RNA–Protein interactions for RNA: ENST00000478043.1

SMIM9-202, Transcript of small integral membrane protein 9, humanhuman

TSL 4

Gene SMIM9, Length 593 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM9-202ENST00000478043 AEBP2Q6ZN18 517 aaPredicted RBP25.06■■□□□ 1.6
SMIM9-202ENST00000478043 CHIC1Q5VXU3 224 aa24.08■■□□□ 1.45
SMIM9-202ENST00000478043 PHF23Q9BUL5 403 aaPredicted RBP21.25■□□□□ 0.99
SMIM9-202ENST00000478043 SENP3Q9H4L4 574 aaPredicted RBP21.14■□□□□ 0.97
SMIM9-202ENST00000478043 FOXD1Q16676 465 aa19.79■□□□□ 0.76
SMIM9-202ENST00000478043 PLPPR3Q6T4P5 718 aa19.38■□□□□ 0.69
SMIM9-202ENST00000478043 PPP6R1Q9UPN7 881 aa18.9■□□□□ 0.62
SMIM9-202ENST00000478043 ADRA2BP18089 450 aa18.87■□□□□ 0.61
SMIM9-202ENST00000478043 PIAS4Q8N2W9 510 aaPredicted RBP18.56■□□□□ 0.56
SMIM9-202ENST00000478043 MSH5O43196 834 aa18.2■□□□□ 0.5
SMIM9-202ENST00000478043 MAPK8IP2Q13387 824 aaPredicted RBP17.25■□□□□ 0.35
SMIM9-202ENST00000478043 POTEDQ86YR6 584 aa17.22■□□□□ 0.35
SMIM9-202ENST00000478043 PPP4R3CPQ6ZMV5 832 aa17.13■□□□□ 0.33
SMIM9-202ENST00000478043 SCAF1Q9H7N4 1312 aaKnown RBP17.06■□□□□ 0.32
SMIM9-202ENST00000478043 DMRT2Q9Y5R5 561 aa16.86■□□□□ 0.29
SMIM9-202ENST00000478043 CNKSR2Q8WXI2 1034 aa16.64■□□□□ 0.25
SMIM9-202ENST00000478043 NCBP3Q53F19 620 aaKnown RBP16.5■□□□□ 0.23
SMIM9-202ENST00000478043 KCNA4P22459 653 aa16.47■□□□□ 0.23
SMIM9-202ENST00000478043 HOXD11P31277 338 aaPredicted RBP16.38■□□□□ 0.21
SMIM9-202ENST00000478043 RNF216Q9NWF9 866 aaPredicted RBP16.37■□□□□ 0.21
SMIM9-202ENST00000478043 NPM3O75607 178 aaKnown RBP16.36■□□□□ 0.21
SMIM9-202ENST00000478043 DCAF8L1A6NGE4 600 aa16.3■□□□□ 0.2
SMIM9-202ENST00000478043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.7■□□□□ 0.1
SMIM9-202ENST00000478043 DNAJC5BQ9UF47 199 aa15.68■□□□□ 0.1
SMIM9-202ENST00000478043 RNF39Q9H2S5 420 aa15.64■□□□□ 0.09
SMIM9-202ENST00000478043 SLC4A1APQ9BWU0 796 aaKnown RBP15.57■□□□□ 0.08
SMIM9-202ENST00000478043 SLC4A2P04920 1241 aa15.55■□□□□ 0.08
SMIM9-202ENST00000478043 CACNB1Q02641 598 aaPredicted RBP15.5■□□□□ 0.07
SMIM9-202ENST00000478043 U3KPZ7 1027 aaPredicted RBP15.41■□□□□ 0.06
SMIM9-202ENST00000478043 C1QBPQ07021 282 aaKnown RBP15.38■□□□□ 0.05
SMIM9-202ENST00000478043 ZBTB22O15209 634 aa15.16■□□□□ 0.02
SMIM9-202ENST00000478043 SPINK5Q9NQ38 1064 aaPredicted RBP15.13■□□□□ 0.01
SMIM9-202ENST00000478043 FOXD4L1Q9NU39 408 aa15.12■□□□□ 0.01
SMIM9-202ENST00000478043 CAPN15O75808 1086 aa15.05■□□□□ -0
SMIM9-202ENST00000478043 MYCNP04198 464 aaPredicted RBP15.02■□□□□ -0
SMIM9-202ENST00000478043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.95□□□□□ -0.02
SMIM9-202ENST00000478043 HNRNPUL2Q1KMD3 747 aaKnown RBP14.95□□□□□ -0.02
SMIM9-202ENST00000478043 TRHP20396 242 aaPredicted RBP14.94□□□□□ -0.02
SMIM9-202ENST00000478043 SAMD1Q6SPF0 538 aaPredicted RBP14.92□□□□□ -0.02
SMIM9-202ENST00000478043 EHMT2Q96KQ7 1210 aa14.91□□□□□ -0.02
SMIM9-202ENST00000478043 ATF5Q9Y2D1 282 aaPredicted RBP14.84□□□□□ -0.03
SMIM9-202ENST00000478043 CSRNP3Q8WYN3 585 aa14.83□□□□□ -0.04
SMIM9-202ENST00000478043 DSG3P32926 999 aa14.82□□□□□ -0.04
SMIM9-202ENST00000478043 APLP2Q06481 763 aa14.82□□□□□ -0.04
SMIM9-202ENST00000478043 ABCB7O75027 752 aa14.8□□□□□ -0.04
SMIM9-202ENST00000478043 ZNF219Q9P2Y4 722 aaPredicted RBP14.74□□□□□ -0.05
SMIM9-202ENST00000478043 POLA2Q14181 598 aa14.62□□□□□ -0.07
SMIM9-202ENST00000478043 ATXN8OSP0DMR3 200 aa14.53□□□□□ -0.08
SMIM9-202ENST00000478043 ZBTB12Q9Y330 459 aaPredicted RBP14.14□□□□□ -0.15
SMIM9-202ENST00000478043 MKRN4PQ13434 485 aaPredicted RBP14.12□□□□□ -0.15
SMIM9-202ENST00000478043 OSCARQ8IYS5 282 aa14.1□□□□□ -0.15
SMIM9-202ENST00000478043 FBLN2P98095 1184 aa14.06□□□□□ -0.16
SMIM9-202ENST00000478043 RBM42Q9BTD8 480 aaKnown RBP14□□□□□ -0.17
SMIM9-202ENST00000478043 AKT1S1Q96B36 256 aa13.81□□□□□ -0.2
SMIM9-202ENST00000478043 ZNF692Q9BU19 519 aaPredicted RBP13.81□□□□□ -0.2
SMIM9-202ENST00000478043 SPDYE2BA6NHP3 402 aa13.8□□□□□ -0.2
SMIM9-202ENST00000478043 SPDYE6P0CI01 402 aa13.8□□□□□ -0.2
SMIM9-202ENST00000478043 SPDYE2Q495Y8 402 aa13.8□□□□□ -0.2
SMIM9-202ENST00000478043 REM2Q8IYK8 340 aaPredicted RBP13.78□□□□□ -0.2
SMIM9-202ENST00000478043 SSUH2Q9Y2M2 353 aa13.68□□□□□ -0.22
SMIM9-202ENST00000478043 CHRDL2Q6WN34 429 aa13.64□□□□□ -0.23
SMIM9-202ENST00000478043 SPDYE4A6NLX3 237 aa13.63□□□□□ -0.23
SMIM9-202ENST00000478043 PABPN1Q86U42 306 aaKnown RBP eCLIP13.63□□□□□ -0.23
SMIM9-202ENST00000478043 PITPNM1O00562 1244 aa13.62□□□□□ -0.23
SMIM9-202ENST00000478043 CLEC11AQ9Y240 323 aa13.58□□□□□ -0.24
SMIM9-202ENST00000478043 POTEHQ6S545 545 aa13.55□□□□□ -0.24
SMIM9-202ENST00000478043 SPDYE1Q8NFV5 336 aaPredicted RBP13.48□□□□□ -0.25
SMIM9-202ENST00000478043 PIP4P2Q8N4L2 257 aa13.44□□□□□ -0.26
SMIM9-202ENST00000478043 FKBP8Q14318 412 aa13.42□□□□□ -0.26
SMIM9-202ENST00000478043 FXR2P51116 673 aaKnown RBP eCLIP13.38□□□□□ -0.27
SMIM9-202ENST00000478043 PRR29P0C7W0 189 aa13.35□□□□□ -0.27
SMIM9-202ENST00000478043 CHADLQ6NUI6 762 aa13.31□□□□□ -0.28
SMIM9-202ENST00000478043 PRKAR2AP13861 404 aaKnown RBP13.29□□□□□ -0.28
SMIM9-202ENST00000478043 PROM2Q8N271 834 aa13.25□□□□□ -0.29
SMIM9-202ENST00000478043 STAG3Q9UJ98 1225 aa13.2□□□□□ -0.3
SMIM9-202ENST00000478043 HAX1O00165 279 aa13.13□□□□□ -0.31
SMIM9-202ENST00000478043 CREBZFQ9NS37 354 aa13.12□□□□□ -0.31
SMIM9-202ENST00000478043 EVX2Q03828 476 aa13.08□□□□□ -0.32
SMIM9-202ENST00000478043 FARP1Q9Y4F1 1045 aaPredicted RBP13.05□□□□□ -0.32
SMIM9-202ENST00000478043 MIER1Q8N108 512 aa13□□□□□ -0.33
SMIM9-202ENST00000478043 C19orf67A6NJJ6 358 aa12.94□□□□□ -0.34
SMIM9-202ENST00000478043 MNX1P50219 401 aaPredicted RBP12.94□□□□□ -0.34
SMIM9-202ENST00000478043 PLCD3Q8N3E9 789 aa12.91□□□□□ -0.34
SMIM9-202ENST00000478043 CD44P16070 742 aaKnown RBP12.87□□□□□ -0.35
SMIM9-202ENST00000478043 SP7Q8TDD2 431 aaPredicted RBP12.87□□□□□ -0.35
SMIM9-202ENST00000478043 FBXO3Q9UK99 471 aa12.87□□□□□ -0.35
SMIM9-202ENST00000478043 NPM1P06748 294 aaKnown RBP eCLIP12.81□□□□□ -0.36
SMIM9-202ENST00000478043 PLEKHG5O94827 1062 aa12.8□□□□□ -0.36
SMIM9-202ENST00000478043 ZRANB1Q9UGI0 708 aa12.79□□□□□ -0.36
SMIM9-202ENST00000478043 VASPP50552 380 aaPredicted RBP12.78□□□□□ -0.36
SMIM9-202ENST00000478043 TSPYL2Q9H2G4 693 aaPredicted RBP12.75□□□□□ -0.37
SMIM9-202ENST00000478043 GABBR2O75899 941 aa12.71□□□□□ -0.37
SMIM9-202ENST00000478043 KLHL34Q8N239 644 aa12.71□□□□□ -0.37
SMIM9-202ENST00000478043 RASEFQ8IZ41 740 aa12.7□□□□□ -0.38
SMIM9-202ENST00000478043 PHF12Q96QT6 1004 aa12.68□□□□□ -0.38
SMIM9-202ENST00000478043 PAK3O75914 559 aaPredicted RBP12.66□□□□□ -0.38
SMIM9-202ENST00000478043 NUBP1P53384 320 aa12.65□□□□□ -0.38
SMIM9-202ENST00000478043 IFNLR1Q8IU57 520 aaPredicted RBP12.65□□□□□ -0.38
SMIM9-202ENST00000478043 ZBTB47Q9UFB7 747 aaPredicted RBP12.63□□□□□ -0.39
SMIM9-202ENST00000478043 ZNF579Q8NAF0 562 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms