RNA–Protein interactions for RNA: ENST00000483442.5

LRCH3-217, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 4

Gene LRCH3, Length 562 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-217ENST00000483442 AEBP2Q6ZN18 517 aaPredicted RBP20.65■□□□□ 0.9
LRCH3-217ENST00000483442 CHIC1Q5VXU3 224 aa19.58■□□□□ 0.72
LRCH3-217ENST00000483442 SENP3Q9H4L4 574 aaPredicted RBP17.43■□□□□ 0.38
LRCH3-217ENST00000483442 PHF23Q9BUL5 403 aaPredicted RBP17.3■□□□□ 0.36
LRCH3-217ENST00000483442 FOXD1Q16676 465 aa16.36■□□□□ 0.21
LRCH3-217ENST00000483442 PLPPR3Q6T4P5 718 aa15.62■□□□□ 0.09
LRCH3-217ENST00000483442 PPP6R1Q9UPN7 881 aa15.42■□□□□ 0.06
LRCH3-217ENST00000483442 ADRA2BP18089 450 aa15.34■□□□□ 0.05
LRCH3-217ENST00000483442 PIAS4Q8N2W9 510 aaPredicted RBP15.23■□□□□ 0.03
LRCH3-217ENST00000483442 MSH5O43196 834 aa15.14■□□□□ 0.01
LRCH3-217ENST00000483442 POTEDQ86YR6 584 aa14.76□□□□□ -0.05
LRCH3-217ENST00000483442 MAPK8IP2Q13387 824 aaPredicted RBP14.11□□□□□ -0.15
LRCH3-217ENST00000483442 DMRT2Q9Y5R5 561 aa13.88□□□□□ -0.19
LRCH3-217ENST00000483442 SCAF1Q9H7N4 1312 aaKnown RBP13.84□□□□□ -0.19
LRCH3-217ENST00000483442 PPP4R3CPQ6ZMV5 832 aa13.76□□□□□ -0.21
LRCH3-217ENST00000483442 CNKSR2Q8WXI2 1034 aa13.44□□□□□ -0.26
LRCH3-217ENST00000483442 HOXD11P31277 338 aaPredicted RBP13.41□□□□□ -0.26
LRCH3-217ENST00000483442 RNF216Q9NWF9 866 aaPredicted RBP13.3□□□□□ -0.28
LRCH3-217ENST00000483442 DCAF8L1A6NGE4 600 aa13.29□□□□□ -0.28
LRCH3-217ENST00000483442 NCBP3Q53F19 620 aaKnown RBP13.14□□□□□ -0.31
LRCH3-217ENST00000483442 NPM3O75607 178 aaKnown RBP13.09□□□□□ -0.31
LRCH3-217ENST00000483442 RNF39Q9H2S5 420 aa13□□□□□ -0.33
LRCH3-217ENST00000483442 CACNB1Q02641 598 aaPredicted RBP12.99□□□□□ -0.33
LRCH3-217ENST00000483442 KCNA4P22459 653 aa12.94□□□□□ -0.34
LRCH3-217ENST00000483442 DNAJC5BQ9UF47 199 aa12.84□□□□□ -0.35
LRCH3-217ENST00000483442 C1QBPQ07021 282 aaKnown RBP12.75□□□□□ -0.37
LRCH3-217ENST00000483442 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.73□□□□□ -0.371e-7■■□□□ 14.2
LRCH3-217ENST00000483442 U3KPZ7 1027 aaPredicted RBP12.56□□□□□ -0.4
LRCH3-217ENST00000483442 SLC4A2P04920 1241 aa12.52□□□□□ -0.41
LRCH3-217ENST00000483442 SPINK5Q9NQ38 1064 aaPredicted RBP12.38□□□□□ -0.43
LRCH3-217ENST00000483442 CAPN15O75808 1086 aa12.27□□□□□ -0.45
LRCH3-217ENST00000483442 DSG3P32926 999 aa12.22□□□□□ -0.45
LRCH3-217ENST00000483442 SLC4A1APQ9BWU0 796 aaKnown RBP12.16□□□□□ -0.46
LRCH3-217ENST00000483442 TRHP20396 242 aaPredicted RBP12.11□□□□□ -0.47
LRCH3-217ENST00000483442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.05□□□□□ -0.48
LRCH3-217ENST00000483442 ABCB7O75027 752 aa12.05□□□□□ -0.48
LRCH3-217ENST00000483442 HNRNPUL2Q1KMD3 747 aaKnown RBP12.05□□□□□ -0.48
LRCH3-217ENST00000483442 MYCNP04198 464 aaPredicted RBP12.02□□□□□ -0.49
LRCH3-217ENST00000483442 SAMD1Q6SPF0 538 aaPredicted RBP12.02□□□□□ -0.49
LRCH3-217ENST00000483442 ZNF219Q9P2Y4 722 aaPredicted RBP12.01□□□□□ -0.49
LRCH3-217ENST00000483442 APLP2Q06481 763 aa12□□□□□ -0.49
LRCH3-217ENST00000483442 FOXD4L1Q9NU39 408 aa11.96□□□□□ -0.49
LRCH3-217ENST00000483442 ZBTB22O15209 634 aa11.95□□□□□ -0.5
LRCH3-217ENST00000483442 ATF5Q9Y2D1 282 aaPredicted RBP11.9□□□□□ -0.5
LRCH3-217ENST00000483442 POLA2Q14181 598 aa11.81□□□□□ -0.52
LRCH3-217ENST00000483442 POTEHQ6S545 545 aa11.55□□□□□ -0.56
LRCH3-217ENST00000483442 ATXN8OSP0DMR3 200 aa11.54□□□□□ -0.56
LRCH3-217ENST00000483442 RBM42Q9BTD8 480 aaKnown RBP11.52□□□□□ -0.57
LRCH3-217ENST00000483442 OSCARQ8IYS5 282 aa11.44□□□□□ -0.58
LRCH3-217ENST00000483442 CSRNP3Q8WYN3 585 aa11.44□□□□□ -0.58
LRCH3-217ENST00000483442 ZBTB12Q9Y330 459 aaPredicted RBP11.43□□□□□ -0.58
LRCH3-217ENST00000483442 MKRN4PQ13434 485 aaPredicted RBP11.33□□□□□ -0.6
LRCH3-217ENST00000483442 CHRDL2Q6WN34 429 aa11.33□□□□□ -0.6
LRCH3-217ENST00000483442 AKT1S1Q96B36 256 aa11.33□□□□□ -0.6
LRCH3-217ENST00000483442 EHMT2Q96KQ7 1210 aa11.31□□□□□ -0.6
LRCH3-217ENST00000483442 REM2Q8IYK8 340 aaPredicted RBP11.29□□□□□ -0.6
LRCH3-217ENST00000483442 FBLN2P98095 1184 aa11.23□□□□□ -0.61
LRCH3-217ENST00000483442 PITPNM1O00562 1244 aa11.18□□□□□ -0.62
LRCH3-217ENST00000483442 SPDYE2BA6NHP3 402 aa11.15□□□□□ -0.62
LRCH3-217ENST00000483442 SPDYE6P0CI01 402 aa11.15□□□□□ -0.62
LRCH3-217ENST00000483442 SPDYE2Q495Y8 402 aa11.15□□□□□ -0.62
LRCH3-217ENST00000483442 PIP4P2Q8N4L2 257 aa11.12□□□□□ -0.63
LRCH3-217ENST00000483442 ZNF692Q9BU19 519 aaPredicted RBP11.07□□□□□ -0.64
LRCH3-217ENST00000483442 SSUH2Q9Y2M2 353 aa11.07□□□□□ -0.64
LRCH3-217ENST00000483442 FXR2P51116 673 aaKnown RBP eCLIP11.05□□□□□ -0.64
LRCH3-217ENST00000483442 CLEC11AQ9Y240 323 aa10.97□□□□□ -0.65
LRCH3-217ENST00000483442 PABPN1Q86U42 306 aaKnown RBP eCLIP10.93□□□□□ -0.66
LRCH3-217ENST00000483442 SPDYE1Q8NFV5 336 aaPredicted RBP10.93□□□□□ -0.66
LRCH3-217ENST00000483442 PRKAR2AP13861 404 aaKnown RBP10.87□□□□□ -0.67
LRCH3-217ENST00000483442 EVX2Q03828 476 aa10.86□□□□□ -0.67
LRCH3-217ENST00000483442 HAX1O00165 279 aa10.85□□□□□ -0.67
LRCH3-217ENST00000483442 SP7Q8TDD2 431 aaPredicted RBP10.85□□□□□ -0.67
LRCH3-217ENST00000483442 CHADLQ6NUI6 762 aa10.83□□□□□ -0.68
LRCH3-217ENST00000483442 PRR29P0C7W0 189 aa10.77□□□□□ -0.69
LRCH3-217ENST00000483442 SPDYE4A6NLX3 237 aa10.74□□□□□ -0.69
LRCH3-217ENST00000483442 C19orf67A6NJJ6 358 aa10.69□□□□□ -0.7
LRCH3-217ENST00000483442 CREBZFQ9NS37 354 aa10.6□□□□□ -0.71
LRCH3-217ENST00000483442 FARP1Q9Y4F1 1045 aaPredicted RBP10.6□□□□□ -0.71
LRCH3-217ENST00000483442 GABBR2O75899 941 aa10.54□□□□□ -0.72
LRCH3-217ENST00000483442 STAG3Q9UJ98 1225 aa10.54□□□□□ -0.72
LRCH3-217ENST00000483442 PROM2Q8N271 834 aa10.53□□□□□ -0.72
LRCH3-217ENST00000483442 CD44P16070 742 aaKnown RBP10.51□□□□□ -0.73
LRCH3-217ENST00000483442 MNX1P50219 401 aaPredicted RBP10.45□□□□□ -0.74
LRCH3-217ENST00000483442 POTEIP0CG38 1075 aa10.38□□□□□ -0.75
LRCH3-217ENST00000483442 ZRANB1Q9UGI0 708 aa10.38□□□□□ -0.75
LRCH3-217ENST00000483442 ZNF579Q8NAF0 562 aaKnown RBP10.34□□□□□ -0.75
LRCH3-217ENST00000483442 FKBP8Q14318 412 aa10.31□□□□□ -0.76
LRCH3-217ENST00000483442 PHF12Q96QT6 1004 aa10.29□□□□□ -0.76
LRCH3-217ENST00000483442 GALR2O43603 387 aaPredicted RBP10.28□□□□□ -0.76
LRCH3-217ENST00000483442 NPM1P06748 294 aaKnown RBP eCLIP10.28□□□□□ -0.76
LRCH3-217ENST00000483442 CLCN6P51797 869 aa10.22□□□□□ -0.77
LRCH3-217ENST00000483442 MIER1Q8N108 512 aa10.22□□□□□ -0.77
LRCH3-217ENST00000483442 PAK3O75914 559 aaPredicted RBP10.2□□□□□ -0.78
LRCH3-217ENST00000483442 LHX8Q68G74 356 aa10.19□□□□□ -0.78
LRCH3-217ENST00000483442 DCBLD2Q96PD2 775 aa10.19□□□□□ -0.78
LRCH3-217ENST00000483442 TSPYL2Q9H2G4 693 aaPredicted RBP10.19□□□□□ -0.78
LRCH3-217ENST00000483442 RASEFQ8IZ41 740 aa10.16□□□□□ -0.78
LRCH3-217ENST00000483442 CCDC61Q9Y6R9 512 aa10.16□□□□□ -0.78
LRCH3-217ENST00000483442 MS4A3Q96HJ5 214 aa10.14□□□□□ -0.79
LRCH3-217ENST00000483442 PELP1Q8IZL8 1130 aaKnown RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms