RNA–Protein interactions for RNA: ENST00000481300.1

CBX3-207, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-207ENST00000481300 AEBP2Q6ZN18 517 aaPredicted RBP22.36■■□□□ 1.17
CBX3-207ENST00000481300 CHIC1Q5VXU3 224 aa21.38■■□□□ 1.01
CBX3-207ENST00000481300 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
CBX3-207ENST00000481300 PHF23Q9BUL5 403 aaPredicted RBP18.8■□□□□ 0.6
CBX3-207ENST00000481300 FOXD1Q16676 465 aa17.7■□□□□ 0.42
CBX3-207ENST00000481300 PLPPR3Q6T4P5 718 aa17.15■□□□□ 0.34
CBX3-207ENST00000481300 PPP6R1Q9UPN7 881 aa16.73■□□□□ 0.27
CBX3-207ENST00000481300 ADRA2BP18089 450 aa16.67■□□□□ 0.26
CBX3-207ENST00000481300 PIAS4Q8N2W9 510 aaPredicted RBP16.57■□□□□ 0.24
CBX3-207ENST00000481300 MSH5O43196 834 aa16.44■□□□□ 0.22
CBX3-207ENST00000481300 POTEDQ86YR6 584 aa15.76■□□□□ 0.11
CBX3-207ENST00000481300 MAPK8IP2Q13387 824 aaPredicted RBP15.26■□□□□ 0.03
CBX3-207ENST00000481300 SCAF1Q9H7N4 1312 aaKnown RBP15.17■□□□□ 0.02
CBX3-207ENST00000481300 DMRT2Q9Y5R5 561 aa15.1■□□□□ 0.01
CBX3-207ENST00000481300 PPP4R3CPQ6ZMV5 832 aa15.07■□□□□ 0
CBX3-207ENST00000481300 CNKSR2Q8WXI2 1034 aa14.73□□□□□ -0.05
CBX3-207ENST00000481300 HOXD11P31277 338 aaPredicted RBP14.62□□□□□ -0.07
CBX3-207ENST00000481300 RNF216Q9NWF9 866 aaPredicted RBP14.55□□□□□ -0.08
CBX3-207ENST00000481300 NCBP3Q53F19 620 aaKnown RBP14.51□□□□□ -0.09
CBX3-207ENST00000481300 DCAF8L1A6NGE4 600 aa14.44□□□□□ -0.1
CBX3-207ENST00000481300 NPM3O75607 178 aaKnown RBP14.36□□□□□ -0.11
CBX3-207ENST00000481300 KCNA4P22459 653 aa14.27□□□□□ -0.13
CBX3-207ENST00000481300 RNF39Q9H2S5 420 aa14.08□□□□□ -0.16
CBX3-207ENST00000481300 DNAJC5BQ9UF47 199 aa14.06□□□□□ -0.16
CBX3-207ENST00000481300 CACNB1Q02641 598 aaPredicted RBP13.99□□□□□ -0.17
CBX3-207ENST00000481300 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.9□□□□□ -0.185e-18■■■■□ 22.7
CBX3-207ENST00000481300 C1QBPQ07021 282 aaKnown RBP13.86□□□□□ -0.19
CBX3-207ENST00000481300 SLC4A2P04920 1241 aa13.68□□□□□ -0.22
CBX3-207ENST00000481300 U3KPZ7 1027 aaPredicted RBP13.68□□□□□ -0.22
CBX3-207ENST00000481300 SLC4A1APQ9BWU0 796 aaKnown RBP13.48□□□□□ -0.25
CBX3-207ENST00000481300 SPINK5Q9NQ38 1064 aaPredicted RBP13.43□□□□□ -0.26
CBX3-207ENST00000481300 CAPN15O75808 1086 aa13.35□□□□□ -0.27
CBX3-207ENST00000481300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.28□□□□□ -0.28
CBX3-207ENST00000481300 HNRNPUL2Q1KMD3 747 aaKnown RBP13.28□□□□□ -0.28
CBX3-207ENST00000481300 MYCNP04198 464 aaPredicted RBP13.25□□□□□ -0.29
CBX3-207ENST00000481300 DSG3P32926 999 aa13.25□□□□□ -0.29
CBX3-207ENST00000481300 SAMD1Q6SPF0 538 aaPredicted RBP13.23□□□□□ -0.29
CBX3-207ENST00000481300 APLP2Q06481 763 aa13.22□□□□□ -0.29
CBX3-207ENST00000481300 FOXD4L1Q9NU39 408 aa13.22□□□□□ -0.29
CBX3-207ENST00000481300 TRHP20396 242 aaPredicted RBP13.19□□□□□ -0.3
CBX3-207ENST00000481300 ZBTB22O15209 634 aa13.16□□□□□ -0.3
CBX3-207ENST00000481300 ZNF219Q9P2Y4 722 aaPredicted RBP13.16□□□□□ -0.3
CBX3-207ENST00000481300 ABCB7O75027 752 aa13.09□□□□□ -0.31
CBX3-207ENST00000481300 ATF5Q9Y2D1 282 aaPredicted RBP12.99□□□□□ -0.33
CBX3-207ENST00000481300 POLA2Q14181 598 aa12.89□□□□□ -0.35
CBX3-207ENST00000481300 ATXN8OSP0DMR3 200 aa12.79□□□□□ -0.36
CBX3-207ENST00000481300 CSRNP3Q8WYN3 585 aa12.7□□□□□ -0.38
CBX3-207ENST00000481300 EHMT2Q96KQ7 1210 aa12.62□□□□□ -0.39
CBX3-207ENST00000481300 ZBTB12Q9Y330 459 aaPredicted RBP12.6□□□□□ -0.39
CBX3-207ENST00000481300 RBM42Q9BTD8 480 aaKnown RBP12.59□□□□□ -0.39
CBX3-207ENST00000481300 OSCARQ8IYS5 282 aa12.49□□□□□ -0.41
CBX3-207ENST00000481300 FBLN2P98095 1184 aa12.39□□□□□ -0.43
CBX3-207ENST00000481300 MKRN4PQ13434 485 aaPredicted RBP12.39□□□□□ -0.43
CBX3-207ENST00000481300 POTEHQ6S545 545 aa12.37□□□□□ -0.43
CBX3-207ENST00000481300 AKT1S1Q96B36 256 aa12.37□□□□□ -0.43
CBX3-207ENST00000481300 CHRDL2Q6WN34 429 aa12.27□□□□□ -0.45
CBX3-207ENST00000481300 REM2Q8IYK8 340 aaPredicted RBP12.27□□□□□ -0.45
CBX3-207ENST00000481300 SPDYE2BA6NHP3 402 aa12.26□□□□□ -0.45
CBX3-207ENST00000481300 SPDYE6P0CI01 402 aa12.26□□□□□ -0.45
CBX3-207ENST00000481300 SPDYE2Q495Y8 402 aa12.26□□□□□ -0.45
CBX3-207ENST00000481300 PITPNM1O00562 1244 aa12.15□□□□□ -0.46
CBX3-207ENST00000481300 ZNF692Q9BU19 519 aaPredicted RBP12.14□□□□□ -0.47
CBX3-207ENST00000481300 SSUH2Q9Y2M2 353 aa12.14□□□□□ -0.47
CBX3-207ENST00000481300 PIP4P2Q8N4L2 257 aa12.04□□□□□ -0.48
CBX3-207ENST00000481300 FXR2P51116 673 aaKnown RBP eCLIP12□□□□□ -0.494e-11■□□□□ 8.2
CBX3-207ENST00000481300 SPDYE1Q8NFV5 336 aaPredicted RBP11.99□□□□□ -0.49
CBX3-207ENST00000481300 PABPN1Q86U42 306 aaKnown RBP eCLIP11.98□□□□□ -0.49
CBX3-207ENST00000481300 CLEC11AQ9Y240 323 aa11.96□□□□□ -0.49
CBX3-207ENST00000481300 SPDYE4A6NLX3 237 aa11.86□□□□□ -0.51
CBX3-207ENST00000481300 PRKAR2AP13861 404 aaKnown RBP11.81□□□□□ -0.52
CBX3-207ENST00000481300 PRR29P0C7W0 189 aa11.78□□□□□ -0.52
CBX3-207ENST00000481300 CHADLQ6NUI6 762 aa11.75□□□□□ -0.53
CBX3-207ENST00000481300 HAX1O00165 279 aa11.73□□□□□ -0.53
CBX3-207ENST00000481300 SP7Q8TDD2 431 aaPredicted RBP11.69□□□□□ -0.54
CBX3-207ENST00000481300 EVX2Q03828 476 aa11.67□□□□□ -0.54
CBX3-207ENST00000481300 STAG3Q9UJ98 1225 aa11.66□□□□□ -0.54
CBX3-207ENST00000481300 PROM2Q8N271 834 aa11.64□□□□□ -0.55
CBX3-207ENST00000481300 C19orf67A6NJJ6 358 aa11.61□□□□□ -0.55
CBX3-207ENST00000481300 CREBZFQ9NS37 354 aa11.58□□□□□ -0.56
CBX3-207ENST00000481300 FARP1Q9Y4F1 1045 aaPredicted RBP11.57□□□□□ -0.56
CBX3-207ENST00000481300 FKBP8Q14318 412 aa11.48□□□□□ -0.57
CBX3-207ENST00000481300 CD44P16070 742 aaKnown RBP11.45□□□□□ -0.58
CBX3-207ENST00000481300 MNX1P50219 401 aaPredicted RBP11.42□□□□□ -0.58
CBX3-207ENST00000481300 GABBR2O75899 941 aa11.38□□□□□ -0.59
CBX3-207ENST00000481300 NPM1P06748 294 aaKnown RBP eCLIP11.32□□□□□ -0.6
CBX3-207ENST00000481300 ZRANB1Q9UGI0 708 aa11.31□□□□□ -0.6
CBX3-207ENST00000481300 ZNF579Q8NAF0 562 aaKnown RBP11.29□□□□□ -0.6
CBX3-207ENST00000481300 MIER1Q8N108 512 aa11.28□□□□□ -0.6
CBX3-207ENST00000481300 PAK3O75914 559 aaPredicted RBP11.22□□□□□ -0.61
CBX3-207ENST00000481300 CLCN6P51797 869 aa11.21□□□□□ -0.61
CBX3-207ENST00000481300 PLCD3Q8N3E9 789 aa11.21□□□□□ -0.61
CBX3-207ENST00000481300 PHF12Q96QT6 1004 aa11.21□□□□□ -0.61
CBX3-207ENST00000481300 PLEKHG5O94827 1062 aa11.2□□□□□ -0.62
CBX3-207ENST00000481300 POTEIP0CG38 1075 aa11.17□□□□□ -0.62
CBX3-207ENST00000481300 GALR2O43603 387 aaPredicted RBP11.16□□□□□ -0.62
CBX3-207ENST00000481300 TSPYL2Q9H2G4 693 aaPredicted RBP11.15□□□□□ -0.62
CBX3-207ENST00000481300 FBXO3Q9UK99 471 aa11.14□□□□□ -0.63
CBX3-207ENST00000481300 RASEFQ8IZ41 740 aa11.13□□□□□ -0.63
CBX3-207ENST00000481300 CCDC61Q9Y6R9 512 aa11.11□□□□□ -0.63
CBX3-207ENST00000481300 DCBLD2Q96PD2 775 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms