RNA–Protein interactions for RNA: ENST00000474843.1

SRRM1-210, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 2

Gene SRRM1, Length 817 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-210ENST00000474843 AEBP2Q6ZN18 517 aaPredicted RBP25.43■■□□□ 1.66
SRRM1-210ENST00000474843 CHIC1Q5VXU3 224 aa24.61■■□□□ 1.53
SRRM1-210ENST00000474843 SENP3Q9H4L4 574 aaPredicted RBP21.85■■□□□ 1.09
SRRM1-210ENST00000474843 PHF23Q9BUL5 403 aaPredicted RBP21.69■■□□□ 1.06
SRRM1-210ENST00000474843 FOXD1Q16676 465 aa20.26■□□□□ 0.83
SRRM1-210ENST00000474843 PLPPR3Q6T4P5 718 aa20.02■□□□□ 0.8
SRRM1-210ENST00000474843 ADRA2BP18089 450 aa19.12■□□□□ 0.65
SRRM1-210ENST00000474843 PPP6R1Q9UPN7 881 aa19.11■□□□□ 0.65
SRRM1-210ENST00000474843 MSH5O43196 834 aa19.08■□□□□ 0.64
SRRM1-210ENST00000474843 PIAS4Q8N2W9 510 aaPredicted RBP19■□□□□ 0.63
SRRM1-210ENST00000474843 POTEDQ86YR6 584 aa18.5■□□□□ 0.55
SRRM1-210ENST00000474843 PPP4R3CPQ6ZMV5 832 aa17.69■□□□□ 0.42
SRRM1-210ENST00000474843 SCAF1Q9H7N4 1312 aaKnown RBP17.47■□□□□ 0.39
SRRM1-210ENST00000474843 KCNA4P22459 653 aa17.47■□□□□ 0.39
SRRM1-210ENST00000474843 MAPK8IP2Q13387 824 aaPredicted RBP17.33■□□□□ 0.36
SRRM1-210ENST00000474843 DMRT2Q9Y5R5 561 aa17.28■□□□□ 0.36
SRRM1-210ENST00000474843 NCBP3Q53F19 620 aaKnown RBP17.21■□□□□ 0.35
SRRM1-210ENST00000474843 CNKSR2Q8WXI2 1034 aa17.13■□□□□ 0.33
SRRM1-210ENST00000474843 NPM3O75607 178 aaKnown RBP17.02■□□□□ 0.32
SRRM1-210ENST00000474843 RNF216Q9NWF9 866 aaPredicted RBP16.75■□□□□ 0.27
SRRM1-210ENST00000474843 HOXD11P31277 338 aaPredicted RBP16.65■□□□□ 0.26
SRRM1-210ENST00000474843 DCAF8L1A6NGE4 600 aa16.64■□□□□ 0.25
SRRM1-210ENST00000474843 SLC4A1APQ9BWU0 796 aaKnown RBP16.63■□□□□ 0.25
SRRM1-210ENST00000474843 EHMT2Q96KQ7 1210 aa16.39■□□□□ 0.21
SRRM1-210ENST00000474843 CACNB1Q02641 598 aaPredicted RBP16.37■□□□□ 0.21
SRRM1-210ENST00000474843 DNAJC5BQ9UF47 199 aa16.34■□□□□ 0.21
SRRM1-210ENST00000474843 RNF39Q9H2S5 420 aa16.21■□□□□ 0.19
SRRM1-210ENST00000474843 ZBTB22O15209 634 aa16.08■□□□□ 0.16
SRRM1-210ENST00000474843 C1QBPQ07021 282 aaKnown RBP16.05■□□□□ 0.16
SRRM1-210ENST00000474843 CSRNP3Q8WYN3 585 aa16.05■□□□□ 0.16
SRRM1-210ENST00000474843 SLC4A2P04920 1241 aa16.04■□□□□ 0.16
SRRM1-210ENST00000474843 FOXD4L1Q9NU39 408 aa15.99■□□□□ 0.15
SRRM1-210ENST00000474843 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.94■□□□□ 0.143e-12■□□□□ 9.3
SRRM1-210ENST00000474843 MYCNP04198 464 aaPredicted RBP15.71■□□□□ 0.11
SRRM1-210ENST00000474843 U3KPZ7 1027 aaPredicted RBP15.69■□□□□ 0.1
SRRM1-210ENST00000474843 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.44■□□□□ 0.06
SRRM1-210ENST00000474843 HNRNPUL2Q1KMD3 747 aaKnown RBP15.44■□□□□ 0.06
SRRM1-210ENST00000474843 SAMD1Q6SPF0 538 aaPredicted RBP15.42■□□□□ 0.06
SRRM1-210ENST00000474843 CAPN15O75808 1086 aa15.34■□□□□ 0.05
SRRM1-210ENST00000474843 ATXN8OSP0DMR3 200 aa15.34■□□□□ 0.05
SRRM1-210ENST00000474843 ATF5Q9Y2D1 282 aaPredicted RBP15.34■□□□□ 0.05
SRRM1-210ENST00000474843 APLP2Q06481 763 aa15.27■□□□□ 0.04
SRRM1-210ENST00000474843 SPINK5Q9NQ38 1064 aaPredicted RBP15.26■□□□□ 0.03
SRRM1-210ENST00000474843 DSG3P32926 999 aa15.18■□□□□ 0.02
SRRM1-210ENST00000474843 TRHP20396 242 aaPredicted RBP15.15■□□□□ 0.02
SRRM1-210ENST00000474843 ZNF219Q9P2Y4 722 aaPredicted RBP15.09■□□□□ 0.01
SRRM1-210ENST00000474843 ABCB7O75027 752 aa14.95□□□□□ -0.02
SRRM1-210ENST00000474843 POLA2Q14181 598 aa14.88□□□□□ -0.03
SRRM1-210ENST00000474843 MKRN4PQ13434 485 aaPredicted RBP14.66□□□□□ -0.06
SRRM1-210ENST00000474843 FBLN2P98095 1184 aa14.63□□□□□ -0.07
SRRM1-210ENST00000474843 RBM42Q9BTD8 480 aaKnown RBP14.6□□□□□ -0.07
SRRM1-210ENST00000474843 ZBTB12Q9Y330 459 aaPredicted RBP14.58□□□□□ -0.08
SRRM1-210ENST00000474843 FKBP8Q14318 412 aa14.55□□□□□ -0.08
SRRM1-210ENST00000474843 POTEHQ6S545 545 aa14.54□□□□□ -0.08
SRRM1-210ENST00000474843 OSCARQ8IYS5 282 aa14.42□□□□□ -0.1
SRRM1-210ENST00000474843 SPDYE4A6NLX3 237 aa14.37□□□□□ -0.11
SRRM1-210ENST00000474843 AKT1S1Q96B36 256 aa14.23□□□□□ -0.13
SRRM1-210ENST00000474843 SPDYE2BA6NHP3 402 aa14.22□□□□□ -0.13
SRRM1-210ENST00000474843 SPDYE6P0CI01 402 aa14.22□□□□□ -0.13
SRRM1-210ENST00000474843 SPDYE2Q495Y8 402 aa14.22□□□□□ -0.13
SRRM1-210ENST00000474843 ZNF692Q9BU19 519 aaPredicted RBP14.22□□□□□ -0.13
SRRM1-210ENST00000474843 CHRDL2Q6WN34 429 aa14.19□□□□□ -0.14
SRRM1-210ENST00000474843 SSUH2Q9Y2M2 353 aa14.13□□□□□ -0.15
SRRM1-210ENST00000474843 PROM2Q8N271 834 aa14.09□□□□□ -0.15
SRRM1-210ENST00000474843 PABPN1Q86U42 306 aaKnown RBP eCLIP14.06□□□□□ -0.16
SRRM1-210ENST00000474843 REM2Q8IYK8 340 aaPredicted RBP14.04□□□□□ -0.16
SRRM1-210ENST00000474843 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
SRRM1-210ENST00000474843 PITPNM1O00562 1244 aa13.86□□□□□ -0.19
SRRM1-210ENST00000474843 PIP4P2Q8N4L2 257 aa13.83□□□□□ -0.2
SRRM1-210ENST00000474843 CLEC11AQ9Y240 323 aa13.8□□□□□ -0.2
SRRM1-210ENST00000474843 SPDYE1Q8NFV5 336 aaPredicted RBP13.79□□□□□ -0.2
SRRM1-210ENST00000474843 VASPP50552 380 aaPredicted RBP13.77□□□□□ -0.21
SRRM1-210ENST00000474843 STAG3Q9UJ98 1225 aa13.77□□□□□ -0.21
SRRM1-210ENST00000474843 FXR2P51116 673 aaKnown RBP eCLIP13.76□□□□□ -0.21
SRRM1-210ENST00000474843 HAX1O00165 279 aa13.66□□□□□ -0.22
SRRM1-210ENST00000474843 SP7Q8TDD2 431 aaPredicted RBP13.65□□□□□ -0.22
SRRM1-210ENST00000474843 PRR29P0C7W0 189 aa13.63□□□□□ -0.23
SRRM1-210ENST00000474843 PLCD3Q8N3E9 789 aa13.63□□□□□ -0.23
SRRM1-210ENST00000474843 MIER1Q8N108 512 aa13.62□□□□□ -0.23
SRRM1-210ENST00000474843 IFNLR1Q8IU57 520 aaPredicted RBP13.59□□□□□ -0.23
SRRM1-210ENST00000474843 PRKAR2AP13861 404 aaKnown RBP13.55□□□□□ -0.24
SRRM1-210ENST00000474843 KLHL34Q8N239 644 aa13.52□□□□□ -0.25
SRRM1-210ENST00000474843 PLEKHG5O94827 1062 aa13.5□□□□□ -0.25
SRRM1-210ENST00000474843 CREBZFQ9NS37 354 aa13.5□□□□□ -0.25
SRRM1-210ENST00000474843 CHADLQ6NUI6 762 aa13.47□□□□□ -0.25
SRRM1-210ENST00000474843 RTN4Q9NQC3 1192 aaKnown RBP13.44□□□□□ -0.26
SRRM1-210ENST00000474843 AMER1Q5JTC6 1135 aaPredicted RBP13.41□□□□□ -0.26
SRRM1-210ENST00000474843 SPOCK2Q92563 424 aa13.38□□□□□ -0.27
SRRM1-210ENST00000474843 ZBTB47Q9UFB7 747 aaPredicted RBP13.38□□□□□ -0.27
SRRM1-210ENST00000474843 MNX1P50219 401 aaPredicted RBP13.35□□□□□ -0.27
SRRM1-210ENST00000474843 EVX2Q03828 476 aa13.34□□□□□ -0.27
SRRM1-210ENST00000474843 C19orf67A6NJJ6 358 aa13.32□□□□□ -0.28
SRRM1-210ENST00000474843 FARP1Q9Y4F1 1045 aaPredicted RBP13.28□□□□□ -0.28
SRRM1-210ENST00000474843 NUBP1P53384 320 aa13.24□□□□□ -0.29
SRRM1-210ENST00000474843 NPM1P06748 294 aaKnown RBP eCLIP13.23□□□□□ -0.29
SRRM1-210ENST00000474843 CIZ1Q9ULV3 898 aaPredicted RBP13.22□□□□□ -0.29
SRRM1-210ENST00000474843 RASEFQ8IZ41 740 aa13.2□□□□□ -0.3
SRRM1-210ENST00000474843 PKD2Q13563 968 aa13.17□□□□□ -0.3
SRRM1-210ENST00000474843 DCAF8Q5TAQ9 597 aa13.15□□□□□ -0.3
SRRM1-210ENST00000474843 FAM212AQ96EL1 285 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms