RNA–Protein interactions for RNA: ENST00000476074.5

PCDH15-222, Transcript of protocadherin related 15, human

TSL 3

Gene PCDH15, Length 754 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH15-222	ENST00000476074	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.88	■■□□□ 1.09
PCDH15-222	ENST00000476074	CHIC1	Q5VXU3	224 aa		20.59	■□□□□ 0.89
PCDH15-222	ENST00000476074	SENP3	Q9H4L4	574 aa	Predicted RBP	18.66	■□□□□ 0.58
PCDH15-222	ENST00000476074	PHF23	Q9BUL5	403 aa	Predicted RBP	18.38	■□□□□ 0.53
PCDH15-222	ENST00000476074	FOXD1	Q16676	465 aa		17.43	■□□□□ 0.38
PCDH15-222	ENST00000476074	MSH5	O43196	834 aa		16.38	■□□□□ 0.21
PCDH15-222	ENST00000476074	POTED	Q86YR6	584 aa		16.32	■□□□□ 0.2
PCDH15-222	ENST00000476074	PLPPR3	Q6T4P5	718 aa		16.31	■□□□□ 0.2
PCDH15-222	ENST00000476074	PIAS4	Q8N2W9	510 aa	Predicted RBP	16.16	■□□□□ 0.18
PCDH15-222	ENST00000476074	PPP6R1	Q9UPN7	881 aa		16.14	■□□□□ 0.17
PCDH15-222	ENST00000476074	ADRA2B	P18089	450 aa		16.02	■□□□□ 0.16
PCDH15-222	ENST00000476074	DMRT2	Q9Y5R5	561 aa		14.8	□□□□□ -0.04
PCDH15-222	ENST00000476074	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.78	□□□□□ -0.04
PCDH15-222	ENST00000476074	SCAF1	Q9H7N4	1312 aa	Known RBP	14.66	□□□□□ -0.06
PCDH15-222	ENST00000476074	KCNA4	P22459	653 aa		14.46	□□□□□ -0.09
PCDH15-222	ENST00000476074	PPP4R3CP	Q6ZMV5	832 aa		14.32	□□□□□ -0.12
PCDH15-222	ENST00000476074	HOXD11	P31277	338 aa	Predicted RBP	14.22	□□□□□ -0.13
PCDH15-222	ENST00000476074	NCBP3	Q53F19	620 aa	Known RBP	14.12	□□□□□ -0.15
PCDH15-222	ENST00000476074	CACNB1	Q02641	598 aa	Predicted RBP	14.09	□□□□□ -0.15
PCDH15-222	ENST00000476074	CNKSR2	Q8WXI2	1034 aa		14.07	□□□□□ -0.16
PCDH15-222	ENST00000476074	RNF216	Q9NWF9	866 aa	Predicted RBP	14.02	□□□□□ -0.17
PCDH15-222	ENST00000476074	RNF39	Q9H2S5	420 aa		13.99	□□□□□ -0.17
PCDH15-222	ENST00000476074	DCAF8L1	A6NGE4	600 aa		13.98	□□□□□ -0.17
PCDH15-222	ENST00000476074	EHMT2	Q96KQ7	1210 aa		13.91	□□□□□ -0.18
PCDH15-222	ENST00000476074	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.87	□□□□□ -0.19
PCDH15-222	ENST00000476074	NPM3	O75607	178 aa	Known RBP	13.86	□□□□□ -0.19
PCDH15-222	ENST00000476074	DNAJC5B	Q9UF47	199 aa		13.86	□□□□□ -0.19
PCDH15-222	ENST00000476074	C1QBP	Q07021	282 aa	Known RBP	13.76	□□□□□ -0.21
PCDH15-222	ENST00000476074	CSRNP3	Q8WYN3	585 aa		13.6	□□□□□ -0.23
PCDH15-222	ENST00000476074	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
PCDH15-222	ENST00000476074	ZBTB22	O15209	634 aa		13.3	□□□□□ -0.28
PCDH15-222	ENST00000476074	FOXD4L1	Q9NU39	408 aa		13.22	□□□□□ -0.29
PCDH15-222	ENST00000476074		U3KPZ7	1027 aa	Predicted RBP	13.18	□□□□□ -0.3
PCDH15-222	ENST00000476074	DSG3	P32926	999 aa		13.02	□□□□□ -0.33
PCDH15-222	ENST00000476074	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13	□□□□□ -0.33
PCDH15-222	ENST00000476074	SLC4A2	P04920	1241 aa		12.98	□□□□□ -0.33
PCDH15-222	ENST00000476074	CAPN15	O75808	1086 aa		12.91	□□□□□ -0.34
PCDH15-222	ENST00000476074	MYCN	P04198	464 aa	Predicted RBP	12.84	□□□□□ -0.35
PCDH15-222	ENST00000476074	ATXN8OS	P0DMR3	200 aa		12.78	□□□□□ -0.36
PCDH15-222	ENST00000476074	APLP2	Q06481	763 aa		12.74	□□□□□ -0.37
PCDH15-222	ENST00000476074	POTEH	Q6S545	545 aa		12.73	□□□□□ -0.37
PCDH15-222	ENST00000476074	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.71	□□□□□ -0.37
PCDH15-222	ENST00000476074	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.7	□□□□□ -0.38
PCDH15-222	ENST00000476074	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.7	□□□□□ -0.38
PCDH15-222	ENST00000476074	TRH	P20396	242 aa	Predicted RBP	12.65	□□□□□ -0.38
PCDH15-222	ENST00000476074	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.62	□□□□□ -0.39
PCDH15-222	ENST00000476074	ABCB7	O75027	752 aa		12.59	□□□□□ -0.39
PCDH15-222	ENST00000476074	RBM42	Q9BTD8	480 aa	Known RBP	12.39	□□□□□ -0.43
PCDH15-222	ENST00000476074	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.39	□□□□□ -0.43
PCDH15-222	ENST00000476074	POLA2	Q14181	598 aa		12.32	□□□□□ -0.44
PCDH15-222	ENST00000476074	FKBP8	Q14318	412 aa		12.25	□□□□□ -0.45
PCDH15-222	ENST00000476074	CHRDL2	Q6WN34	429 aa		12.19	□□□□□ -0.46
PCDH15-222	ENST00000476074	AKT1S1	Q96B36	256 aa		12.09	□□□□□ -0.47
PCDH15-222	ENST00000476074	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.09	□□□□□ -0.47
PCDH15-222	ENST00000476074	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.99	□□□□□ -0.49
PCDH15-222	ENST00000476074	REM2	Q8IYK8	340 aa	Predicted RBP	11.95	□□□□□ -0.5
PCDH15-222	ENST00000476074	OSCAR	Q8IYS5	282 aa		11.93	□□□□□ -0.5
PCDH15-222	ENST00000476074	FBLN2	P98095	1184 aa		11.91	□□□□□ -0.5
PCDH15-222	ENST00000476074	MKRN4P	Q13434	485 aa	Predicted RBP	11.9	□□□□□ -0.5
PCDH15-222	ENST00000476074	RTN4	Q9NQC3	1192 aa	Known RBP	11.9	□□□□□ -0.5
PCDH15-222	ENST00000476074	PIP4P2	Q8N4L2	257 aa		11.87	□□□□□ -0.51
PCDH15-222	ENST00000476074	SPDYE4	A6NLX3	237 aa		11.86	□□□□□ -0.51
PCDH15-222	ENST00000476074	SP7	Q8TDD2	431 aa	Predicted RBP	11.85	□□□□□ -0.51
PCDH15-222	ENST00000476074	PITPNM1	O00562	1244 aa		11.82	□□□□□ -0.52
PCDH15-222	ENST00000476074	FXR2	P51116	673 aa	Known RBP eCLIP	11.82	□□□□□ -0.52
PCDH15-222	ENST00000476074	FBXO3	Q9UK99	471 aa		11.78	□□□□□ -0.52
PCDH15-222	ENST00000476074	PROM2	Q8N271	834 aa		11.77	□□□□□ -0.53
PCDH15-222	ENST00000476074	SPDYE2B	A6NHP3	402 aa		11.73	□□□□□ -0.53
PCDH15-222	ENST00000476074	SPDYE6	P0CI01	402 aa		11.73	□□□□□ -0.53
PCDH15-222	ENST00000476074	SPDYE2	Q495Y8	402 aa		11.73	□□□□□ -0.53
PCDH15-222	ENST00000476074	HAX1	O00165	279 aa		11.61	□□□□□ -0.55
PCDH15-222	ENST00000476074	SSUH2	Q9Y2M2	353 aa		11.59	□□□□□ -0.55
PCDH15-222	ENST00000476074	VASP	P50552	380 aa	Predicted RBP	11.56	□□□□□ -0.56
PCDH15-222	ENST00000476074	EVX2	Q03828	476 aa		11.56	□□□□□ -0.56
PCDH15-222	ENST00000476074	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.53	□□□□□ -0.56
PCDH15-222	ENST00000476074	SLC24A1	O60721	1099 aa		11.5	□□□□□ -0.57
PCDH15-222	ENST00000476074	ZNF692	Q9BU19	519 aa	Predicted RBP	11.49	□□□□□ -0.57
PCDH15-222	ENST00000476074	PRKAR2A	P13861	404 aa	Known RBP	11.47	□□□□□ -0.57
PCDH15-222	ENST00000476074	C19orf67	A6NJJ6	358 aa		11.45	□□□□□ -0.58
PCDH15-222	ENST00000476074	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.42	□□□□□ -0.58
PCDH15-222	ENST00000476074	CLEC11A	Q9Y240	323 aa		11.42	□□□□□ -0.58
PCDH15-222	ENST00000476074	STAG3	Q9UJ98	1225 aa		11.39	□□□□□ -0.59
PCDH15-222	ENST00000476074	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.34	□□□□□ -0.59
PCDH15-222	ENST00000476074	GABBR2	O75899	941 aa		11.27	□□□□□ -0.61
PCDH15-222	ENST00000476074	CHADL	Q6NUI6	762 aa		11.27	□□□□□ -0.61
PCDH15-222	ENST00000476074	PRR29	P0C7W0	189 aa		11.26	□□□□□ -0.61
PCDH15-222	ENST00000476074	KLHL34	Q8N239	644 aa		11.24	□□□□□ -0.61
PCDH15-222	ENST00000476074	SPOCK2	Q92563	424 aa		11.24	□□□□□ -0.61
PCDH15-222	ENST00000476074	PLCD3	Q8N3E9	789 aa		11.22	□□□□□ -0.61
PCDH15-222	ENST00000476074	PKD2	Q13563	968 aa		11.21	□□□□□ -0.61
PCDH15-222	ENST00000476074	MIER1	Q8N108	512 aa		11.19	□□□□□ -0.62
PCDH15-222	ENST00000476074	PLEKHG5	O94827	1062 aa		11.15	□□□□□ -0.62
PCDH15-222	ENST00000476074	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.15	□□□□□ -0.62
PCDH15-222	ENST00000476074	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.14	□□□□□ -0.63
PCDH15-222	ENST00000476074	CLCN6	P51797	869 aa		11.1	□□□□□ -0.63
PCDH15-222	ENST00000476074	CD44	P16070	742 aa	Known RBP	11.09	□□□□□ -0.63
PCDH15-222	ENST00000476074	POTEI	P0CG38	1075 aa		11.08	□□□□□ -0.64
PCDH15-222	ENST00000476074	LHX8	Q68G74	356 aa		11.08	□□□□□ -0.64
PCDH15-222	ENST00000476074	DCAF8L2	P0C7V8	631 aa		11.07	□□□□□ -0.64
PCDH15-222	ENST00000476074	ECM2	O94769	699 aa	Predicted RBP	11.06	□□□□□ -0.64

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