RNA–Protein interactions for RNA: ENST00000475916.1

SLF1-204, Transcript of SMC5-SMC6 complex localization factor 1, humanhuman

TSL 2

Gene SLF1, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLF1-204ENST00000475916 CHIC1Q5VXU3 224 aa23.09■■□□□ 1.29
SLF1-204ENST00000475916 AEBP2Q6ZN18 517 aaPredicted RBP22.78■■□□□ 1.24
SLF1-204ENST00000475916 PHF23Q9BUL5 403 aaPredicted RBP20.27■□□□□ 0.84
SLF1-204ENST00000475916 SENP3Q9H4L4 574 aaPredicted RBP19.43■□□□□ 0.7
SLF1-204ENST00000475916 PLPPR3Q6T4P5 718 aa19.19■□□□□ 0.66
SLF1-204ENST00000475916 FOXD1Q16676 465 aa17.81■□□□□ 0.44
SLF1-204ENST00000475916 ADRA2BP18089 450 aa17.76■□□□□ 0.43
SLF1-204ENST00000475916 PPP6R1Q9UPN7 881 aa17.65■□□□□ 0.42
SLF1-204ENST00000475916 KCNA4P22459 653 aa17.31■□□□□ 0.36
SLF1-204ENST00000475916 PIAS4Q8N2W9 510 aaPredicted RBP17.09■□□□□ 0.33
SLF1-204ENST00000475916 EHMT2Q96KQ7 1210 aa17.07■□□□□ 0.32
SLF1-204ENST00000475916 PPP4R3CPQ6ZMV5 832 aa16.94■□□□□ 0.3
SLF1-204ENST00000475916 NCBP3Q53F19 620 aaKnown RBP16.87■□□□□ 0.29
SLF1-204ENST00000475916 SLC4A1APQ9BWU0 796 aaKnown RBP16.73■□□□□ 0.27
SLF1-204ENST00000475916 SCAF1Q9H7N4 1312 aaKnown RBP16.48■□□□□ 0.23
SLF1-204ENST00000475916 CSRNP3Q8WYN3 585 aa16.44■□□□□ 0.22
SLF1-204ENST00000475916 NPM3O75607 178 aaKnown RBP16.42■□□□□ 0.22
SLF1-204ENST00000475916 CNKSR2Q8WXI2 1034 aa16.35■□□□□ 0.21
SLF1-204ENST00000475916 MSH5O43196 834 aa16.3■□□□□ 0.2
SLF1-204ENST00000475916 ZBTB22O15209 634 aa15.85■□□□□ 0.13
SLF1-204ENST00000475916 MAPK8IP2Q13387 824 aaPredicted RBP15.85■□□□□ 0.13
SLF1-204ENST00000475916 RNF216Q9NWF9 866 aaPredicted RBP15.83■□□□□ 0.12
SLF1-204ENST00000475916 DNAJC5BQ9UF47 199 aa15.82■□□□□ 0.12
SLF1-204ENST00000475916 FOXD4L1Q9NU39 408 aa15.81■□□□□ 0.12
SLF1-204ENST00000475916 DMRT2Q9Y5R5 561 aa15.56■□□□□ 0.08
SLF1-204ENST00000475916 HOXD11P31277 338 aaPredicted RBP15.51■□□□□ 0.07
SLF1-204ENST00000475916 SLC4A2P04920 1241 aa15.26■□□□□ 0.03
SLF1-204ENST00000475916 MYCNP04198 464 aaPredicted RBP15.25■□□□□ 0.03
SLF1-204ENST00000475916 ATXN8OSP0DMR3 200 aa15.24■□□□□ 0.03
SLF1-204ENST00000475916 POTEDQ86YR6 584 aa15.19■□□□□ 0.02
SLF1-204ENST00000475916 DCAF8L1A6NGE4 600 aa14.99□□□□□ -0.01
SLF1-204ENST00000475916 AMER1Q5JTC6 1135 aaPredicted RBP14.96□□□□□ -0.01
SLF1-204ENST00000475916 FKBP8Q14318 412 aa14.92□□□□□ -0.02
SLF1-204ENST00000475916 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.92□□□□□ -0.02
SLF1-204ENST00000475916 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.91□□□□□ -0.02
SLF1-204ENST00000475916 HNRNPUL2Q1KMD3 747 aaKnown RBP14.91□□□□□ -0.02
SLF1-204ENST00000475916 SAMD1Q6SPF0 538 aaPredicted RBP14.83□□□□□ -0.04
SLF1-204ENST00000475916 RTN4Q9NQC3 1192 aaKnown RBP14.79□□□□□ -0.04
SLF1-204ENST00000475916 SLC24A1O60721 1099 aa14.67□□□□□ -0.06
SLF1-204ENST00000475916 APLP2Q06481 763 aa14.64□□□□□ -0.07
SLF1-204ENST00000475916 ATF5Q9Y2D1 282 aaPredicted RBP14.61□□□□□ -0.07
SLF1-204ENST00000475916 U3KPZ7 1027 aaPredicted RBP14.6□□□□□ -0.07
SLF1-204ENST00000475916 ZNF219Q9P2Y4 722 aaPredicted RBP14.45□□□□□ -0.1
SLF1-204ENST00000475916 FBXO3Q9UK99 471 aa14.33□□□□□ -0.12
SLF1-204ENST00000475916 SPDYE4A6NLX3 237 aa14.23□□□□□ -0.13
SLF1-204ENST00000475916 FBLN2P98095 1184 aa14.22□□□□□ -0.13
SLF1-204ENST00000475916 TRHP20396 242 aaPredicted RBP14.12□□□□□ -0.15
SLF1-204ENST00000475916 CAPN15O75808 1086 aa14.03□□□□□ -0.16
SLF1-204ENST00000475916 MKRN4PQ13434 485 aaPredicted RBP14.03□□□□□ -0.16
SLF1-204ENST00000475916 POLA2Q14181 598 aa14.03□□□□□ -0.16
SLF1-204ENST00000475916 ZBTB12Q9Y330 459 aaPredicted RBP13.98□□□□□ -0.17
SLF1-204ENST00000475916 VASPP50552 380 aaPredicted RBP13.97□□□□□ -0.17
SLF1-204ENST00000475916 SPINK5Q9NQ38 1064 aaPredicted RBP13.97□□□□□ -0.17
SLF1-204ENST00000475916 PROM2Q8N271 834 aa13.96□□□□□ -0.17
SLF1-204ENST00000475916 RNF39Q9H2S5 420 aa13.93□□□□□ -0.18
SLF1-204ENST00000475916 C1QBPQ07021 282 aaKnown RBP13.9□□□□□ -0.18
SLF1-204ENST00000475916 DCAF8L2P0C7V8 631 aa13.82□□□□□ -0.2
SLF1-204ENST00000475916 IFNLR1Q8IU57 520 aaPredicted RBP13.77□□□□□ -0.21
SLF1-204ENST00000475916 ABCB7O75027 752 aa13.75□□□□□ -0.21
SLF1-204ENST00000475916 PLCB2Q00722 1185 aa13.73□□□□□ -0.21
SLF1-204ENST00000475916 KLHL34Q8N239 644 aa13.7□□□□□ -0.22
SLF1-204ENST00000475916 ZNF692Q9BU19 519 aaPredicted RBP13.66□□□□□ -0.22
SLF1-204ENST00000475916 STAG3Q9UJ98 1225 aa13.66□□□□□ -0.22
SLF1-204ENST00000475916 SPOCK2Q92563 424 aa13.61□□□□□ -0.23
SLF1-204ENST00000475916 HAP1P54257 671 aaPredicted RBP13.6□□□□□ -0.23
SLF1-204ENST00000475916 SPDYE2BA6NHP3 402 aa13.57□□□□□ -0.24
SLF1-204ENST00000475916 SPDYE6P0CI01 402 aa13.57□□□□□ -0.24
SLF1-204ENST00000475916 PKD2Q13563 968 aa13.57□□□□□ -0.24
SLF1-204ENST00000475916 SPDYE2Q495Y8 402 aa13.57□□□□□ -0.24
SLF1-204ENST00000475916 PLCD3Q8N3E9 789 aa13.57□□□□□ -0.24
SLF1-204ENST00000475916 CACNB1Q02641 598 aaPredicted RBP13.53□□□□□ -0.24
SLF1-204ENST00000475916 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.52□□□□□ -0.25
SLF1-204ENST00000475916 PLEKHG5O94827 1062 aa13.51□□□□□ -0.25
SLF1-204ENST00000475916 ECM2O94769 699 aaPredicted RBP13.5□□□□□ -0.25
SLF1-204ENST00000475916 DSG3P32926 999 aa13.5□□□□□ -0.25
SLF1-204ENST00000475916 OSCARQ8IYS5 282 aa13.48□□□□□ -0.25
SLF1-204ENST00000475916 MIER1Q8N108 512 aa13.48□□□□□ -0.25
SLF1-204ENST00000475916 PABPN1Q86U42 306 aaKnown RBP eCLIP13.45□□□□□ -0.26
SLF1-204ENST00000475916 SSUH2Q9Y2M2 353 aa13.45□□□□□ -0.26
SLF1-204ENST00000475916 ZBTB47Q9UFB7 747 aaPredicted RBP13.43□□□□□ -0.26
SLF1-204ENST00000475916 VSIG10Q8N0Z9 540 aa13.41□□□□□ -0.26
SLF1-204ENST00000475916 BBXQ8WY36 941 aaPredicted RBP13.41□□□□□ -0.26
SLF1-204ENST00000475916 BCANQ96GW7 911 aa13.37□□□□□ -0.27
SLF1-204ENST00000475916 CIZ1Q9ULV3 898 aaPredicted RBP13.3□□□□□ -0.28
SLF1-204ENST00000475916 PAXIP1Q6ZW49 1069 aaPredicted RBP13.29□□□□□ -0.28
SLF1-204ENST00000475916 CFAP44Q96MT7 982 aa13.28□□□□□ -0.28
SLF1-204ENST00000475916 TRIM41Q8WV44 630 aa13.24□□□□□ -0.29
SLF1-204ENST00000475916 RGL2O15211 777 aa13.22□□□□□ -0.29
SLF1-204ENST00000475916 SPRYD3Q8NCJ5 442 aa13.22□□□□□ -0.29
SLF1-204ENST00000475916 NPM1P06748 294 aaKnown RBP eCLIP13.18□□□□□ -0.3
SLF1-204ENST00000475916 CHGAP10645 457 aaKnown RBP13.16□□□□□ -0.3
SLF1-204ENST00000475916 GSE1Q14687 1217 aa13.13□□□□□ -0.31
SLF1-204ENST00000475916 TAOK2Q9UL54 1235 aa13.11□□□□□ -0.31
SLF1-204ENST00000475916 KDM2AQ9Y2K7 1162 aa13.05□□□□□ -0.32
SLF1-204ENST00000475916 SPDYE1Q8NFV5 336 aaPredicted RBP13.04□□□□□ -0.32
SLF1-204ENST00000475916 RBM42Q9BTD8 480 aaKnown RBP13.02□□□□□ -0.33
SLF1-204ENST00000475916 DCAF8Q5TAQ9 597 aa13.01□□□□□ -0.33
SLF1-204ENST00000475916 HS6ST3Q8IZP7 471 aa13□□□□□ -0.33
SLF1-204ENST00000475916 TSHZ2Q9NRE2 1034 aa12.99□□□□□ -0.33
SLF1-204ENST00000475916 FAM212AQ96EL1 285 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms