RNA–Protein interactions for RNA: ENST00000481154.1

PTPN12-211, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 3

Gene PTPN12, Length 630 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-211ENST00000481154 AEBP2Q6ZN18 517 aaPredicted RBP30.8■■■□□ 2.52
PTPN12-211ENST00000481154 CHIC1Q5VXU3 224 aa29.02■■■□□ 2.24
PTPN12-211ENST00000481154 SENP3Q9H4L4 574 aaPredicted RBP26.14■■□□□ 1.78
PTPN12-211ENST00000481154 PHF23Q9BUL5 403 aaPredicted RBP25.84■■□□□ 1.73
PTPN12-211ENST00000481154 FOXD1Q16676 465 aa24.48■■□□□ 1.51
PTPN12-211ENST00000481154 PLPPR3Q6T4P5 718 aa23.16■■□□□ 1.3
PTPN12-211ENST00000481154 MSH5O43196 834 aa22.84■■□□□ 1.25
PTPN12-211ENST00000481154 PPP6R1Q9UPN7 881 aa22.83■■□□□ 1.25
PTPN12-211ENST00000481154 PIAS4Q8N2W9 510 aaPredicted RBP22.78■■□□□ 1.24
PTPN12-211ENST00000481154 ADRA2BP18089 450 aa22.72■■□□□ 1.23
PTPN12-211ENST00000481154 POTEDQ86YR6 584 aa22.64■■□□□ 1.21
PTPN12-211ENST00000481154 MAPK8IP2Q13387 824 aaPredicted RBP20.93■□□□□ 0.94
PTPN12-211ENST00000481154 DMRT2Q9Y5R5 561 aa20.76■□□□□ 0.91
PTPN12-211ENST00000481154 SCAF1Q9H7N4 1312 aaKnown RBP20.6■□□□□ 0.89
PTPN12-211ENST00000481154 PPP4R3CPQ6ZMV5 832 aa20.4■□□□□ 0.86
PTPN12-211ENST00000481154 HOXD11P31277 338 aaPredicted RBP19.94■□□□□ 0.78
PTPN12-211ENST00000481154 CNKSR2Q8WXI2 1034 aa19.86■□□□□ 0.77
PTPN12-211ENST00000481154 DCAF8L1A6NGE4 600 aa19.85■□□□□ 0.77
PTPN12-211ENST00000481154 RNF216Q9NWF9 866 aaPredicted RBP19.72■□□□□ 0.75
PTPN12-211ENST00000481154 CACNB1Q02641 598 aaPredicted RBP19.71■□□□□ 0.75
PTPN12-211ENST00000481154 NCBP3Q53F19 620 aaKnown RBP19.7■□□□□ 0.74
PTPN12-211ENST00000481154 KCNA4P22459 653 aa19.56■□□□□ 0.72
PTPN12-211ENST00000481154 RNF39Q9H2S5 420 aa19.56■□□□□ 0.72
PTPN12-211ENST00000481154 NPM3O75607 178 aaKnown RBP19.48■□□□□ 0.71
PTPN12-211ENST00000481154 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
PTPN12-211ENST00000481154 C1QBPQ07021 282 aaKnown RBP19.19■□□□□ 0.66
PTPN12-211ENST00000481154 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.93■□□□□ 0.621e-6■□□□□ 10.5
PTPN12-211ENST00000481154 U3KPZ7 1027 aaPredicted RBP18.62■□□□□ 0.57
PTPN12-211ENST00000481154 SLC4A1APQ9BWU0 796 aaKnown RBP18.53■□□□□ 0.56
PTPN12-211ENST00000481154 SLC4A2P04920 1241 aa18.49■□□□□ 0.55
PTPN12-211ENST00000481154 SPINK5Q9NQ38 1064 aaPredicted RBP18.41■□□□□ 0.54
PTPN12-211ENST00000481154 CAPN15O75808 1086 aa18.28■□□□□ 0.52
PTPN12-211ENST00000481154 DSG3P32926 999 aa18.28■□□□□ 0.52
PTPN12-211ENST00000481154 FOXD4L1Q9NU39 408 aa18.05■□□□□ 0.48
PTPN12-211ENST00000481154 ZBTB22O15209 634 aa18.01■□□□□ 0.47
PTPN12-211ENST00000481154 TRHP20396 242 aaPredicted RBP17.98■□□□□ 0.47
PTPN12-211ENST00000481154 MYCNP04198 464 aaPredicted RBP17.97■□□□□ 0.47
PTPN12-211ENST00000481154 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.92■□□□□ 0.46
PTPN12-211ENST00000481154 HNRNPUL2Q1KMD3 747 aaKnown RBP17.92■□□□□ 0.46
PTPN12-211ENST00000481154 ABCB7O75027 752 aa17.91■□□□□ 0.46
PTPN12-211ENST00000481154 APLP2Q06481 763 aa17.88■□□□□ 0.45
PTPN12-211ENST00000481154 ZNF219Q9P2Y4 722 aaPredicted RBP17.88■□□□□ 0.45
PTPN12-211ENST00000481154 SAMD1Q6SPF0 538 aaPredicted RBP17.87■□□□□ 0.45
PTPN12-211ENST00000481154 POTEHQ6S545 545 aa17.68■□□□□ 0.42
PTPN12-211ENST00000481154 EHMT2Q96KQ7 1210 aa17.68■□□□□ 0.42
PTPN12-211ENST00000481154 ATF5Q9Y2D1 282 aaPredicted RBP17.61■□□□□ 0.41
PTPN12-211ENST00000481154 CSRNP3Q8WYN3 585 aa17.58■□□□□ 0.4
PTPN12-211ENST00000481154 POLA2Q14181 598 aa17.47■□□□□ 0.39
PTPN12-211ENST00000481154 ATXN8OSP0DMR3 200 aa17.38■□□□□ 0.37
PTPN12-211ENST00000481154 RBM42Q9BTD8 480 aaKnown RBP17.32■□□□□ 0.36
PTPN12-211ENST00000481154 CHRDL2Q6WN34 429 aa17.08■□□□□ 0.32
PTPN12-211ENST00000481154 ZBTB12Q9Y330 459 aaPredicted RBP17■□□□□ 0.31
PTPN12-211ENST00000481154 OSCARQ8IYS5 282 aa16.95■□□□□ 0.3
PTPN12-211ENST00000481154 AKT1S1Q96B36 256 aa16.94■□□□□ 0.3
PTPN12-211ENST00000481154 REM2Q8IYK8 340 aaPredicted RBP16.83■□□□□ 0.28
PTPN12-211ENST00000481154 FBLN2P98095 1184 aa16.81■□□□□ 0.28
PTPN12-211ENST00000481154 MKRN4PQ13434 485 aaPredicted RBP16.79■□□□□ 0.28
PTPN12-211ENST00000481154 PIP4P2Q8N4L2 257 aa16.69■□□□□ 0.26
PTPN12-211ENST00000481154 PITPNM1O00562 1244 aa16.67■□□□□ 0.26
PTPN12-211ENST00000481154 FXR2P51116 673 aaKnown RBP eCLIP16.55■□□□□ 0.24
PTPN12-211ENST00000481154 SPDYE2BA6NHP3 402 aa16.53■□□□□ 0.24
PTPN12-211ENST00000481154 SPDYE6P0CI01 402 aa16.53■□□□□ 0.24
PTPN12-211ENST00000481154 SPDYE2Q495Y8 402 aa16.53■□□□□ 0.24
PTPN12-211ENST00000481154 SP7Q8TDD2 431 aaPredicted RBP16.5■□□□□ 0.23
PTPN12-211ENST00000481154 ZNF692Q9BU19 519 aaPredicted RBP16.44■□□□□ 0.22
PTPN12-211ENST00000481154 SSUH2Q9Y2M2 353 aa16.36■□□□□ 0.21
PTPN12-211ENST00000481154 HAX1O00165 279 aa16.35■□□□□ 0.21
PTPN12-211ENST00000481154 EVX2Q03828 476 aa16.28■□□□□ 0.2
PTPN12-211ENST00000481154 SPDYE1Q8NFV5 336 aaPredicted RBP16.26■□□□□ 0.19
PTPN12-211ENST00000481154 CLEC11AQ9Y240 323 aa16.26■□□□□ 0.19
PTPN12-211ENST00000481154 PABPN1Q86U42 306 aaKnown RBP eCLIP16.23■□□□□ 0.19
PTPN12-211ENST00000481154 SPDYE4A6NLX3 237 aa16.22■□□□□ 0.19
PTPN12-211ENST00000481154 PRKAR2AP13861 404 aaKnown RBP16.21■□□□□ 0.19
PTPN12-211ENST00000481154 CHADLQ6NUI6 762 aa16.05■□□□□ 0.16
PTPN12-211ENST00000481154 C19orf67A6NJJ6 358 aa16.02■□□□□ 0.16
PTPN12-211ENST00000481154 PRR29P0C7W0 189 aa15.95■□□□□ 0.14
PTPN12-211ENST00000481154 FKBP8Q14318 412 aa15.94■□□□□ 0.14
PTPN12-211ENST00000481154 PROM2Q8N271 834 aa15.85■□□□□ 0.13
PTPN12-211ENST00000481154 GABBR2O75899 941 aa15.82■□□□□ 0.12
PTPN12-211ENST00000481154 STAG3Q9UJ98 1225 aa15.79■□□□□ 0.12
PTPN12-211ENST00000481154 FARP1Q9Y4F1 1045 aaPredicted RBP15.74■□□□□ 0.11
PTPN12-211ENST00000481154 CD44P16070 742 aaKnown RBP15.67■□□□□ 0.1
PTPN12-211ENST00000481154 CREBZFQ9NS37 354 aa15.63■□□□□ 0.09
PTPN12-211ENST00000481154 POTEIP0CG38 1075 aa15.56■□□□□ 0.08
PTPN12-211ENST00000481154 LHX8Q68G74 356 aa15.47■□□□□ 0.07
PTPN12-211ENST00000481154 ZNF579Q8NAF0 562 aaKnown RBP15.44■□□□□ 0.06
PTPN12-211ENST00000481154 ZRANB1Q9UGI0 708 aa15.43■□□□□ 0.06
PTPN12-211ENST00000481154 MNX1P50219 401 aaPredicted RBP15.42■□□□□ 0.06
PTPN12-211ENST00000481154 MIER1Q8N108 512 aa15.42■□□□□ 0.06
PTPN12-211ENST00000481154 CLCN6P51797 869 aa15.37■□□□□ 0.05
PTPN12-211ENST00000481154 PLCD3Q8N3E9 789 aa15.36■□□□□ 0.05
PTPN12-211ENST00000481154 FBXO3Q9UK99 471 aa15.36■□□□□ 0.05
PTPN12-211ENST00000481154 PLEKHG5O94827 1062 aa15.31■□□□□ 0.04
PTPN12-211ENST00000481154 GALR2O43603 387 aaPredicted RBP15.3■□□□□ 0.04
PTPN12-211ENST00000481154 NPM1P06748 294 aaKnown RBP eCLIP15.3■□□□□ 0.04
PTPN12-211ENST00000481154 DCBLD2Q96PD2 775 aa15.28■□□□□ 0.04
PTPN12-211ENST00000481154 PHF12Q96QT6 1004 aa15.26■□□□□ 0.03
PTPN12-211ENST00000481154 VASPP50552 380 aaPredicted RBP15.23■□□□□ 0.03
PTPN12-211ENST00000481154 PAK3O75914 559 aaPredicted RBP15.17■□□□□ 0.02
PTPN12-211ENST00000481154 TSPYL2Q9H2G4 693 aaPredicted RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms