RNA–Protein interactions for RNA: ENST00000475651.5

RBM39-229, Transcript of RNA binding motif protein 39, humanhuman

TSL 5

Gene RBM39, Length 555 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-229ENST00000475651 AEBP2Q6ZN18 517 aaPredicted RBP21.31■■□□□ 1
RBM39-229ENST00000475651 CHIC1Q5VXU3 224 aa20.38■□□□□ 0.85
RBM39-229ENST00000475651 SENP3Q9H4L4 574 aaPredicted RBP18.47■□□□□ 0.55
RBM39-229ENST00000475651 PHF23Q9BUL5 403 aaPredicted RBP18.12■□□□□ 0.49
RBM39-229ENST00000475651 POTEDQ86YR6 584 aa17.66■□□□□ 0.42
RBM39-229ENST00000475651 FOXD1Q16676 465 aa17.19■□□□□ 0.34
RBM39-229ENST00000475651 MSH5O43196 834 aa16.48■□□□□ 0.23
RBM39-229ENST00000475651 PLPPR3Q6T4P5 718 aa16.41■□□□□ 0.22
RBM39-229ENST00000475651 PIAS4Q8N2W9 510 aaPredicted RBP16.06■□□□□ 0.16
RBM39-229ENST00000475651 ADRA2BP18089 450 aa15.85■□□□□ 0.13
RBM39-229ENST00000475651 PPP6R1Q9UPN7 881 aa15.81■□□□□ 0.12
RBM39-229ENST00000475651 SCAF1Q9H7N4 1312 aaKnown RBP14.82□□□□□ -0.04
RBM39-229ENST00000475651 CACNB1Q02641 598 aaPredicted RBP14.66□□□□□ -0.06
RBM39-229ENST00000475651 DMRT2Q9Y5R5 561 aa14.56□□□□□ -0.08
RBM39-229ENST00000475651 MAPK8IP2Q13387 824 aaPredicted RBP14.51□□□□□ -0.09
RBM39-229ENST00000475651 PPP4R3CPQ6ZMV5 832 aa14.29□□□□□ -0.12
RBM39-229ENST00000475651 DCAF8L1A6NGE4 600 aa14.12□□□□□ -0.15
RBM39-229ENST00000475651 CNKSR2Q8WXI2 1034 aa14.1□□□□□ -0.15
RBM39-229ENST00000475651 HOXD11P31277 338 aaPredicted RBP13.98□□□□□ -0.17
RBM39-229ENST00000475651 RNF39Q9H2S5 420 aa13.97□□□□□ -0.17
RBM39-229ENST00000475651 RNF216Q9NWF9 866 aaPredicted RBP13.95□□□□□ -0.18
RBM39-229ENST00000475651 NCBP3Q53F19 620 aaKnown RBP13.94□□□□□ -0.18
RBM39-229ENST00000475651 C1QBPQ07021 282 aaKnown RBP13.72□□□□□ -0.21
RBM39-229ENST00000475651 POTEHQ6S545 545 aa13.65□□□□□ -0.22
RBM39-229ENST00000475651 DNAJC5BQ9UF47 199 aa13.61□□□□□ -0.23
RBM39-229ENST00000475651 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.5□□□□□ -0.259e-13■■□□□ 11.7
RBM39-229ENST00000475651 NPM3O75607 178 aaKnown RBP13.49□□□□□ -0.25
RBM39-229ENST00000475651 KCNA4P22459 653 aa13.18□□□□□ -0.3
RBM39-229ENST00000475651 APLP2Q06481 763 aa13.03□□□□□ -0.32
RBM39-229ENST00000475651 U3KPZ7 1027 aaPredicted RBP13.02□□□□□ -0.33
RBM39-229ENST00000475651 CAPN15O75808 1086 aa12.99□□□□□ -0.33
RBM39-229ENST00000475651 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.95□□□□□ -0.34
RBM39-229ENST00000475651 HNRNPUL2Q1KMD3 747 aaKnown RBP12.95□□□□□ -0.34
RBM39-229ENST00000475651 SPINK5Q9NQ38 1064 aaPredicted RBP12.82□□□□□ -0.36
RBM39-229ENST00000475651 SLC4A2P04920 1241 aa12.8□□□□□ -0.36
RBM39-229ENST00000475651 SAMD1Q6SPF0 538 aaPredicted RBP12.8□□□□□ -0.36
RBM39-229ENST00000475651 ZNF219Q9P2Y4 722 aaPredicted RBP12.8□□□□□ -0.36
RBM39-229ENST00000475651 DSG3P32926 999 aa12.77□□□□□ -0.37
RBM39-229ENST00000475651 TRHP20396 242 aaPredicted RBP12.75□□□□□ -0.37
RBM39-229ENST00000475651 MYCNP04198 464 aaPredicted RBP12.62□□□□□ -0.39
RBM39-229ENST00000475651 ABCB7O75027 752 aa12.58□□□□□ -0.4
RBM39-229ENST00000475651 SLC4A1APQ9BWU0 796 aaKnown RBP12.58□□□□□ -0.4
RBM39-229ENST00000475651 FOXD4L1Q9NU39 408 aa12.45□□□□□ -0.42
RBM39-229ENST00000475651 RBM42Q9BTD8 480 aaKnown RBP12.42□□□□□ -0.42
RBM39-229ENST00000475651 SP7Q8TDD2 431 aaPredicted RBP12.36□□□□□ -0.43
RBM39-229ENST00000475651 POLA2Q14181 598 aa12.35□□□□□ -0.43
RBM39-229ENST00000475651 CHRDL2Q6WN34 429 aa12.29□□□□□ -0.44
RBM39-229ENST00000475651 ZBTB12Q9Y330 459 aaPredicted RBP12.29□□□□□ -0.44
RBM39-229ENST00000475651 ATXN8OSP0DMR3 200 aa12.1□□□□□ -0.47
RBM39-229ENST00000475651 ATF5Q9Y2D1 282 aaPredicted RBP12.08□□□□□ -0.48
RBM39-229ENST00000475651 AKT1S1Q96B36 256 aa12.02□□□□□ -0.49
RBM39-229ENST00000475651 ZBTB22O15209 634 aa12□□□□□ -0.49
RBM39-229ENST00000475651 FBLN2P98095 1184 aa11.96□□□□□ -0.49
RBM39-229ENST00000475651 OSCARQ8IYS5 282 aa11.93□□□□□ -0.5
RBM39-229ENST00000475651 REM2Q8IYK8 340 aaPredicted RBP11.83□□□□□ -0.52
RBM39-229ENST00000475651 SPDYE2BA6NHP3 402 aa11.79□□□□□ -0.52
RBM39-229ENST00000475651 HAX1O00165 279 aa11.79□□□□□ -0.52
RBM39-229ENST00000475651 SPDYE6P0CI01 402 aa11.79□□□□□ -0.52
RBM39-229ENST00000475651 SPDYE2Q495Y8 402 aa11.79□□□□□ -0.52
RBM39-229ENST00000475651 PIP4P2Q8N4L2 257 aa11.79□□□□□ -0.52
RBM39-229ENST00000475651 PITPNM1O00562 1244 aa11.68□□□□□ -0.54
RBM39-229ENST00000475651 ZNF692Q9BU19 519 aaPredicted RBP11.67□□□□□ -0.54
RBM39-229ENST00000475651 SPDYE1Q8NFV5 336 aaPredicted RBP11.63□□□□□ -0.55
RBM39-229ENST00000475651 FXR2P51116 673 aaKnown RBP eCLIP11.6□□□□□ -0.555e-6■□□□□ 9.5
RBM39-229ENST00000475651 EVX2Q03828 476 aa11.6□□□□□ -0.55
RBM39-229ENST00000475651 CLEC11AQ9Y240 323 aa11.6□□□□□ -0.55
RBM39-229ENST00000475651 LHX8Q68G74 356 aa11.56□□□□□ -0.56
RBM39-229ENST00000475651 PLSCR2Q9NRY7 297 aa11.56□□□□□ -0.56
RBM39-229ENST00000475651 MKRN4PQ13434 485 aaPredicted RBP11.54□□□□□ -0.56
RBM39-229ENST00000475651 SSUH2Q9Y2M2 353 aa11.52□□□□□ -0.57
RBM39-229ENST00000475651 CSRNP3Q8WYN3 585 aa11.51□□□□□ -0.57
RBM39-229ENST00000475651 EHMT2Q96KQ7 1210 aa11.49□□□□□ -0.57
RBM39-229ENST00000475651 PRKAR2AP13861 404 aaKnown RBP11.45□□□□□ -0.58
RBM39-229ENST00000475651 PABPN1Q86U42 306 aaKnown RBP eCLIP11.43□□□□□ -0.586e-8■□□□□ 8.5
RBM39-229ENST00000475651 PRR29P0C7W0 189 aa11.42□□□□□ -0.58
RBM39-229ENST00000475651 GABBR2O75899 941 aa11.3□□□□□ -0.6
RBM39-229ENST00000475651 STAG3Q9UJ98 1225 aa11.27□□□□□ -0.61
RBM39-229ENST00000475651 C19orf67A6NJJ6 358 aa11.26□□□□□ -0.61
RBM39-229ENST00000475651 CHADLQ6NUI6 762 aa11.24□□□□□ -0.61
RBM39-229ENST00000475651 SPDYE4A6NLX3 237 aa11.18□□□□□ -0.62
RBM39-229ENST00000475651 FARP1Q9Y4F1 1045 aaPredicted RBP11.13□□□□□ -0.63
RBM39-229ENST00000475651 CLCN6P51797 869 aa11.12□□□□□ -0.63
RBM39-229ENST00000475651 CD44P16070 742 aaKnown RBP11.11□□□□□ -0.63
RBM39-229ENST00000475651 POTEIP0CG38 1075 aa11.07□□□□□ -0.64
RBM39-229ENST00000475651 PAK3O75914 559 aaPredicted RBP11.05□□□□□ -0.64
RBM39-229ENST00000475651 NPM1P06748 294 aaKnown RBP eCLIP11.01□□□□□ -0.65
RBM39-229ENST00000475651 CREBZFQ9NS37 354 aa10.96□□□□□ -0.65
RBM39-229ENST00000475651 ZRANB1Q9UGI0 708 aa10.96□□□□□ -0.65
RBM39-229ENST00000475651 PLEKHG5O94827 1062 aa10.95□□□□□ -0.66
RBM39-229ENST00000475651 DCBLD2Q96PD2 775 aa10.94□□□□□ -0.66
RBM39-229ENST00000475651 POTEMA6NI47 508 aa10.93□□□□□ -0.66
RBM39-229ENST00000475651 ZNF579Q8NAF0 562 aaKnown RBP10.89□□□□□ -0.67
RBM39-229ENST00000475651 PCDH10Q9P2E7 1040 aa10.87□□□□□ -0.67
RBM39-229ENST00000475651 POTEGQ6S5H5 508 aa10.86□□□□□ -0.67
RBM39-229ENST00000475651 OTUD5Q96G74 571 aa10.83□□□□□ -0.68
RBM39-229ENST00000475651 PROM2Q8N271 834 aa10.75□□□□□ -0.69
RBM39-229ENST00000475651 MIER1Q8N108 512 aa10.74□□□□□ -0.69
RBM39-229ENST00000475651 ZBTB47Q9UFB7 747 aaPredicted RBP10.72□□□□□ -0.69
RBM39-229ENST00000475651 PLCD3Q8N3E9 789 aa10.7□□□□□ -0.7
RBM39-229ENST00000475651 PHF12Q96QT6 1004 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms