RNA–Protein interactions for RNA: ENST00000478776.1

VLDLR-204, Transcript of very low density lipoprotein receptor, humanhuman

TSL 3

Gene VLDLR, Length 510 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VLDLR-204ENST00000478776 AEBP2Q6ZN18 517 aaPredicted RBP23.94■■□□□ 1.42
VLDLR-204ENST00000478776 CHIC1Q5VXU3 224 aa22.84■■□□□ 1.25
VLDLR-204ENST00000478776 SENP3Q9H4L4 574 aaPredicted RBP20.53■□□□□ 0.88
VLDLR-204ENST00000478776 PHF23Q9BUL5 403 aaPredicted RBP20.25■□□□□ 0.83
VLDLR-204ENST00000478776 FOXD1Q16676 465 aa19.07■□□□□ 0.64
VLDLR-204ENST00000478776 PLPPR3Q6T4P5 718 aa18.33■□□□□ 0.52
VLDLR-204ENST00000478776 MSH5O43196 834 aa17.9■□□□□ 0.46
VLDLR-204ENST00000478776 PIAS4Q8N2W9 510 aaPredicted RBP17.9■□□□□ 0.46
VLDLR-204ENST00000478776 ADRA2BP18089 450 aa17.84■□□□□ 0.45
VLDLR-204ENST00000478776 PPP6R1Q9UPN7 881 aa17.83■□□□□ 0.44
VLDLR-204ENST00000478776 POTEDQ86YR6 584 aa17.33■□□□□ 0.36
VLDLR-204ENST00000478776 SCAF1Q9H7N4 1312 aaKnown RBP16.44■□□□□ 0.22
VLDLR-204ENST00000478776 MAPK8IP2Q13387 824 aaPredicted RBP16.35■□□□□ 0.21
VLDLR-204ENST00000478776 DMRT2Q9Y5R5 561 aa16.25■□□□□ 0.19
VLDLR-204ENST00000478776 PPP4R3CPQ6ZMV5 832 aa16.06■□□□□ 0.16
VLDLR-204ENST00000478776 CNKSR2Q8WXI2 1034 aa15.76■□□□□ 0.11
VLDLR-204ENST00000478776 DCAF8L1A6NGE4 600 aa15.71■□□□□ 0.11
VLDLR-204ENST00000478776 HOXD11P31277 338 aaPredicted RBP15.65■□□□□ 0.1
VLDLR-204ENST00000478776 RNF216Q9NWF9 866 aaPredicted RBP15.59■□□□□ 0.09
VLDLR-204ENST00000478776 NCBP3Q53F19 620 aaKnown RBP15.54■□□□□ 0.08
VLDLR-204ENST00000478776 CACNB1Q02641 598 aaPredicted RBP15.37■□□□□ 0.05
VLDLR-204ENST00000478776 RNF39Q9H2S5 420 aa15.22■□□□□ 0.03
VLDLR-204ENST00000478776 NPM3O75607 178 aaKnown RBP15.2■□□□□ 0.02
VLDLR-204ENST00000478776 DNAJC5BQ9UF47 199 aa15.11■□□□□ 0.01
VLDLR-204ENST00000478776 C1QBPQ07021 282 aaKnown RBP15.05■□□□□ -0
VLDLR-204ENST00000478776 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.03■□□□□ -0
VLDLR-204ENST00000478776 KCNA4P22459 653 aa14.95□□□□□ -0.02
VLDLR-204ENST00000478776 U3KPZ7 1027 aaPredicted RBP14.61□□□□□ -0.07
VLDLR-204ENST00000478776 CAPN15O75808 1086 aa14.47□□□□□ -0.09
VLDLR-204ENST00000478776 SLC4A2P04920 1241 aa14.47□□□□□ -0.09
VLDLR-204ENST00000478776 SPINK5Q9NQ38 1064 aaPredicted RBP14.4□□□□□ -0.1
VLDLR-204ENST00000478776 APLP2Q06481 763 aa14.37□□□□□ -0.11
VLDLR-204ENST00000478776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.33□□□□□ -0.12
VLDLR-204ENST00000478776 HNRNPUL2Q1KMD3 747 aaKnown RBP14.33□□□□□ -0.12
VLDLR-204ENST00000478776 DSG3P32926 999 aa14.28□□□□□ -0.12
VLDLR-204ENST00000478776 TRHP20396 242 aaPredicted RBP14.24□□□□□ -0.13
VLDLR-204ENST00000478776 SAMD1Q6SPF0 538 aaPredicted RBP14.22□□□□□ -0.13
VLDLR-204ENST00000478776 ZNF219Q9P2Y4 722 aaPredicted RBP14.2□□□□□ -0.14
VLDLR-204ENST00000478776 SLC4A1APQ9BWU0 796 aaKnown RBP14.19□□□□□ -0.14
VLDLR-204ENST00000478776 MYCNP04198 464 aaPredicted RBP14.11□□□□□ -0.15
VLDLR-204ENST00000478776 ABCB7O75027 752 aa14.09□□□□□ -0.15
VLDLR-204ENST00000478776 FOXD4L1Q9NU39 408 aa13.97□□□□□ -0.17
VLDLR-204ENST00000478776 POLA2Q14181 598 aa13.84□□□□□ -0.19
VLDLR-204ENST00000478776 RBM42Q9BTD8 480 aaKnown RBP13.71□□□□□ -0.21
VLDLR-204ENST00000478776 ATF5Q9Y2D1 282 aaPredicted RBP13.69□□□□□ -0.22
VLDLR-204ENST00000478776 ZBTB22O15209 634 aa13.68□□□□□ -0.22
VLDLR-204ENST00000478776 POTEHQ6S545 545 aa13.62□□□□□ -0.23
VLDLR-204ENST00000478776 ZBTB12Q9Y330 459 aaPredicted RBP13.6□□□□□ -0.23
VLDLR-204ENST00000478776 ATXN8OSP0DMR3 200 aa13.55□□□□□ -0.24
VLDLR-204ENST00000478776 AKT1S1Q96B36 256 aa13.37□□□□□ -0.27
VLDLR-204ENST00000478776 OSCARQ8IYS5 282 aa13.36□□□□□ -0.27
VLDLR-204ENST00000478776 CHRDL2Q6WN34 429 aa13.34□□□□□ -0.27
VLDLR-204ENST00000478776 FBLN2P98095 1184 aa13.32□□□□□ -0.28
VLDLR-204ENST00000478776 REM2Q8IYK8 340 aaPredicted RBP13.23□□□□□ -0.29
VLDLR-204ENST00000478776 SPDYE2BA6NHP3 402 aa13.15□□□□□ -0.3
VLDLR-204ENST00000478776 SPDYE6P0CI01 402 aa13.15□□□□□ -0.3
VLDLR-204ENST00000478776 SPDYE2Q495Y8 402 aa13.15□□□□□ -0.3
VLDLR-204ENST00000478776 CSRNP3Q8WYN3 585 aa13.14□□□□□ -0.31
VLDLR-204ENST00000478776 EHMT2Q96KQ7 1210 aa13.08□□□□□ -0.32
VLDLR-204ENST00000478776 PITPNM1O00562 1244 aa13.07□□□□□ -0.32
VLDLR-204ENST00000478776 MKRN4PQ13434 485 aaPredicted RBP13.06□□□□□ -0.32
VLDLR-204ENST00000478776 ZNF692Q9BU19 519 aaPredicted RBP13.03□□□□□ -0.32
VLDLR-204ENST00000478776 PIP4P2Q8N4L2 257 aa13.01□□□□□ -0.33
VLDLR-204ENST00000478776 SPDYE1Q8NFV5 336 aaPredicted RBP12.94□□□□□ -0.34
VLDLR-204ENST00000478776 CLEC11AQ9Y240 323 aa12.94□□□□□ -0.34
VLDLR-204ENST00000478776 FXR2P51116 673 aaKnown RBP eCLIP12.93□□□□□ -0.34
VLDLR-204ENST00000478776 SSUH2Q9Y2M2 353 aa12.91□□□□□ -0.34
VLDLR-204ENST00000478776 HAX1O00165 279 aa12.85□□□□□ -0.35
VLDLR-204ENST00000478776 PABPN1Q86U42 306 aaKnown RBP eCLIP12.82□□□□□ -0.36
VLDLR-204ENST00000478776 SP7Q8TDD2 431 aaPredicted RBP12.79□□□□□ -0.36
VLDLR-204ENST00000478776 PRKAR2AP13861 404 aaKnown RBP12.77□□□□□ -0.37
VLDLR-204ENST00000478776 PRR29P0C7W0 189 aa12.72□□□□□ -0.37
VLDLR-204ENST00000478776 CHADLQ6NUI6 762 aa12.61□□□□□ -0.39
VLDLR-204ENST00000478776 SPDYE4A6NLX3 237 aa12.57□□□□□ -0.4
VLDLR-204ENST00000478776 EVX2Q03828 476 aa12.56□□□□□ -0.4
VLDLR-204ENST00000478776 C19orf67A6NJJ6 358 aa12.52□□□□□ -0.41
VLDLR-204ENST00000478776 STAG3Q9UJ98 1225 aa12.52□□□□□ -0.41
VLDLR-204ENST00000478776 FARP1Q9Y4F1 1045 aaPredicted RBP12.44□□□□□ -0.42
VLDLR-204ENST00000478776 CD44P16070 742 aaKnown RBP12.37□□□□□ -0.43
VLDLR-204ENST00000478776 GABBR2O75899 941 aa12.34□□□□□ -0.43
VLDLR-204ENST00000478776 CREBZFQ9NS37 354 aa12.32□□□□□ -0.44
VLDLR-204ENST00000478776 CLCN6P51797 869 aa12.23□□□□□ -0.45
VLDLR-204ENST00000478776 NPM1P06748 294 aaKnown RBP eCLIP12.22□□□□□ -0.45
VLDLR-204ENST00000478776 ZRANB1Q9UGI0 708 aa12.22□□□□□ -0.45
VLDLR-204ENST00000478776 PAK3O75914 559 aaPredicted RBP12.2□□□□□ -0.46
VLDLR-204ENST00000478776 PROM2Q8N271 834 aa12.16□□□□□ -0.46
VLDLR-204ENST00000478776 ZNF579Q8NAF0 562 aaKnown RBP12.14□□□□□ -0.47
VLDLR-204ENST00000478776 DCBLD2Q96PD2 775 aa12.11□□□□□ -0.47
VLDLR-204ENST00000478776 PLEKHG5O94827 1062 aa12.1□□□□□ -0.47
VLDLR-204ENST00000478776 MNX1P50219 401 aaPredicted RBP12.07□□□□□ -0.48
VLDLR-204ENST00000478776 MIER1Q8N108 512 aa12.05□□□□□ -0.48
VLDLR-204ENST00000478776 LHX8Q68G74 356 aa12.02□□□□□ -0.49
VLDLR-204ENST00000478776 POTEIP0CG38 1075 aa12.01□□□□□ -0.49
VLDLR-204ENST00000478776 PHF12Q96QT6 1004 aa12.01□□□□□ -0.49
VLDLR-204ENST00000478776 GALR2O43603 387 aaPredicted RBP11.99□□□□□ -0.49
VLDLR-204ENST00000478776 FKBP8Q14318 412 aa11.99□□□□□ -0.49
VLDLR-204ENST00000478776 PLCD3Q8N3E9 789 aa11.96□□□□□ -0.49
VLDLR-204ENST00000478776 TSPYL2Q9H2G4 693 aaPredicted RBP11.96□□□□□ -0.49
VLDLR-204ENST00000478776 ZBTB47Q9UFB7 747 aaPredicted RBP11.88□□□□□ -0.51
VLDLR-204ENST00000478776 MS4A3Q96HJ5 214 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms