RNA–Protein interactions for RNA: ENST00000478327.1

NECTIN3-204, Transcript of nectin cell adhesion molecule 3, humanhuman

TSL 4

Gene NECTIN3, Length 549 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECTIN3-204ENST00000478327 AEBP2Q6ZN18 517 aaPredicted RBP20.86■□□□□ 0.93
NECTIN3-204ENST00000478327 CHIC1Q5VXU3 224 aa20.22■□□□□ 0.83
NECTIN3-204ENST00000478327 SENP3Q9H4L4 574 aaPredicted RBP17.81■□□□□ 0.44
NECTIN3-204ENST00000478327 PHF23Q9BUL5 403 aaPredicted RBP17.71■□□□□ 0.43
NECTIN3-204ENST00000478327 FOXD1Q16676 465 aa16.49■□□□□ 0.23
NECTIN3-204ENST00000478327 PLPPR3Q6T4P5 718 aa16.33■□□□□ 0.2
NECTIN3-204ENST00000478327 PPP6R1Q9UPN7 881 aa15.66■□□□□ 0.1
NECTIN3-204ENST00000478327 ADRA2BP18089 450 aa15.62■□□□□ 0.09
NECTIN3-204ENST00000478327 PIAS4Q8N2W9 510 aaPredicted RBP15.51■□□□□ 0.07
NECTIN3-204ENST00000478327 MSH5O43196 834 aa15.37■□□□□ 0.05
NECTIN3-204ENST00000478327 SCAF1Q9H7N4 1312 aaKnown RBP14.39□□□□□ -0.11
NECTIN3-204ENST00000478327 PPP4R3CPQ6ZMV5 832 aa14.37□□□□□ -0.11
NECTIN3-204ENST00000478327 POTEDQ86YR6 584 aa14.3□□□□□ -0.12
NECTIN3-204ENST00000478327 KCNA4P22459 653 aa14.25□□□□□ -0.13
NECTIN3-204ENST00000478327 MAPK8IP2Q13387 824 aaPredicted RBP14.2□□□□□ -0.14
NECTIN3-204ENST00000478327 DMRT2Q9Y5R5 561 aa14.18□□□□□ -0.14
NECTIN3-204ENST00000478327 NCBP3Q53F19 620 aaKnown RBP14.12□□□□□ -0.15
NECTIN3-204ENST00000478327 CNKSR2Q8WXI2 1034 aa14.01□□□□□ -0.17
NECTIN3-204ENST00000478327 NPM3O75607 178 aaKnown RBP13.85□□□□□ -0.19
NECTIN3-204ENST00000478327 HOXD11P31277 338 aaPredicted RBP13.81□□□□□ -0.2
NECTIN3-204ENST00000478327 RNF216Q9NWF9 866 aaPredicted RBP13.81□□□□□ -0.2
NECTIN3-204ENST00000478327 SLC4A1APQ9BWU0 796 aaKnown RBP13.65□□□□□ -0.22
NECTIN3-204ENST00000478327 DNAJC5BQ9UF47 199 aa13.58□□□□□ -0.24
NECTIN3-204ENST00000478327 DCAF8L1A6NGE4 600 aa13.44□□□□□ -0.26
NECTIN3-204ENST00000478327 EHMT2Q96KQ7 1210 aa13.44□□□□□ -0.26
NECTIN3-204ENST00000478327 CSRNP3Q8WYN3 585 aa13.23□□□□□ -0.29
NECTIN3-204ENST00000478327 RNF39Q9H2S5 420 aa13.13□□□□□ -0.31
NECTIN3-204ENST00000478327 FOXD4L1Q9NU39 408 aa13.12□□□□□ -0.31
NECTIN3-204ENST00000478327 ZBTB22O15209 634 aa13.1□□□□□ -0.31
NECTIN3-204ENST00000478327 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.08□□□□□ -0.32
NECTIN3-204ENST00000478327 SLC4A2P04920 1241 aa13.01□□□□□ -0.33
NECTIN3-204ENST00000478327 C1QBPQ07021 282 aaKnown RBP12.98□□□□□ -0.33
NECTIN3-204ENST00000478327 U3KPZ7 1027 aaPredicted RBP12.88□□□□□ -0.35
NECTIN3-204ENST00000478327 CACNB1Q02641 598 aaPredicted RBP12.87□□□□□ -0.35
NECTIN3-204ENST00000478327 MYCNP04198 464 aaPredicted RBP12.85□□□□□ -0.35
NECTIN3-204ENST00000478327 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.71□□□□□ -0.37
NECTIN3-204ENST00000478327 ATXN8OSP0DMR3 200 aa12.71□□□□□ -0.37
NECTIN3-204ENST00000478327 HNRNPUL2Q1KMD3 747 aaKnown RBP12.71□□□□□ -0.37
NECTIN3-204ENST00000478327 APLP2Q06481 763 aa12.64□□□□□ -0.39
NECTIN3-204ENST00000478327 SAMD1Q6SPF0 538 aaPredicted RBP12.63□□□□□ -0.39
NECTIN3-204ENST00000478327 SPINK5Q9NQ38 1064 aaPredicted RBP12.54□□□□□ -0.4
NECTIN3-204ENST00000478327 CAPN15O75808 1086 aa12.5□□□□□ -0.41
NECTIN3-204ENST00000478327 ZNF219Q9P2Y4 722 aaPredicted RBP12.47□□□□□ -0.41
NECTIN3-204ENST00000478327 DSG3P32926 999 aa12.39□□□□□ -0.43
NECTIN3-204ENST00000478327 ATF5Q9Y2D1 282 aaPredicted RBP12.37□□□□□ -0.43
NECTIN3-204ENST00000478327 TRHP20396 242 aaPredicted RBP12.36□□□□□ -0.43
NECTIN3-204ENST00000478327 ABCB7O75027 752 aa12.21□□□□□ -0.45
NECTIN3-204ENST00000478327 POLA2Q14181 598 aa12.14□□□□□ -0.47
NECTIN3-204ENST00000478327 ZBTB12Q9Y330 459 aaPredicted RBP12.04□□□□□ -0.48
NECTIN3-204ENST00000478327 FBLN2P98095 1184 aa11.94□□□□□ -0.5
NECTIN3-204ENST00000478327 FKBP8Q14318 412 aa11.94□□□□□ -0.5
NECTIN3-204ENST00000478327 MKRN4PQ13434 485 aaPredicted RBP11.89□□□□□ -0.51
NECTIN3-204ENST00000478327 RBM42Q9BTD8 480 aaKnown RBP11.87□□□□□ -0.51
NECTIN3-204ENST00000478327 OSCARQ8IYS5 282 aa11.76□□□□□ -0.53
NECTIN3-204ENST00000478327 SPDYE4A6NLX3 237 aa11.75□□□□□ -0.53
NECTIN3-204ENST00000478327 SPDYE2BA6NHP3 402 aa11.67□□□□□ -0.54
NECTIN3-204ENST00000478327 SPDYE6P0CI01 402 aa11.67□□□□□ -0.54
NECTIN3-204ENST00000478327 SPDYE2Q495Y8 402 aa11.67□□□□□ -0.54
NECTIN3-204ENST00000478327 PROM2Q8N271 834 aa11.66□□□□□ -0.54
NECTIN3-204ENST00000478327 AKT1S1Q96B36 256 aa11.66□□□□□ -0.54
NECTIN3-204ENST00000478327 FBXO3Q9UK99 471 aa11.56□□□□□ -0.56
NECTIN3-204ENST00000478327 SSUH2Q9Y2M2 353 aa11.56□□□□□ -0.56
NECTIN3-204ENST00000478327 ZNF692Q9BU19 519 aaPredicted RBP11.53□□□□□ -0.56
NECTIN3-204ENST00000478327 REM2Q8IYK8 340 aaPredicted RBP11.49□□□□□ -0.57
NECTIN3-204ENST00000478327 CHRDL2Q6WN34 429 aa11.4□□□□□ -0.58
NECTIN3-204ENST00000478327 PABPN1Q86U42 306 aaKnown RBP eCLIP11.38□□□□□ -0.59
NECTIN3-204ENST00000478327 PITPNM1O00562 1244 aa11.37□□□□□ -0.59
NECTIN3-204ENST00000478327 AMER1Q5JTC6 1135 aaPredicted RBP11.37□□□□□ -0.59
NECTIN3-204ENST00000478327 SPDYE1Q8NFV5 336 aaPredicted RBP11.36□□□□□ -0.59
NECTIN3-204ENST00000478327 VASPP50552 380 aaPredicted RBP11.34□□□□□ -0.59
NECTIN3-204ENST00000478327 STAG3Q9UJ98 1225 aa11.34□□□□□ -0.59
NECTIN3-204ENST00000478327 POTEHQ6S545 545 aa11.3□□□□□ -0.6
NECTIN3-204ENST00000478327 FXR2P51116 673 aaKnown RBP eCLIP11.23□□□□□ -0.61
NECTIN3-204ENST00000478327 RTN4Q9NQC3 1192 aaKnown RBP11.23□□□□□ -0.61
NECTIN3-204ENST00000478327 CLEC11AQ9Y240 323 aa11.23□□□□□ -0.61
NECTIN3-204ENST00000478327 PIP4P2Q8N4L2 257 aa11.2□□□□□ -0.62
NECTIN3-204ENST00000478327 IFNLR1Q8IU57 520 aaPredicted RBP11.16□□□□□ -0.62
NECTIN3-204ENST00000478327 PRR29P0C7W0 189 aa11.13□□□□□ -0.63
NECTIN3-204ENST00000478327 PLCD3Q8N3E9 789 aa11.12□□□□□ -0.63
NECTIN3-204ENST00000478327 PLEKHG5O94827 1062 aa11.1□□□□□ -0.63
NECTIN3-204ENST00000478327 MIER1Q8N108 512 aa11.09□□□□□ -0.63
NECTIN3-204ENST00000478327 ZBTB47Q9UFB7 747 aaPredicted RBP11.07□□□□□ -0.64
NECTIN3-204ENST00000478327 PRKAR2AP13861 404 aaKnown RBP11.06□□□□□ -0.64
NECTIN3-204ENST00000478327 KLHL34Q8N239 644 aa11.05□□□□□ -0.64
NECTIN3-204ENST00000478327 SPOCK2Q92563 424 aa11.04□□□□□ -0.64
NECTIN3-204ENST00000478327 CHADLQ6NUI6 762 aa10.97□□□□□ -0.65
NECTIN3-204ENST00000478327 CREBZFQ9NS37 354 aa10.97□□□□□ -0.65
NECTIN3-204ENST00000478327 FARP1Q9Y4F1 1045 aaPredicted RBP10.91□□□□□ -0.66
NECTIN3-204ENST00000478327 PKD2Q13563 968 aa10.89□□□□□ -0.67
NECTIN3-204ENST00000478327 C19orf67A6NJJ6 358 aa10.86□□□□□ -0.67
NECTIN3-204ENST00000478327 MNX1P50219 401 aaPredicted RBP10.86□□□□□ -0.67
NECTIN3-204ENST00000478327 HAX1O00165 279 aa10.85□□□□□ -0.67
NECTIN3-204ENST00000478327 NPM1P06748 294 aaKnown RBP eCLIP10.82□□□□□ -0.68
NECTIN3-204ENST00000478327 NUBP1P53384 320 aa10.82□□□□□ -0.68
NECTIN3-204ENST00000478327 TRIM41Q8WV44 630 aa10.82□□□□□ -0.68
NECTIN3-204ENST00000478327 GSE1Q14687 1217 aa10.81□□□□□ -0.68
NECTIN3-204ENST00000478327 ECM2O94769 699 aaPredicted RBP10.78□□□□□ -0.68
NECTIN3-204ENST00000478327 SP7Q8TDD2 431 aaPredicted RBP10.77□□□□□ -0.69
NECTIN3-204ENST00000478327 CIZ1Q9ULV3 898 aaPredicted RBP10.77□□□□□ -0.69
NECTIN3-204ENST00000478327 FAM212AQ96EL1 285 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms