RNA–Protein interactions for RNA: ENST00000477558.1

VPS45-207, Transcript of vacuolar protein sorting 45 homolog, humanhuman

TSL 2

Gene VPS45, Length 1,425 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS45-207ENST00000477558 AEBP2Q6ZN18 517 aaPredicted RBP23.26■■□□□ 1.31
VPS45-207ENST00000477558 CHIC1Q5VXU3 224 aa21.91■■□□□ 1.1
VPS45-207ENST00000477558 SENP3Q9H4L4 574 aaPredicted RBP19.92■□□□□ 0.78
VPS45-207ENST00000477558 PHF23Q9BUL5 403 aaPredicted RBP19.6■□□□□ 0.73
VPS45-207ENST00000477558 FOXD1Q16676 465 aa18.56■□□□□ 0.56
VPS45-207ENST00000477558 POTEDQ86YR6 584 aa17.8■□□□□ 0.44
VPS45-207ENST00000477558 PLPPR3Q6T4P5 718 aa17.51■□□□□ 0.39
VPS45-207ENST00000477558 MSH5O43196 834 aa17.5■□□□□ 0.39
VPS45-207ENST00000477558 PIAS4Q8N2W9 510 aaPredicted RBP17.3■□□□□ 0.36
VPS45-207ENST00000477558 PPP6R1Q9UPN7 881 aa17.17■□□□□ 0.34
VPS45-207ENST00000477558 ADRA2BP18089 450 aa17.1■□□□□ 0.33
VPS45-207ENST00000477558 MAPK8IP2Q13387 824 aaPredicted RBP15.77■□□□□ 0.11
VPS45-207ENST00000477558 DMRT2Q9Y5R5 561 aa15.76■□□□□ 0.11
VPS45-207ENST00000477558 SCAF1Q9H7N4 1312 aaKnown RBP15.71■□□□□ 0.11
VPS45-207ENST00000477558 PPP4R3CPQ6ZMV5 832 aa15.5■□□□□ 0.07
VPS45-207ENST00000477558 KCNA4P22459 653 aa15.31■□□□□ 0.04
VPS45-207ENST00000477558 CACNB1Q02641 598 aaPredicted RBP15.13■□□□□ 0.01
VPS45-207ENST00000477558 DCAF8L1A6NGE4 600 aa15.1■□□□□ 0.01
VPS45-207ENST00000477558 HOXD11P31277 338 aaPredicted RBP15.09■□□□□ 0.01
VPS45-207ENST00000477558 NCBP3Q53F19 620 aaKnown RBP15.06■□□□□ 0
VPS45-207ENST00000477558 CNKSR2Q8WXI2 1034 aa15□□□□□ -0.01
VPS45-207ENST00000477558 RNF216Q9NWF9 866 aaPredicted RBP14.92□□□□□ -0.02
VPS45-207ENST00000477558 NPM3O75607 178 aaKnown RBP14.91□□□□□ -0.02
VPS45-207ENST00000477558 RNF39Q9H2S5 420 aa14.89□□□□□ -0.03
VPS45-207ENST00000477558 C1QBPQ07021 282 aaKnown RBP14.67□□□□□ -0.06
VPS45-207ENST00000477558 DNAJC5BQ9UF47 199 aa14.66□□□□□ -0.06
VPS45-207ENST00000477558 SLC4A1APQ9BWU0 796 aaKnown RBP14.57□□□□□ -0.08
VPS45-207ENST00000477558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.37□□□□□ -0.11
VPS45-207ENST00000477558 EHMT2Q96KQ7 1210 aa14.35□□□□□ -0.11
VPS45-207ENST00000477558 CSRNP3Q8WYN3 585 aa14.14□□□□□ -0.15
VPS45-207ENST00000477558 ZBTB22O15209 634 aa14.12□□□□□ -0.15
VPS45-207ENST00000477558 SLC4A2P04920 1241 aa14.07□□□□□ -0.16
VPS45-207ENST00000477558 U3KPZ7 1027 aaPredicted RBP14.04□□□□□ -0.16
VPS45-207ENST00000477558 FOXD4L1Q9NU39 408 aa13.99□□□□□ -0.17
VPS45-207ENST00000477558 CAPN15O75808 1086 aa13.89□□□□□ -0.19
VPS45-207ENST00000477558 SPINK5Q9NQ38 1064 aaPredicted RBP13.89□□□□□ -0.19
VPS45-207ENST00000477558 DSG3P32926 999 aa13.86□□□□□ -0.19
VPS45-207ENST00000477558 MYCNP04198 464 aaPredicted RBP13.72□□□□□ -0.21
VPS45-207ENST00000477558 POTEHQ6S545 545 aa13.72□□□□□ -0.21
VPS45-207ENST00000477558 APLP2Q06481 763 aa13.69□□□□□ -0.22
VPS45-207ENST00000477558 TRHP20396 242 aaPredicted RBP13.62□□□□□ -0.23
VPS45-207ENST00000477558 ZNF219Q9P2Y4 722 aaPredicted RBP13.62□□□□□ -0.23
VPS45-207ENST00000477558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.61□□□□□ -0.23
VPS45-207ENST00000477558 HNRNPUL2Q1KMD3 747 aaKnown RBP13.61□□□□□ -0.23
VPS45-207ENST00000477558 ABCB7O75027 752 aa13.54□□□□□ -0.24
VPS45-207ENST00000477558 SAMD1Q6SPF0 538 aaPredicted RBP13.51□□□□□ -0.25
VPS45-207ENST00000477558 ATXN8OSP0DMR3 200 aa13.47□□□□□ -0.25
VPS45-207ENST00000477558 ATF5Q9Y2D1 282 aaPredicted RBP13.46□□□□□ -0.26
VPS45-207ENST00000477558 RBM42Q9BTD8 480 aaKnown RBP13.28□□□□□ -0.28
VPS45-207ENST00000477558 POLA2Q14181 598 aa13.2□□□□□ -0.3
VPS45-207ENST00000477558 CHRDL2Q6WN34 429 aa13.04□□□□□ -0.32
VPS45-207ENST00000477558 ZBTB12Q9Y330 459 aaPredicted RBP12.96□□□□□ -0.33
VPS45-207ENST00000477558 AKT1S1Q96B36 256 aa12.9□□□□□ -0.34
VPS45-207ENST00000477558 MKRN4PQ13434 485 aaPredicted RBP12.84□□□□□ -0.35
VPS45-207ENST00000477558 OSCARQ8IYS5 282 aa12.79□□□□□ -0.36
VPS45-207ENST00000477558 FBLN2P98095 1184 aa12.76□□□□□ -0.37
VPS45-207ENST00000477558 REM2Q8IYK8 340 aaPredicted RBP12.76□□□□□ -0.37
VPS45-207ENST00000477558 NISCHQ9Y2I1 1504 aa12.75□□□□□ -0.37
VPS45-207ENST00000477558 FKBP8Q14318 412 aa12.74□□□□□ -0.37
VPS45-207ENST00000477558 PIP4P2Q8N4L2 257 aa12.67□□□□□ -0.38
VPS45-207ENST00000477558 SP7Q8TDD2 431 aaPredicted RBP12.67□□□□□ -0.38
VPS45-207ENST00000477558 PITPNM1O00562 1244 aa12.63□□□□□ -0.39
VPS45-207ENST00000477558 SPDYE4A6NLX3 237 aa12.58□□□□□ -0.4
VPS45-207ENST00000477558 FXR2P51116 673 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS45-207ENST00000477558 SPDYE2BA6NHP3 402 aa12.52□□□□□ -0.41
VPS45-207ENST00000477558 SPDYE6P0CI01 402 aa12.52□□□□□ -0.41
VPS45-207ENST00000477558 SPDYE2Q495Y8 402 aa12.52□□□□□ -0.41
VPS45-207ENST00000477558 HAX1O00165 279 aa12.5□□□□□ -0.41
VPS45-207ENST00000477558 ZNF692Q9BU19 519 aaPredicted RBP12.45□□□□□ -0.42
VPS45-207ENST00000477558 PROM2Q8N271 834 aa12.37□□□□□ -0.43
VPS45-207ENST00000477558 SPDYE1Q8NFV5 336 aaPredicted RBP12.37□□□□□ -0.43
VPS45-207ENST00000477558 SSUH2Q9Y2M2 353 aa12.36□□□□□ -0.43
VPS45-207ENST00000477558 CLEC11AQ9Y240 323 aa12.32□□□□□ -0.44
VPS45-207ENST00000477558 PRKAR2AP13861 404 aaKnown RBP12.3□□□□□ -0.44
VPS45-207ENST00000477558 EVX2Q03828 476 aa12.3□□□□□ -0.44
VPS45-207ENST00000477558 PABPN1Q86U42 306 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS45-207ENST00000477558 C19orf67A6NJJ6 358 aa12.18□□□□□ -0.46
VPS45-207ENST00000477558 FBXO3Q9UK99 471 aa12.18□□□□□ -0.46
VPS45-207ENST00000477558 PRR29P0C7W0 189 aa12.11□□□□□ -0.47
VPS45-207ENST00000477558 CHADLQ6NUI6 762 aa12.1□□□□□ -0.47
VPS45-207ENST00000477558 GABBR2O75899 941 aa12.04□□□□□ -0.48
VPS45-207ENST00000477558 VASPP50552 380 aaPredicted RBP12.04□□□□□ -0.48
VPS45-207ENST00000477558 STAG3Q9UJ98 1225 aa12.04□□□□□ -0.48
VPS45-207ENST00000477558 IFNLR1Q8IU57 520 aaPredicted RBP11.94□□□□□ -0.5
VPS45-207ENST00000477558 MIER1Q8N108 512 aa11.93□□□□□ -0.5
VPS45-207ENST00000477558 FARP1Q9Y4F1 1045 aaPredicted RBP11.92□□□□□ -0.5
VPS45-207ENST00000477558 CD44P16070 742 aaKnown RBP11.9□□□□□ -0.5
VPS45-207ENST00000477558 PLCD3Q8N3E9 789 aa11.9□□□□□ -0.5
VPS45-207ENST00000477558 LHX8Q68G74 356 aa11.87□□□□□ -0.51
VPS45-207ENST00000477558 RTN4Q9NQC3 1192 aaKnown RBP11.85□□□□□ -0.51
VPS45-207ENST00000477558 CLCN6P51797 869 aa11.84□□□□□ -0.51
VPS45-207ENST00000477558 PLSCR2Q9NRY7 297 aa11.84□□□□□ -0.51
VPS45-207ENST00000477558 KLHL34Q8N239 644 aa11.83□□□□□ -0.52
VPS45-207ENST00000477558 CREBZFQ9NS37 354 aa11.82□□□□□ -0.52
VPS45-207ENST00000477558 AMER1Q5JTC6 1135 aaPredicted RBP11.78□□□□□ -0.52
VPS45-207ENST00000477558 PLEKHG5O94827 1062 aa11.77□□□□□ -0.52
VPS45-207ENST00000477558 POTEIP0CG38 1075 aa11.77□□□□□ -0.52
VPS45-207ENST00000477558 SPOCK2Q92563 424 aa11.73□□□□□ -0.53
VPS45-207ENST00000477558 ZNF579Q8NAF0 562 aaKnown RBP11.72□□□□□ -0.53
VPS45-207ENST00000477558 MNX1P50219 401 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 162 ms