.38□□□□□ -0.43
NSMCE4A-210ENST00000483541 POTEB2H3BUK9 544 aa12.32□□□□□ -0.44
NSMCE4A-210ENST00000483541 PAK3O75914 559 aaPredicted RBP12.32□□□□□ -0.44
NSMCE4A-210ENST00000483541 PLCD3Q8N3E9 789 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms