RNA–Protein interactions for RNA: ENST00000477988.1

NCKAP1-204, Transcript of NCK associated protein 1, humanhuman

TSL 2

Gene NCKAP1, Length 612 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKAP1-204ENST00000477988 AEBP2Q6ZN18 517 aaPredicted RBP30.76■■■□□ 2.51
NCKAP1-204ENST00000477988 CHIC1Q5VXU3 224 aa28.74■■■□□ 2.19
NCKAP1-204ENST00000477988 SENP3Q9H4L4 574 aaPredicted RBP26.28■■□□□ 1.8
NCKAP1-204ENST00000477988 PHF23Q9BUL5 403 aaPredicted RBP25.89■■□□□ 1.74
NCKAP1-204ENST00000477988 FOXD1Q16676 465 aa24.58■■□□□ 1.53
NCKAP1-204ENST00000477988 POTEDQ86YR6 584 aa23.43■■□□□ 1.34
NCKAP1-204ENST00000477988 MSH5O43196 834 aa23.16■■□□□ 1.3
NCKAP1-204ENST00000477988 PIAS4Q8N2W9 510 aaPredicted RBP22.8■■□□□ 1.24
NCKAP1-204ENST00000477988 PLPPR3Q6T4P5 718 aa22.72■■□□□ 1.23
NCKAP1-204ENST00000477988 PPP6R1Q9UPN7 881 aa22.62■■□□□ 1.21
NCKAP1-204ENST00000477988 ADRA2BP18089 450 aa22.49■■□□□ 1.19
NCKAP1-204ENST00000477988 MAPK8IP2Q13387 824 aaPredicted RBP20.81■□□□□ 0.92
NCKAP1-204ENST00000477988 DMRT2Q9Y5R5 561 aa20.79■□□□□ 0.92
NCKAP1-204ENST00000477988 SCAF1Q9H7N4 1312 aaKnown RBP20.55■□□□□ 0.88
NCKAP1-204ENST00000477988 CACNB1Q02641 598 aaPredicted RBP20.13■□□□□ 0.81
NCKAP1-204ENST00000477988 PPP4R3CPQ6ZMV5 832 aa19.86■□□□□ 0.77
NCKAP1-204ENST00000477988 DCAF8L1A6NGE4 600 aa19.85■□□□□ 0.77
NCKAP1-204ENST00000477988 HOXD11P31277 338 aaPredicted RBP19.85■□□□□ 0.77
NCKAP1-204ENST00000477988 RNF39Q9H2S5 420 aa19.74■□□□□ 0.75
NCKAP1-204ENST00000477988 CNKSR2Q8WXI2 1034 aa19.6■□□□□ 0.73
NCKAP1-204ENST00000477988 RNF216Q9NWF9 866 aaPredicted RBP19.56■□□□□ 0.72
NCKAP1-204ENST00000477988 C1QBPQ07021 282 aaKnown RBP19.42■□□□□ 0.7
NCKAP1-204ENST00000477988 DNAJC5BQ9UF47 199 aa19.3■□□□□ 0.68
NCKAP1-204ENST00000477988 NCBP3Q53F19 620 aaKnown RBP18.92■□□□□ 0.62
NCKAP1-204ENST00000477988 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.83■□□□□ 0.6
NCKAP1-204ENST00000477988 NPM3O75607 178 aaKnown RBP18.69■□□□□ 0.58
NCKAP1-204ENST00000477988 U3KPZ7 1027 aaPredicted RBP18.44■□□□□ 0.54
NCKAP1-204ENST00000477988 DSG3P32926 999 aa18.32■□□□□ 0.52
NCKAP1-204ENST00000477988 SPINK5Q9NQ38 1064 aaPredicted RBP18.3■□□□□ 0.52
NCKAP1-204ENST00000477988 POTEHQ6S545 545 aa18.26■□□□□ 0.51
NCKAP1-204ENST00000477988 CAPN15O75808 1086 aa18.25■□□□□ 0.51
NCKAP1-204ENST00000477988 SLC4A2P04920 1241 aa17.99■□□□□ 0.47
NCKAP1-204ENST00000477988 KCNA4P22459 653 aa17.89■□□□□ 0.45
NCKAP1-204ENST00000477988 TRHP20396 242 aaPredicted RBP17.84■□□□□ 0.45
NCKAP1-204ENST00000477988 APLP2Q06481 763 aa17.83■□□□□ 0.44
NCKAP1-204ENST00000477988 ZNF219Q9P2Y4 722 aaPredicted RBP17.82■□□□□ 0.44
NCKAP1-204ENST00000477988 ABCB7O75027 752 aa17.79■□□□□ 0.44
NCKAP1-204ENST00000477988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.71■□□□□ 0.43
NCKAP1-204ENST00000477988 HNRNPUL2Q1KMD3 747 aaKnown RBP17.71■□□□□ 0.43
NCKAP1-204ENST00000477988 SAMD1Q6SPF0 538 aaPredicted RBP17.6■□□□□ 0.41
NCKAP1-204ENST00000477988 RBM42Q9BTD8 480 aaKnown RBP17.46■□□□□ 0.39
NCKAP1-204ENST00000477988 MYCNP04198 464 aaPredicted RBP17.28■□□□□ 0.36
NCKAP1-204ENST00000477988 POLA2Q14181 598 aa17.28■□□□□ 0.36
NCKAP1-204ENST00000477988 CHRDL2Q6WN34 429 aa17.27■□□□□ 0.36
NCKAP1-204ENST00000477988 AKT1S1Q96B36 256 aa16.98■□□□□ 0.31
NCKAP1-204ENST00000477988 ATF5Q9Y2D1 282 aaPredicted RBP16.94■□□□□ 0.3
NCKAP1-204ENST00000477988 SP7Q8TDD2 431 aaPredicted RBP16.89■□□□□ 0.29
NCKAP1-204ENST00000477988 ZBTB12Q9Y330 459 aaPredicted RBP16.89■□□□□ 0.29
NCKAP1-204ENST00000477988 FOXD4L1Q9NU39 408 aa16.84■□□□□ 0.29
NCKAP1-204ENST00000477988 REM2Q8IYK8 340 aaPredicted RBP16.81■□□□□ 0.28
NCKAP1-204ENST00000477988 PIP4P2Q8N4L2 257 aa16.77■□□□□ 0.28
NCKAP1-204ENST00000477988 SLC4A1APQ9BWU0 796 aaKnown RBP16.76■□□□□ 0.27
NCKAP1-204ENST00000477988 OSCARQ8IYS5 282 aa16.74■□□□□ 0.27
NCKAP1-204ENST00000477988 PITPNM1O00562 1244 aa16.64■□□□□ 0.25
NCKAP1-204ENST00000477988 FXR2P51116 673 aaKnown RBP eCLIP16.62■□□□□ 0.252e-6■□□□□ 8.7
NCKAP1-204ENST00000477988 HAX1O00165 279 aa16.56■□□□□ 0.24
NCKAP1-204ENST00000477988 ZBTB22O15209 634 aa16.46■□□□□ 0.23
NCKAP1-204ENST00000477988 ATXN8OSP0DMR3 200 aa16.4■□□□□ 0.22
NCKAP1-204ENST00000477988 EVX2Q03828 476 aa16.38■□□□□ 0.21
NCKAP1-204ENST00000477988 SPDYE2BA6NHP3 402 aa16.35■□□□□ 0.21
NCKAP1-204ENST00000477988 SPDYE6P0CI01 402 aa16.35■□□□□ 0.21
NCKAP1-204ENST00000477988 SPDYE2Q495Y8 402 aa16.35■□□□□ 0.21
NCKAP1-204ENST00000477988 FBLN2P98095 1184 aa16.25■□□□□ 0.19
NCKAP1-204ENST00000477988 PRKAR2AP13861 404 aaKnown RBP16.19■□□□□ 0.18
NCKAP1-204ENST00000477988 SPDYE1Q8NFV5 336 aaPredicted RBP16.16■□□□□ 0.18
NCKAP1-204ENST00000477988 MKRN4PQ13434 485 aaPredicted RBP16.15■□□□□ 0.18
NCKAP1-204ENST00000477988 CLEC11AQ9Y240 323 aa16.13■□□□□ 0.17
NCKAP1-204ENST00000477988 C19orf67A6NJJ6 358 aa16.11■□□□□ 0.17
NCKAP1-204ENST00000477988 SSUH2Q9Y2M2 353 aa16.11■□□□□ 0.17
NCKAP1-204ENST00000477988 ZNF692Q9BU19 519 aaPredicted RBP16.05■□□□□ 0.16
NCKAP1-204ENST00000477988 GABBR2O75899 941 aa15.97■□□□□ 0.15
NCKAP1-204ENST00000477988 CHADLQ6NUI6 762 aa15.9■□□□□ 0.14
NCKAP1-204ENST00000477988 LHX8Q68G74 356 aa15.82■□□□□ 0.12
NCKAP1-204ENST00000477988 PRR29P0C7W0 189 aa15.81■□□□□ 0.12
NCKAP1-204ENST00000477988 PABPN1Q86U42 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
NCKAP1-204ENST00000477988 POTEIP0CG38 1075 aa15.66■□□□□ 0.1
NCKAP1-204ENST00000477988 CD44P16070 742 aaKnown RBP15.64■□□□□ 0.09
NCKAP1-204ENST00000477988 FARP1Q9Y4F1 1045 aaPredicted RBP15.63■□□□□ 0.09
NCKAP1-204ENST00000477988 CLCN6P51797 869 aa15.57■□□□□ 0.08
NCKAP1-204ENST00000477988 ZNF579Q8NAF0 562 aaKnown RBP15.41■□□□□ 0.06
NCKAP1-204ENST00000477988 DCBLD2Q96PD2 775 aa15.39■□□□□ 0.05
NCKAP1-204ENST00000477988 CREBZFQ9NS37 354 aa15.36■□□□□ 0.05
NCKAP1-204ENST00000477988 ZRANB1Q9UGI0 708 aa15.34■□□□□ 0.05
NCKAP1-204ENST00000477988 STAG3Q9UJ98 1225 aa15.28■□□□□ 0.04
NCKAP1-204ENST00000477988 CSRNP3Q8WYN3 585 aa15.27■□□□□ 0.04
NCKAP1-204ENST00000477988 GALR2O43603 387 aaPredicted RBP15.25■□□□□ 0.03
NCKAP1-204ENST00000477988 OTUD5Q96G74 571 aa15.15■□□□□ 0.02
NCKAP1-204ENST00000477988 POTEB2H3BUK9 544 aa15.13■□□□□ 0.01
NCKAP1-204ENST00000477988 PLSCR2Q9NRY7 297 aa15.13■□□□□ 0.01
NCKAP1-204ENST00000477988 SPDYE4A6NLX3 237 aa15.09■□□□□ 0.01
NCKAP1-204ENST00000477988 PHF12Q96QT6 1004 aa15.09■□□□□ 0.01
NCKAP1-204ENST00000477988 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
NCKAP1-204ENST00000477988 MNX1P50219 401 aaPredicted RBP15.06■□□□□ 0
NCKAP1-204ENST00000477988 NPM1P06748 294 aaKnown RBP eCLIP15.01□□□□□ -0.01
NCKAP1-204ENST00000477988 PELP1Q8IZL8 1130 aaKnown RBP15.01□□□□□ -0.01
NCKAP1-204ENST00000477988 ASTLQ6HA08 431 aaPredicted RBP14.92□□□□□ -0.02
NCKAP1-204ENST00000477988 POTEMA6NI47 508 aa14.91□□□□□ -0.02
NCKAP1-204ENST00000477988 MS4A3Q96HJ5 214 aa14.89□□□□□ -0.03
NCKAP1-204ENST00000477988 ATMINO43313 823 aaPredicted RBP14.86□□□□□ -0.03
NCKAP1-204ENST00000477988 METRNQ9UJH8 293 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms