RNA–Protein interactions for RNA: ENST00000478238.1

SYCP3-205, Transcript of synaptonemal complex protein 3, humanhuman

TSL 3

Gene SYCP3, Length 665 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYCP3-205ENST00000478238 AEBP2Q6ZN18 517 aaPredicted RBP31.5■■■□□ 2.63
SYCP3-205ENST00000478238 CHIC1Q5VXU3 224 aa30.19■■■□□ 2.42
SYCP3-205ENST00000478238 SENP3Q9H4L4 574 aaPredicted RBP26.81■■□□□ 1.88
SYCP3-205ENST00000478238 PHF23Q9BUL5 403 aaPredicted RBP26.51■■□□□ 1.83
SYCP3-205ENST00000478238 FOXD1Q16676 465 aa24.96■■□□□ 1.59
SYCP3-205ENST00000478238 PLPPR3Q6T4P5 718 aa24.25■■□□□ 1.47
SYCP3-205ENST00000478238 PPP6R1Q9UPN7 881 aa23.57■■□□□ 1.36
SYCP3-205ENST00000478238 ADRA2BP18089 450 aa23.51■■□□□ 1.35
SYCP3-205ENST00000478238 PIAS4Q8N2W9 510 aaPredicted RBP23.4■■□□□ 1.34
SYCP3-205ENST00000478238 MSH5O43196 834 aa23.24■■□□□ 1.31
SYCP3-205ENST00000478238 POTEDQ86YR6 584 aa22.19■■□□□ 1.14
SYCP3-205ENST00000478238 MAPK8IP2Q13387 824 aaPredicted RBP21.5■■□□□ 1.03
SYCP3-205ENST00000478238 SCAF1Q9H7N4 1312 aaKnown RBP21.5■■□□□ 1.03
SYCP3-205ENST00000478238 PPP4R3CPQ6ZMV5 832 aa21.31■■□□□ 1
SYCP3-205ENST00000478238 DMRT2Q9Y5R5 561 aa21.31■■□□□ 1
SYCP3-205ENST00000478238 CNKSR2Q8WXI2 1034 aa20.83■□□□□ 0.93
SYCP3-205ENST00000478238 HOXD11P31277 338 aaPredicted RBP20.64■□□□□ 0.89
SYCP3-205ENST00000478238 NCBP3Q53F19 620 aaKnown RBP20.57■□□□□ 0.88
SYCP3-205ENST00000478238 RNF216Q9NWF9 866 aaPredicted RBP20.56■□□□□ 0.88
SYCP3-205ENST00000478238 DCAF8L1A6NGE4 600 aa20.42■□□□□ 0.86
SYCP3-205ENST00000478238 NPM3O75607 178 aaKnown RBP20.28■□□□□ 0.84
SYCP3-205ENST00000478238 KCNA4P22459 653 aa20.15■□□□□ 0.82
SYCP3-205ENST00000478238 RNF39Q9H2S5 420 aa19.86■□□□□ 0.77
SYCP3-205ENST00000478238 DNAJC5BQ9UF47 199 aa19.86■□□□□ 0.77
SYCP3-205ENST00000478238 CACNB1Q02641 598 aaPredicted RBP19.77■□□□□ 0.76
SYCP3-205ENST00000478238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.67■□□□□ 0.74
SYCP3-205ENST00000478238 C1QBPQ07021 282 aaKnown RBP19.58■□□□□ 0.72
SYCP3-205ENST00000478238 SLC4A2P04920 1241 aa19.29■□□□□ 0.68
SYCP3-205ENST00000478238 U3KPZ7 1027 aaPredicted RBP19.29■□□□□ 0.68
SYCP3-205ENST00000478238 SLC4A1APQ9BWU0 796 aaKnown RBP19.08■□□□□ 0.64
SYCP3-205ENST00000478238 SPINK5Q9NQ38 1064 aaPredicted RBP18.93■□□□□ 0.62
SYCP3-205ENST00000478238 CAPN15O75808 1086 aa18.87■□□□□ 0.61
SYCP3-205ENST00000478238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.83■□□□□ 0.6
SYCP3-205ENST00000478238 HNRNPUL2Q1KMD3 747 aaKnown RBP18.83■□□□□ 0.6
SYCP3-205ENST00000478238 APLP2Q06481 763 aa18.78■□□□□ 0.6
SYCP3-205ENST00000478238 MYCNP04198 464 aaPredicted RBP18.75■□□□□ 0.59
SYCP3-205ENST00000478238 SAMD1Q6SPF0 538 aaPredicted RBP18.75■□□□□ 0.59
SYCP3-205ENST00000478238 FOXD4L1Q9NU39 408 aa18.71■□□□□ 0.59
SYCP3-205ENST00000478238 DSG3P32926 999 aa18.7■□□□□ 0.58
SYCP3-205ENST00000478238 TRHP20396 242 aaPredicted RBP18.65■□□□□ 0.58
SYCP3-205ENST00000478238 ZNF219Q9P2Y4 722 aaPredicted RBP18.62■□□□□ 0.57
SYCP3-205ENST00000478238 ZBTB22O15209 634 aa18.54■□□□□ 0.56
SYCP3-205ENST00000478238 ABCB7O75027 752 aa18.48■□□□□ 0.55
SYCP3-205ENST00000478238 ATF5Q9Y2D1 282 aaPredicted RBP18.3■□□□□ 0.52
SYCP3-205ENST00000478238 POLA2Q14181 598 aa18.21■□□□□ 0.51
SYCP3-205ENST00000478238 ATXN8OSP0DMR3 200 aa18.1■□□□□ 0.49
SYCP3-205ENST00000478238 CSRNP3Q8WYN3 585 aa17.95■□□□□ 0.46
SYCP3-205ENST00000478238 EHMT2Q96KQ7 1210 aa17.87■□□□□ 0.45
SYCP3-205ENST00000478238 ZBTB12Q9Y330 459 aaPredicted RBP17.86■□□□□ 0.45
SYCP3-205ENST00000478238 RBM42Q9BTD8 480 aaKnown RBP17.83■□□□□ 0.44
SYCP3-205ENST00000478238 OSCARQ8IYS5 282 aa17.63■□□□□ 0.41
SYCP3-205ENST00000478238 FBLN2P98095 1184 aa17.56■□□□□ 0.4
SYCP3-205ENST00000478238 AKT1S1Q96B36 256 aa17.49■□□□□ 0.39
SYCP3-205ENST00000478238 MKRN4PQ13434 485 aaPredicted RBP17.47■□□□□ 0.39
SYCP3-205ENST00000478238 POTEHQ6S545 545 aa17.44■□□□□ 0.38
SYCP3-205ENST00000478238 SPDYE2BA6NHP3 402 aa17.34■□□□□ 0.37
SYCP3-205ENST00000478238 SPDYE6P0CI01 402 aa17.34■□□□□ 0.37
SYCP3-205ENST00000478238 SPDYE2Q495Y8 402 aa17.34■□□□□ 0.37
SYCP3-205ENST00000478238 CHRDL2Q6WN34 429 aa17.32■□□□□ 0.36
SYCP3-205ENST00000478238 REM2Q8IYK8 340 aaPredicted RBP17.32■□□□□ 0.36
SYCP3-205ENST00000478238 ZNF692Q9BU19 519 aaPredicted RBP17.18■□□□□ 0.34
SYCP3-205ENST00000478238 SSUH2Q9Y2M2 353 aa17.15■□□□□ 0.34
SYCP3-205ENST00000478238 PITPNM1O00562 1244 aa17.14■□□□□ 0.33
SYCP3-205ENST00000478238 PIP4P2Q8N4L2 257 aa16.98■□□□□ 0.31
SYCP3-205ENST00000478238 SPDYE1Q8NFV5 336 aaPredicted RBP16.97■□□□□ 0.31
SYCP3-205ENST00000478238 PABPN1Q86U42 306 aaKnown RBP eCLIP16.94■□□□□ 0.3
SYCP3-205ENST00000478238 FXR2P51116 673 aaKnown RBP eCLIP16.93■□□□□ 0.3
SYCP3-205ENST00000478238 CLEC11AQ9Y240 323 aa16.92■□□□□ 0.3
SYCP3-205ENST00000478238 SPDYE4A6NLX3 237 aa16.79■□□□□ 0.28
SYCP3-205ENST00000478238 PRKAR2AP13861 404 aaKnown RBP16.7■□□□□ 0.26
SYCP3-205ENST00000478238 PRR29P0C7W0 189 aa16.68■□□□□ 0.26
SYCP3-205ENST00000478238 HAX1O00165 279 aa16.59■□□□□ 0.25
SYCP3-205ENST00000478238 CHADLQ6NUI6 762 aa16.58■□□□□ 0.24
SYCP3-205ENST00000478238 STAG3Q9UJ98 1225 aa16.53■□□□□ 0.24
SYCP3-205ENST00000478238 SP7Q8TDD2 431 aaPredicted RBP16.49■□□□□ 0.23
SYCP3-205ENST00000478238 PROM2Q8N271 834 aa16.44■□□□□ 0.22
SYCP3-205ENST00000478238 EVX2Q03828 476 aa16.41■□□□□ 0.22
SYCP3-205ENST00000478238 C19orf67A6NJJ6 358 aa16.37■□□□□ 0.21
SYCP3-205ENST00000478238 FARP1Q9Y4F1 1045 aaPredicted RBP16.35■□□□□ 0.21
SYCP3-205ENST00000478238 CREBZFQ9NS37 354 aa16.34■□□□□ 0.21
SYCP3-205ENST00000478238 FKBP8Q14318 412 aa16.26■□□□□ 0.19
SYCP3-205ENST00000478238 CD44P16070 742 aaKnown RBP16.18■□□□□ 0.18
SYCP3-205ENST00000478238 MNX1P50219 401 aaPredicted RBP16.11■□□□□ 0.17
SYCP3-205ENST00000478238 GABBR2O75899 941 aa16.06■□□□□ 0.16
SYCP3-205ENST00000478238 NPM1P06748 294 aaKnown RBP eCLIP16.05■□□□□ 0.16
SYCP3-205ENST00000478238 ZRANB1Q9UGI0 708 aa16.01■□□□□ 0.15
SYCP3-205ENST00000478238 MIER1Q8N108 512 aa15.98■□□□□ 0.15
SYCP3-205ENST00000478238 ZNF579Q8NAF0 562 aaKnown RBP15.95■□□□□ 0.14
SYCP3-205ENST00000478238 PAK3O75914 559 aaPredicted RBP15.94■□□□□ 0.14
SYCP3-205ENST00000478238 PLEKHG5O94827 1062 aa15.94■□□□□ 0.14
SYCP3-205ENST00000478238 CLCN6P51797 869 aa15.9■□□□□ 0.14
SYCP3-205ENST00000478238 PLCD3Q8N3E9 789 aa15.9■□□□□ 0.14
SYCP3-205ENST00000478238 FBXO3Q9UK99 471 aa15.83■□□□□ 0.12
SYCP3-205ENST00000478238 PHF12Q96QT6 1004 aa15.81■□□□□ 0.12
SYCP3-205ENST00000478238 TSPYL2Q9H2G4 693 aaPredicted RBP15.78■□□□□ 0.12
SYCP3-205ENST00000478238 ZBTB47Q9UFB7 747 aaPredicted RBP15.75■□□□□ 0.11
SYCP3-205ENST00000478238 GALR2O43603 387 aaPredicted RBP15.74■□□□□ 0.11
SYCP3-205ENST00000478238 POTEIP0CG38 1075 aa15.72■□□□□ 0.11
SYCP3-205ENST00000478238 RASEFQ8IZ41 740 aa15.71■□□□□ 0.11
SYCP3-205ENST00000478238 CCDC61Q9Y6R9 512 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms