RNA–Protein interactions for RNA: ENST00000477289.1

NSMCE4A-208, Transcript of NSE4 homolog A, SMC5-SMC6 complex component, humanhuman

TSL 2

Gene NSMCE4A, Length 643 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSMCE4A-208ENST00000477289 AEBP2Q6ZN18 517 aaPredicted RBP24.42■■□□□ 1.5
NSMCE4A-208ENST00000477289 CHIC1Q5VXU3 224 aa22.9■■□□□ 1.26
NSMCE4A-208ENST00000477289 SENP3Q9H4L4 574 aaPredicted RBP20.86■□□□□ 0.93
NSMCE4A-208ENST00000477289 PHF23Q9BUL5 403 aaPredicted RBP20.56■□□□□ 0.88
NSMCE4A-208ENST00000477289 FOXD1Q16676 465 aa19.5■□□□□ 0.71
NSMCE4A-208ENST00000477289 POTEDQ86YR6 584 aa18.41■□□□□ 0.54
NSMCE4A-208ENST00000477289 MSH5O43196 834 aa18.34■□□□□ 0.53
NSMCE4A-208ENST00000477289 PLPPR3Q6T4P5 718 aa18.16■□□□□ 0.5
NSMCE4A-208ENST00000477289 PIAS4Q8N2W9 510 aaPredicted RBP18.14■□□□□ 0.49
NSMCE4A-208ENST00000477289 PPP6R1Q9UPN7 881 aa18.01■□□□□ 0.47
NSMCE4A-208ENST00000477289 ADRA2BP18089 450 aa17.93■□□□□ 0.46
NSMCE4A-208ENST00000477289 MAPK8IP2Q13387 824 aaPredicted RBP16.57■□□□□ 0.24
NSMCE4A-208ENST00000477289 DMRT2Q9Y5R5 561 aa16.49■□□□□ 0.23
NSMCE4A-208ENST00000477289 SCAF1Q9H7N4 1312 aaKnown RBP16.4■□□□□ 0.22
NSMCE4A-208ENST00000477289 CACNB1Q02641 598 aaPredicted RBP15.93■□□□□ 0.14
NSMCE4A-208ENST00000477289 PPP4R3CPQ6ZMV5 832 aa15.89■□□□□ 0.13
NSMCE4A-208ENST00000477289 DCAF8L1A6NGE4 600 aa15.85■□□□□ 0.13
NSMCE4A-208ENST00000477289 HOXD11P31277 338 aaPredicted RBP15.78■□□□□ 0.12
NSMCE4A-208ENST00000477289 CNKSR2Q8WXI2 1034 aa15.65■□□□□ 0.1
NSMCE4A-208ENST00000477289 RNF39Q9H2S5 420 aa15.63■□□□□ 0.09
NSMCE4A-208ENST00000477289 RNF216Q9NWF9 866 aaPredicted RBP15.58■□□□□ 0.08
NSMCE4A-208ENST00000477289 C1QBPQ07021 282 aaKnown RBP15.37■□□□□ 0.05
NSMCE4A-208ENST00000477289 DNAJC5BQ9UF47 199 aa15.28■□□□□ 0.04
NSMCE4A-208ENST00000477289 NCBP3Q53F19 620 aaKnown RBP15.17■□□□□ 0.02
NSMCE4A-208ENST00000477289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.03■□□□□ -03e-13■■■■■ 37.8
NSMCE4A-208ENST00000477289 NPM3O75607 178 aaKnown RBP14.97□□□□□ -0.01
NSMCE4A-208ENST00000477289 U3KPZ7 1027 aaPredicted RBP14.69□□□□□ -0.06
NSMCE4A-208ENST00000477289 SPINK5Q9NQ38 1064 aaPredicted RBP14.58□□□□□ -0.08
NSMCE4A-208ENST00000477289 CAPN15O75808 1086 aa14.56□□□□□ -0.08
NSMCE4A-208ENST00000477289 DSG3P32926 999 aa14.54□□□□□ -0.08
NSMCE4A-208ENST00000477289 KCNA4P22459 653 aa14.42□□□□□ -0.1
NSMCE4A-208ENST00000477289 SLC4A2P04920 1241 aa14.38□□□□□ -0.11
NSMCE4A-208ENST00000477289 POTEHQ6S545 545 aa14.37□□□□□ -0.11
NSMCE4A-208ENST00000477289 TRHP20396 242 aaPredicted RBP14.26□□□□□ -0.13
NSMCE4A-208ENST00000477289 APLP2Q06481 763 aa14.23□□□□□ -0.13
NSMCE4A-208ENST00000477289 ABCB7O75027 752 aa14.21□□□□□ -0.13
NSMCE4A-208ENST00000477289 ZNF219Q9P2Y4 722 aaPredicted RBP14.2□□□□□ -0.14
NSMCE4A-208ENST00000477289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.15□□□□□ -0.14
NSMCE4A-208ENST00000477289 HNRNPUL2Q1KMD3 747 aaKnown RBP14.15□□□□□ -0.14
NSMCE4A-208ENST00000477289 SAMD1Q6SPF0 538 aaPredicted RBP14.06□□□□□ -0.16
NSMCE4A-208ENST00000477289 RBM42Q9BTD8 480 aaKnown RBP13.87□□□□□ -0.19
NSMCE4A-208ENST00000477289 MYCNP04198 464 aaPredicted RBP13.84□□□□□ -0.19
NSMCE4A-208ENST00000477289 POLA2Q14181 598 aa13.81□□□□□ -0.2
NSMCE4A-208ENST00000477289 CHRDL2Q6WN34 429 aa13.69□□□□□ -0.22
NSMCE4A-208ENST00000477289 ATF5Q9Y2D1 282 aaPredicted RBP13.57□□□□□ -0.24
NSMCE4A-208ENST00000477289 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
NSMCE4A-208ENST00000477289 FOXD4L1Q9NU39 408 aa13.54□□□□□ -0.24
NSMCE4A-208ENST00000477289 AKT1S1Q96B36 256 aa13.49□□□□□ -0.25
NSMCE4A-208ENST00000477289 ZBTB12Q9Y330 459 aaPredicted RBP13.48□□□□□ -0.25
NSMCE4A-208ENST00000477289 REM2Q8IYK8 340 aaPredicted RBP13.37□□□□□ -0.27
NSMCE4A-208ENST00000477289 OSCARQ8IYS5 282 aa13.37□□□□□ -0.27
NSMCE4A-208ENST00000477289 SP7Q8TDD2 431 aaPredicted RBP13.33□□□□□ -0.28
NSMCE4A-208ENST00000477289 PIP4P2Q8N4L2 257 aa13.31□□□□□ -0.28
NSMCE4A-208ENST00000477289 ZBTB22O15209 634 aa13.26□□□□□ -0.29
NSMCE4A-208ENST00000477289 PITPNM1O00562 1244 aa13.24□□□□□ -0.29
NSMCE4A-208ENST00000477289 FXR2P51116 673 aaKnown RBP eCLIP13.18□□□□□ -0.3
NSMCE4A-208ENST00000477289 HAX1O00165 279 aa13.15□□□□□ -0.3
NSMCE4A-208ENST00000477289 ATXN8OSP0DMR3 200 aa13.15□□□□□ -0.3
NSMCE4A-208ENST00000477289 SPDYE2BA6NHP3 402 aa13.05□□□□□ -0.32
NSMCE4A-208ENST00000477289 SPDYE6P0CI01 402 aa13.05□□□□□ -0.32
NSMCE4A-208ENST00000477289 SPDYE2Q495Y8 402 aa13.05□□□□□ -0.32
NSMCE4A-208ENST00000477289 FBLN2P98095 1184 aa13.03□□□□□ -0.32
NSMCE4A-208ENST00000477289 EVX2Q03828 476 aa12.98□□□□□ -0.33
NSMCE4A-208ENST00000477289 MKRN4PQ13434 485 aaPredicted RBP12.92□□□□□ -0.34
NSMCE4A-208ENST00000477289 CLEC11AQ9Y240 323 aa12.91□□□□□ -0.34
NSMCE4A-208ENST00000477289 PRKAR2AP13861 404 aaKnown RBP12.89□□□□□ -0.35
NSMCE4A-208ENST00000477289 SPDYE1Q8NFV5 336 aaPredicted RBP12.89□□□□□ -0.35
NSMCE4A-208ENST00000477289 ZNF692Q9BU19 519 aaPredicted RBP12.86□□□□□ -0.35
NSMCE4A-208ENST00000477289 SSUH2Q9Y2M2 353 aa12.85□□□□□ -0.35
NSMCE4A-208ENST00000477289 C19orf67A6NJJ6 358 aa12.77□□□□□ -0.37
NSMCE4A-208ENST00000477289 CSRNP3Q8WYN3 585 aa12.76□□□□□ -0.37
NSMCE4A-208ENST00000477289 CHADLQ6NUI6 762 aa12.7□□□□□ -0.38
NSMCE4A-208ENST00000477289 GABBR2O75899 941 aa12.66□□□□□ -0.38
NSMCE4A-208ENST00000477289 PABPN1Q86U42 306 aaKnown RBP eCLIP12.66□□□□□ -0.38
NSMCE4A-208ENST00000477289 PRR29P0C7W0 189 aa12.65□□□□□ -0.38
NSMCE4A-208ENST00000477289 EHMT2Q96KQ7 1210 aa12.64□□□□□ -0.39
NSMCE4A-208ENST00000477289 LHX8Q68G74 356 aa12.51□□□□□ -0.41
NSMCE4A-208ENST00000477289 CD44P16070 742 aaKnown RBP12.46□□□□□ -0.41
NSMCE4A-208ENST00000477289 FARP1Q9Y4F1 1045 aaPredicted RBP12.46□□□□□ -0.41
NSMCE4A-208ENST00000477289 POTEIP0CG38 1075 aa12.39□□□□□ -0.43
NSMCE4A-208ENST00000477289 CLCN6P51797 869 aa12.34□□□□□ -0.43
NSMCE4A-208ENST00000477289 CREBZFQ9NS37 354 aa12.26□□□□□ -0.45
NSMCE4A-208ENST00000477289 ZNF579Q8NAF0 562 aaKnown RBP12.25□□□□□ -0.45
NSMCE4A-208ENST00000477289 DCBLD2Q96PD2 775 aa12.25□□□□□ -0.45
NSMCE4A-208ENST00000477289 ZRANB1Q9UGI0 708 aa12.25□□□□□ -0.45
NSMCE4A-208ENST00000477289 STAG3Q9UJ98 1225 aa12.24□□□□□ -0.45
NSMCE4A-208ENST00000477289 SPDYE4A6NLX3 237 aa12.16□□□□□ -0.46
NSMCE4A-208ENST00000477289 GALR2O43603 387 aaPredicted RBP12.14□□□□□ -0.47
NSMCE4A-208ENST00000477289 PAK3O75914 559 aaPredicted RBP12.07□□□□□ -0.48
NSMCE4A-208ENST00000477289 PHF12Q96QT6 1004 aa12.05□□□□□ -0.48
NSMCE4A-208ENST00000477289 NPM1P06748 294 aaKnown RBP eCLIP12.02□□□□□ -0.49
NSMCE4A-208ENST00000477289 MNX1P50219 401 aaPredicted RBP12.02□□□□□ -0.49
NSMCE4A-208ENST00000477289 POTEB2H3BUK9 544 aa11.99□□□□□ -0.49
NSMCE4A-208ENST00000477289 OTUD5Q96G74 571 aa11.99□□□□□ -0.49
NSMCE4A-208ENST00000477289 PLSCR2Q9NRY7 297 aa11.95□□□□□ -0.5
NSMCE4A-208ENST00000477289 PELP1Q8IZL8 1130 aaKnown RBP11.93□□□□□ -0.5
NSMCE4A-208ENST00000477289 MS4A3Q96HJ5 214 aa11.88□□□□□ -0.51
NSMCE4A-208ENST00000477289 ASTLQ6HA08 431 aaPredicted RBP11.86□□□□□ -0.51
NSMCE4A-208ENST00000477289 ATMINO43313 823 aaPredicted RBP11.83□□□□□ -0.52
NSMCE4A-208ENST00000477289 METRNQ9UJH8 293 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms