RNA–Protein interactions for RNA: ENST00000477763.1

SMNDC1-205, Transcript of survival motor neuron domain containing 1, humanhuman

TSL 2

Gene SMNDC1, Length 778 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-205ENST00000477763 AEBP2Q6ZN18 517 aaPredicted RBP25.67■■□□□ 1.7
SMNDC1-205ENST00000477763 CHIC1Q5VXU3 224 aa24.33■■□□□ 1.49
SMNDC1-205ENST00000477763 SENP3Q9H4L4 574 aaPredicted RBP21.78■■□□□ 1.08
SMNDC1-205ENST00000477763 PHF23Q9BUL5 403 aaPredicted RBP21.55■■□□□ 1.04
SMNDC1-205ENST00000477763 FOXD1Q16676 465 aa20.37■□□□□ 0.85
SMNDC1-205ENST00000477763 PLPPR3Q6T4P5 718 aa19.41■□□□□ 0.7
SMNDC1-205ENST00000477763 PPP6R1Q9UPN7 881 aa19.11■□□□□ 0.65
SMNDC1-205ENST00000477763 ADRA2BP18089 450 aa19.01■□□□□ 0.63
SMNDC1-205ENST00000477763 PIAS4Q8N2W9 510 aaPredicted RBP18.98■□□□□ 0.63
SMNDC1-205ENST00000477763 MSH5O43196 834 aa18.97■□□□□ 0.63
SMNDC1-205ENST00000477763 POTEDQ86YR6 584 aa18.57■□□□□ 0.56
SMNDC1-205ENST00000477763 MAPK8IP2Q13387 824 aaPredicted RBP17.49■□□□□ 0.39
SMNDC1-205ENST00000477763 DMRT2Q9Y5R5 561 aa17.31■□□□□ 0.36
SMNDC1-205ENST00000477763 SCAF1Q9H7N4 1312 aaKnown RBP17.27■□□□□ 0.36
SMNDC1-205ENST00000477763 PPP4R3CPQ6ZMV5 832 aa17.08■□□□□ 0.32
SMNDC1-205ENST00000477763 HOXD11P31277 338 aaPredicted RBP16.69■□□□□ 0.26
SMNDC1-205ENST00000477763 CNKSR2Q8WXI2 1034 aa16.69■□□□□ 0.26
SMNDC1-205ENST00000477763 KCNA4P22459 653 aa16.68■□□□□ 0.26
SMNDC1-205ENST00000477763 NCBP3Q53F19 620 aaKnown RBP16.68■□□□□ 0.26
SMNDC1-205ENST00000477763 DCAF8L1A6NGE4 600 aa16.54■□□□□ 0.24
SMNDC1-205ENST00000477763 RNF216Q9NWF9 866 aaPredicted RBP16.54■□□□□ 0.24
SMNDC1-205ENST00000477763 NPM3O75607 178 aaKnown RBP16.39■□□□□ 0.21
SMNDC1-205ENST00000477763 CACNB1Q02641 598 aaPredicted RBP16.28■□□□□ 0.2
SMNDC1-205ENST00000477763 RNF39Q9H2S5 420 aa16.24■□□□□ 0.19
SMNDC1-205ENST00000477763 DNAJC5BQ9UF47 199 aa16.07■□□□□ 0.16
SMNDC1-205ENST00000477763 C1QBPQ07021 282 aaKnown RBP15.96■□□□□ 0.15
SMNDC1-205ENST00000477763 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
SMNDC1-205ENST00000477763 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.84■□□□□ 0.136e-10■□□□□ 10
SMNDC1-205ENST00000477763 U3KPZ7 1027 aaPredicted RBP15.58■□□□□ 0.08
SMNDC1-205ENST00000477763 SLC4A2P04920 1241 aa15.48■□□□□ 0.07
SMNDC1-205ENST00000477763 EHMT2Q96KQ7 1210 aa15.41■□□□□ 0.06
SMNDC1-205ENST00000477763 FOXD4L1Q9NU39 408 aa15.39■□□□□ 0.05
SMNDC1-205ENST00000477763 SPINK5Q9NQ38 1064 aaPredicted RBP15.36■□□□□ 0.05
SMNDC1-205ENST00000477763 ZBTB22O15209 634 aa15.34■□□□□ 0.05
SMNDC1-205ENST00000477763 CSRNP3Q8WYN3 585 aa15.29■□□□□ 0.04
SMNDC1-205ENST00000477763 CAPN15O75808 1086 aa15.26■□□□□ 0.03
SMNDC1-205ENST00000477763 DSG3P32926 999 aa15.23■□□□□ 0.03
SMNDC1-205ENST00000477763 MYCNP04198 464 aaPredicted RBP15.18■□□□□ 0.02
SMNDC1-205ENST00000477763 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.07■□□□□ 0
SMNDC1-205ENST00000477763 HNRNPUL2Q1KMD3 747 aaKnown RBP15.07■□□□□ 0
SMNDC1-205ENST00000477763 TRHP20396 242 aaPredicted RBP15.04■□□□□ -0
SMNDC1-205ENST00000477763 APLP2Q06481 763 aa15□□□□□ -0.01
SMNDC1-205ENST00000477763 SAMD1Q6SPF0 538 aaPredicted RBP15□□□□□ -0.01
SMNDC1-205ENST00000477763 ZNF219Q9P2Y4 722 aaPredicted RBP14.97□□□□□ -0.01
SMNDC1-205ENST00000477763 ABCB7O75027 752 aa14.95□□□□□ -0.02
SMNDC1-205ENST00000477763 ATXN8OSP0DMR3 200 aa14.91□□□□□ -0.02
SMNDC1-205ENST00000477763 ATF5Q9Y2D1 282 aaPredicted RBP14.7□□□□□ -0.06
SMNDC1-205ENST00000477763 POLA2Q14181 598 aa14.66□□□□□ -0.06
SMNDC1-205ENST00000477763 POTEHQ6S545 545 aa14.52□□□□□ -0.09
SMNDC1-205ENST00000477763 RBM42Q9BTD8 480 aaKnown RBP14.43□□□□□ -0.1
SMNDC1-205ENST00000477763 ZBTB12Q9Y330 459 aaPredicted RBP14.27□□□□□ -0.13
SMNDC1-205ENST00000477763 OSCARQ8IYS5 282 aa14.18□□□□□ -0.14
SMNDC1-205ENST00000477763 CHRDL2Q6WN34 429 aa14.17□□□□□ -0.14
SMNDC1-205ENST00000477763 FBLN2P98095 1184 aa14.15□□□□□ -0.14
SMNDC1-205ENST00000477763 AKT1S1Q96B36 256 aa14.15□□□□□ -0.14
SMNDC1-205ENST00000477763 MKRN4PQ13434 485 aaPredicted RBP14.09□□□□□ -0.15
SMNDC1-205ENST00000477763 REM2Q8IYK8 340 aaPredicted RBP14.05□□□□□ -0.16
SMNDC1-205ENST00000477763 PITPNM1O00562 1244 aa13.9□□□□□ -0.18
SMNDC1-205ENST00000477763 SPDYE2BA6NHP3 402 aa13.88□□□□□ -0.19
SMNDC1-205ENST00000477763 SPDYE6P0CI01 402 aa13.88□□□□□ -0.19
SMNDC1-205ENST00000477763 SPDYE2Q495Y8 402 aa13.88□□□□□ -0.19
SMNDC1-205ENST00000477763 PIP4P2Q8N4L2 257 aa13.86□□□□□ -0.19
SMNDC1-205ENST00000477763 FKBP8Q14318 412 aa13.8□□□□□ -0.2
SMNDC1-205ENST00000477763 SPDYE4A6NLX3 237 aa13.79□□□□□ -0.2
SMNDC1-205ENST00000477763 FXR2P51116 673 aaKnown RBP eCLIP13.79□□□□□ -0.2
SMNDC1-205ENST00000477763 SSUH2Q9Y2M2 353 aa13.74□□□□□ -0.21
SMNDC1-205ENST00000477763 ZNF692Q9BU19 519 aaPredicted RBP13.73□□□□□ -0.21
SMNDC1-205ENST00000477763 PROM2Q8N271 834 aa13.63□□□□□ -0.23
SMNDC1-205ENST00000477763 SPDYE1Q8NFV5 336 aaPredicted RBP13.62□□□□□ -0.23
SMNDC1-205ENST00000477763 SP7Q8TDD2 431 aaPredicted RBP13.61□□□□□ -0.23
SMNDC1-205ENST00000477763 CLEC11AQ9Y240 323 aa13.61□□□□□ -0.23
SMNDC1-205ENST00000477763 HAX1O00165 279 aa13.56□□□□□ -0.24
SMNDC1-205ENST00000477763 PABPN1Q86U42 306 aaKnown RBP eCLIP13.54□□□□□ -0.24
SMNDC1-205ENST00000477763 PRKAR2AP13861 404 aaKnown RBP13.52□□□□□ -0.25
SMNDC1-205ENST00000477763 EVX2Q03828 476 aa13.51□□□□□ -0.25
SMNDC1-205ENST00000477763 CHADLQ6NUI6 762 aa13.41□□□□□ -0.26
SMNDC1-205ENST00000477763 PRR29P0C7W0 189 aa13.39□□□□□ -0.27
SMNDC1-205ENST00000477763 STAG3Q9UJ98 1225 aa13.39□□□□□ -0.27
SMNDC1-205ENST00000477763 FBXO3Q9UK99 471 aa13.38□□□□□ -0.27
SMNDC1-205ENST00000477763 C19orf67A6NJJ6 358 aa13.34□□□□□ -0.27
SMNDC1-205ENST00000477763 FARP1Q9Y4F1 1045 aaPredicted RBP13.19□□□□□ -0.3
SMNDC1-205ENST00000477763 VASPP50552 380 aaPredicted RBP13.16□□□□□ -0.3
SMNDC1-205ENST00000477763 GABBR2O75899 941 aa13.14□□□□□ -0.31
SMNDC1-205ENST00000477763 CREBZFQ9NS37 354 aa13.12□□□□□ -0.31
SMNDC1-205ENST00000477763 CD44P16070 742 aaKnown RBP13.08□□□□□ -0.32
SMNDC1-205ENST00000477763 MIER1Q8N108 512 aa13.06□□□□□ -0.32
SMNDC1-205ENST00000477763 PLEKHG5O94827 1062 aa13.05□□□□□ -0.32
SMNDC1-205ENST00000477763 PLCD3Q8N3E9 789 aa13.05□□□□□ -0.32
SMNDC1-205ENST00000477763 ZBTB47Q9UFB7 747 aaPredicted RBP12.98□□□□□ -0.33
SMNDC1-205ENST00000477763 IFNLR1Q8IU57 520 aaPredicted RBP12.96□□□□□ -0.33
SMNDC1-205ENST00000477763 MNX1P50219 401 aaPredicted RBP12.93□□□□□ -0.34
SMNDC1-205ENST00000477763 POTEIP0CG38 1075 aa12.92□□□□□ -0.34
SMNDC1-205ENST00000477763 ZRANB1Q9UGI0 708 aa12.91□□□□□ -0.34
SMNDC1-205ENST00000477763 KLHL34Q8N239 644 aa12.89□□□□□ -0.35
SMNDC1-205ENST00000477763 ZNF579Q8NAF0 562 aaKnown RBP12.89□□□□□ -0.35
SMNDC1-205ENST00000477763 NPM1P06748 294 aaKnown RBP eCLIP12.85□□□□□ -0.35
SMNDC1-205ENST00000477763 CLCN6P51797 869 aa12.85□□□□□ -0.35
SMNDC1-205ENST00000477763 SPOCK2Q92563 424 aa12.83□□□□□ -0.36
SMNDC1-205ENST00000477763 LHX8Q68G74 356 aa12.78□□□□□ -0.36
SMNDC1-205ENST00000477763 GALR2O43603 387 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms