RNA–Protein interactions for RNA: ENST00000478525.1

HPS3-205, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 3

Gene HPS3, Length 601 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-205ENST00000478525 AEBP2Q6ZN18 517 aaPredicted RBP26.1■■□□□ 1.77
HPS3-205ENST00000478525 CHIC1Q5VXU3 224 aa24.77■■□□□ 1.56
HPS3-205ENST00000478525 SENP3Q9H4L4 574 aaPredicted RBP22.21■■□□□ 1.15
HPS3-205ENST00000478525 PHF23Q9BUL5 403 aaPredicted RBP21.93■■□□□ 1.1
HPS3-205ENST00000478525 FOXD1Q16676 465 aa20.72■□□□□ 0.91
HPS3-205ENST00000478525 PLPPR3Q6T4P5 718 aa19.77■□□□□ 0.76
HPS3-205ENST00000478525 POTEDQ86YR6 584 aa19.55■□□□□ 0.72
HPS3-205ENST00000478525 PPP6R1Q9UPN7 881 aa19.4■□□□□ 0.7
HPS3-205ENST00000478525 PIAS4Q8N2W9 510 aaPredicted RBP19.37■□□□□ 0.69
HPS3-205ENST00000478525 MSH5O43196 834 aa19.35■□□□□ 0.69
HPS3-205ENST00000478525 ADRA2BP18089 450 aa19.33■□□□□ 0.68
HPS3-205ENST00000478525 MAPK8IP2Q13387 824 aaPredicted RBP17.76■□□□□ 0.43
HPS3-205ENST00000478525 DMRT2Q9Y5R5 561 aa17.63■□□□□ 0.41
HPS3-205ENST00000478525 SCAF1Q9H7N4 1312 aaKnown RBP17.62■□□□□ 0.41
HPS3-205ENST00000478525 PPP4R3CPQ6ZMV5 832 aa17.35■□□□□ 0.37
HPS3-205ENST00000478525 CNKSR2Q8WXI2 1034 aa17■□□□□ 0.31
HPS3-205ENST00000478525 HOXD11P31277 338 aaPredicted RBP16.98■□□□□ 0.31
HPS3-205ENST00000478525 DCAF8L1A6NGE4 600 aa16.9■□□□□ 0.3
HPS3-205ENST00000478525 RNF216Q9NWF9 866 aaPredicted RBP16.85■□□□□ 0.29
HPS3-205ENST00000478525 NCBP3Q53F19 620 aaKnown RBP16.64■□□□□ 0.25
HPS3-205ENST00000478525 CACNB1Q02641 598 aaPredicted RBP16.61■□□□□ 0.25
HPS3-205ENST00000478525 RNF39Q9H2S5 420 aa16.54■□□□□ 0.24
HPS3-205ENST00000478525 NPM3O75607 178 aaKnown RBP16.46■□□□□ 0.23
HPS3-205ENST00000478525 DNAJC5BQ9UF47 199 aa16.36■□□□□ 0.21
HPS3-205ENST00000478525 C1QBPQ07021 282 aaKnown RBP16.27■□□□□ 0.2
HPS3-205ENST00000478525 KCNA4P22459 653 aa16.18■□□□□ 0.18
HPS3-205ENST00000478525 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.16■□□□□ 0.18
HPS3-205ENST00000478525 U3KPZ7 1027 aaPredicted RBP15.87■□□□□ 0.13
HPS3-205ENST00000478525 SLC4A2P04920 1241 aa15.73■□□□□ 0.11
HPS3-205ENST00000478525 SPINK5Q9NQ38 1064 aaPredicted RBP15.64■□□□□ 0.09
HPS3-205ENST00000478525 CAPN15O75808 1086 aa15.58■□□□□ 0.08
HPS3-205ENST00000478525 DSG3P32926 999 aa15.49■□□□□ 0.07
HPS3-205ENST00000478525 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.35■□□□□ 0.05
HPS3-205ENST00000478525 APLP2Q06481 763 aa15.35■□□□□ 0.05
HPS3-205ENST00000478525 HNRNPUL2Q1KMD3 747 aaKnown RBP15.35■□□□□ 0.05
HPS3-205ENST00000478525 TRHP20396 242 aaPredicted RBP15.34■□□□□ 0.05
HPS3-205ENST00000478525 ZNF219Q9P2Y4 722 aaPredicted RBP15.3■□□□□ 0.04
HPS3-205ENST00000478525 SAMD1Q6SPF0 538 aaPredicted RBP15.29■□□□□ 0.04
HPS3-205ENST00000478525 ABCB7O75027 752 aa15.25■□□□□ 0.03
HPS3-205ENST00000478525 SLC4A1APQ9BWU0 796 aaKnown RBP15.25■□□□□ 0.03
HPS3-205ENST00000478525 MYCNP04198 464 aaPredicted RBP15.21■□□□□ 0.03
HPS3-205ENST00000478525 POTEHQ6S545 545 aa15.21■□□□□ 0.03
HPS3-205ENST00000478525 FOXD4L1Q9NU39 408 aa15.07■□□□□ 0
HPS3-205ENST00000478525 POLA2Q14181 598 aa14.92□□□□□ -0.02
HPS3-205ENST00000478525 ZBTB22O15209 634 aa14.89□□□□□ -0.03
HPS3-205ENST00000478525 ATF5Q9Y2D1 282 aaPredicted RBP14.89□□□□□ -0.03
HPS3-205ENST00000478525 RBM42Q9BTD8 480 aaKnown RBP14.76□□□□□ -0.05
HPS3-205ENST00000478525 ZBTB12Q9Y330 459 aaPredicted RBP14.6□□□□□ -0.07
HPS3-205ENST00000478525 ATXN8OSP0DMR3 200 aa14.57□□□□□ -0.08
HPS3-205ENST00000478525 OSCARQ8IYS5 282 aa14.49□□□□□ -0.09
HPS3-205ENST00000478525 CHRDL2Q6WN34 429 aa14.45□□□□□ -0.1
HPS3-205ENST00000478525 AKT1S1Q96B36 256 aa14.42□□□□□ -0.1
HPS3-205ENST00000478525 REM2Q8IYK8 340 aaPredicted RBP14.3□□□□□ -0.12
HPS3-205ENST00000478525 FBLN2P98095 1184 aa14.25□□□□□ -0.13
HPS3-205ENST00000478525 MKRN4PQ13434 485 aaPredicted RBP14.21□□□□□ -0.13
HPS3-205ENST00000478525 CSRNP3Q8WYN3 585 aa14.19□□□□□ -0.14
HPS3-205ENST00000478525 PITPNM1O00562 1244 aa14.17□□□□□ -0.14
HPS3-205ENST00000478525 SPDYE2BA6NHP3 402 aa14.16□□□□□ -0.14
HPS3-205ENST00000478525 SPDYE6P0CI01 402 aa14.16□□□□□ -0.14
HPS3-205ENST00000478525 SPDYE2Q495Y8 402 aa14.16□□□□□ -0.14
HPS3-205ENST00000478525 PIP4P2Q8N4L2 257 aa14.12□□□□□ -0.15
HPS3-205ENST00000478525 EHMT2Q96KQ7 1210 aa14.03□□□□□ -0.16
HPS3-205ENST00000478525 FXR2P51116 673 aaKnown RBP eCLIP14.02□□□□□ -0.17
HPS3-205ENST00000478525 SSUH2Q9Y2M2 353 aa14.01□□□□□ -0.17
HPS3-205ENST00000478525 ZNF692Q9BU19 519 aaPredicted RBP13.99□□□□□ -0.17
HPS3-205ENST00000478525 SPDYE1Q8NFV5 336 aaPredicted RBP13.91□□□□□ -0.18
HPS3-205ENST00000478525 CLEC11AQ9Y240 323 aa13.9□□□□□ -0.18
HPS3-205ENST00000478525 SP7Q8TDD2 431 aaPredicted RBP13.88□□□□□ -0.19
HPS3-205ENST00000478525 HAX1O00165 279 aa13.83□□□□□ -0.2
HPS3-205ENST00000478525 PABPN1Q86U42 306 aaKnown RBP eCLIP13.81□□□□□ -0.2
HPS3-205ENST00000478525 PRKAR2AP13861 404 aaKnown RBP13.79□□□□□ -0.2
HPS3-205ENST00000478525 EVX2Q03828 476 aa13.7□□□□□ -0.22
HPS3-205ENST00000478525 CHADLQ6NUI6 762 aa13.66□□□□□ -0.22
HPS3-205ENST00000478525 PRR29P0C7W0 189 aa13.65□□□□□ -0.22
HPS3-205ENST00000478525 C19orf67A6NJJ6 358 aa13.58□□□□□ -0.24
HPS3-205ENST00000478525 SPDYE4A6NLX3 237 aa13.51□□□□□ -0.25
HPS3-205ENST00000478525 FARP1Q9Y4F1 1045 aaPredicted RBP13.43□□□□□ -0.26
HPS3-205ENST00000478525 STAG3Q9UJ98 1225 aa13.39□□□□□ -0.27
HPS3-205ENST00000478525 GABBR2O75899 941 aa13.37□□□□□ -0.27
HPS3-205ENST00000478525 CD44P16070 742 aaKnown RBP13.36□□□□□ -0.27
HPS3-205ENST00000478525 CREBZFQ9NS37 354 aa13.35□□□□□ -0.27
HPS3-205ENST00000478525 PROM2Q8N271 834 aa13.21□□□□□ -0.29
HPS3-205ENST00000478525 ZNF579Q8NAF0 562 aaKnown RBP13.16□□□□□ -0.3
HPS3-205ENST00000478525 ZRANB1Q9UGI0 708 aa13.16□□□□□ -0.3
HPS3-205ENST00000478525 MNX1P50219 401 aaPredicted RBP13.13□□□□□ -0.31
HPS3-205ENST00000478525 POTEIP0CG38 1075 aa13.12□□□□□ -0.31
HPS3-205ENST00000478525 CLCN6P51797 869 aa13.1□□□□□ -0.31
HPS3-205ENST00000478525 NPM1P06748 294 aaKnown RBP eCLIP13.06□□□□□ -0.32
HPS3-205ENST00000478525 PAK3O75914 559 aaPredicted RBP13.04□□□□□ -0.32
HPS3-205ENST00000478525 PHF12Q96QT6 1004 aa13.02□□□□□ -0.33
HPS3-205ENST00000478525 GALR2O43603 387 aaPredicted RBP13.01□□□□□ -0.33
HPS3-205ENST00000478525 LHX8Q68G74 356 aa13.01□□□□□ -0.33
HPS3-205ENST00000478525 DCBLD2Q96PD2 775 aa13□□□□□ -0.33
HPS3-205ENST00000478525 PLSCR2Q9NRY7 297 aa12.99□□□□□ -0.33
HPS3-205ENST00000478525 FKBP8Q14318 412 aa12.87□□□□□ -0.35
HPS3-205ENST00000478525 MIER1Q8N108 512 aa12.86□□□□□ -0.35
HPS3-205ENST00000478525 TSPYL2Q9H2G4 693 aaPredicted RBP12.86□□□□□ -0.35
HPS3-205ENST00000478525 MS4A3Q96HJ5 214 aa12.84□□□□□ -0.35
HPS3-205ENST00000478525 PLEKHG5O94827 1062 aa12.83□□□□□ -0.36
HPS3-205ENST00000478525 CCDC61Q9Y6R9 512 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms