RNA–Protein interactions for RNA: ENST00000474240.1

ECHDC1-213, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 482 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-213ENST00000474240 AEBP2Q6ZN18 517 aaPredicted RBP23.09■■□□□ 1.29
ECHDC1-213ENST00000474240 CHIC1Q5VXU3 224 aa21.54■■□□□ 1.04
ECHDC1-213ENST00000474240 SENP3Q9H4L4 574 aaPredicted RBP19.72■□□□□ 0.75
ECHDC1-213ENST00000474240 PHF23Q9BUL5 403 aaPredicted RBP19.41■□□□□ 0.7
ECHDC1-213ENST00000474240 FOXD1Q16676 465 aa18.46■□□□□ 0.55
ECHDC1-213ENST00000474240 POTEDQ86YR6 584 aa17.7■□□□□ 0.42
ECHDC1-213ENST00000474240 MSH5O43196 834 aa17.39■□□□□ 0.37
ECHDC1-213ENST00000474240 PIAS4Q8N2W9 510 aaPredicted RBP17.17■□□□□ 0.34
ECHDC1-213ENST00000474240 PLPPR3Q6T4P5 718 aa16.99■□□□□ 0.31
ECHDC1-213ENST00000474240 PPP6R1Q9UPN7 881 aa16.95■□□□□ 0.3
ECHDC1-213ENST00000474240 ADRA2BP18089 450 aa16.89■□□□□ 0.29
ECHDC1-213ENST00000474240 MAPK8IP2Q13387 824 aaPredicted RBP15.63■□□□□ 0.09
ECHDC1-213ENST00000474240 DMRT2Q9Y5R5 561 aa15.57■□□□□ 0.08
ECHDC1-213ENST00000474240 SCAF1Q9H7N4 1312 aaKnown RBP15.38■□□□□ 0.05
ECHDC1-213ENST00000474240 CACNB1Q02641 598 aaPredicted RBP15.21■□□□□ 0.03
ECHDC1-213ENST00000474240 DCAF8L1A6NGE4 600 aa15.04■□□□□ -0
ECHDC1-213ENST00000474240 PPP4R3CPQ6ZMV5 832 aa14.86□□□□□ -0.03
ECHDC1-213ENST00000474240 HOXD11P31277 338 aaPredicted RBP14.83□□□□□ -0.04
ECHDC1-213ENST00000474240 RNF39Q9H2S5 420 aa14.82□□□□□ -0.04
ECHDC1-213ENST00000474240 CNKSR2Q8WXI2 1034 aa14.64□□□□□ -0.07
ECHDC1-213ENST00000474240 RNF216Q9NWF9 866 aaPredicted RBP14.61□□□□□ -0.07
ECHDC1-213ENST00000474240 C1QBPQ07021 282 aaKnown RBP14.54□□□□□ -0.08
ECHDC1-213ENST00000474240 DNAJC5BQ9UF47 199 aa14.32□□□□□ -0.12
ECHDC1-213ENST00000474240 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.17□□□□□ -0.141e-7■■■■□ 21.5
ECHDC1-213ENST00000474240 NCBP3Q53F19 620 aaKnown RBP14.13□□□□□ -0.15
ECHDC1-213ENST00000474240 NPM3O75607 178 aaKnown RBP13.98□□□□□ -0.17
ECHDC1-213ENST00000474240 U3KPZ7 1027 aaPredicted RBP13.85□□□□□ -0.19
ECHDC1-213ENST00000474240 POTEHQ6S545 545 aa13.78□□□□□ -0.2
ECHDC1-213ENST00000474240 SPINK5Q9NQ38 1064 aaPredicted RBP13.78□□□□□ -0.2
ECHDC1-213ENST00000474240 CAPN15O75808 1086 aa13.77□□□□□ -0.21
ECHDC1-213ENST00000474240 DSG3P32926 999 aa13.74□□□□□ -0.21
ECHDC1-213ENST00000474240 ABCB7O75027 752 aa13.46□□□□□ -0.25
ECHDC1-213ENST00000474240 TRHP20396 242 aaPredicted RBP13.46□□□□□ -0.25
ECHDC1-213ENST00000474240 SLC4A2P04920 1241 aa13.45□□□□□ -0.26
ECHDC1-213ENST00000474240 KCNA4P22459 653 aa13.38□□□□□ -0.27
ECHDC1-213ENST00000474240 ZNF219Q9P2Y4 722 aaPredicted RBP13.37□□□□□ -0.27
ECHDC1-213ENST00000474240 APLP2Q06481 763 aa13.34□□□□□ -0.27
ECHDC1-213ENST00000474240 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.23□□□□□ -0.29
ECHDC1-213ENST00000474240 HNRNPUL2Q1KMD3 747 aaKnown RBP13.23□□□□□ -0.29
ECHDC1-213ENST00000474240 SAMD1Q6SPF0 538 aaPredicted RBP13.16□□□□□ -0.3
ECHDC1-213ENST00000474240 RBM42Q9BTD8 480 aaKnown RBP13.11□□□□□ -0.31
ECHDC1-213ENST00000474240 CHRDL2Q6WN34 429 aa13.01□□□□□ -0.33
ECHDC1-213ENST00000474240 POLA2Q14181 598 aa12.97□□□□□ -0.33
ECHDC1-213ENST00000474240 MYCNP04198 464 aaPredicted RBP12.93□□□□□ -0.34
ECHDC1-213ENST00000474240 SP7Q8TDD2 431 aaPredicted RBP12.73□□□□□ -0.37
ECHDC1-213ENST00000474240 AKT1S1Q96B36 256 aa12.71□□□□□ -0.37
ECHDC1-213ENST00000474240 ATF5Q9Y2D1 282 aaPredicted RBP12.69□□□□□ -0.38
ECHDC1-213ENST00000474240 ZBTB12Q9Y330 459 aaPredicted RBP12.64□□□□□ -0.39
ECHDC1-213ENST00000474240 OSCARQ8IYS5 282 aa12.63□□□□□ -0.39
ECHDC1-213ENST00000474240 PIP4P2Q8N4L2 257 aa12.63□□□□□ -0.39
ECHDC1-213ENST00000474240 REM2Q8IYK8 340 aaPredicted RBP12.62□□□□□ -0.39
ECHDC1-213ENST00000474240 FOXD4L1Q9NU39 408 aa12.58□□□□□ -0.4
ECHDC1-213ENST00000474240 PITPNM1O00562 1244 aa12.53□□□□□ -0.4
ECHDC1-213ENST00000474240 SLC4A1APQ9BWU0 796 aaKnown RBP12.53□□□□□ -0.4
ECHDC1-213ENST00000474240 HAX1O00165 279 aa12.5□□□□□ -0.41
ECHDC1-213ENST00000474240 FXR2P51116 673 aaKnown RBP eCLIP12.44□□□□□ -0.42
ECHDC1-213ENST00000474240 EVX2Q03828 476 aa12.33□□□□□ -0.44
ECHDC1-213ENST00000474240 ZBTB22O15209 634 aa12.3□□□□□ -0.44
ECHDC1-213ENST00000474240 SPDYE2BA6NHP3 402 aa12.23□□□□□ -0.45
ECHDC1-213ENST00000474240 SPDYE6P0CI01 402 aa12.23□□□□□ -0.45
ECHDC1-213ENST00000474240 SPDYE2Q495Y8 402 aa12.23□□□□□ -0.45
ECHDC1-213ENST00000474240 PRKAR2AP13861 404 aaKnown RBP12.19□□□□□ -0.46
ECHDC1-213ENST00000474240 FBLN2P98095 1184 aa12.19□□□□□ -0.46
ECHDC1-213ENST00000474240 CLEC11AQ9Y240 323 aa12.18□□□□□ -0.46
ECHDC1-213ENST00000474240 ATXN8OSP0DMR3 200 aa12.16□□□□□ -0.46
ECHDC1-213ENST00000474240 SPDYE1Q8NFV5 336 aaPredicted RBP12.12□□□□□ -0.47
ECHDC1-213ENST00000474240 MKRN4PQ13434 485 aaPredicted RBP12.08□□□□□ -0.48
ECHDC1-213ENST00000474240 C19orf67A6NJJ6 358 aa12.07□□□□□ -0.48
ECHDC1-213ENST00000474240 ZNF692Q9BU19 519 aaPredicted RBP12.03□□□□□ -0.48
ECHDC1-213ENST00000474240 SSUH2Q9Y2M2 353 aa12.03□□□□□ -0.48
ECHDC1-213ENST00000474240 GABBR2O75899 941 aa12.01□□□□□ -0.49
ECHDC1-213ENST00000474240 CHADLQ6NUI6 762 aa12.01□□□□□ -0.49
ECHDC1-213ENST00000474240 LHX8Q68G74 356 aa11.93□□□□□ -0.5
ECHDC1-213ENST00000474240 PRR29P0C7W0 189 aa11.87□□□□□ -0.51
ECHDC1-213ENST00000474240 PABPN1Q86U42 306 aaKnown RBP eCLIP11.86□□□□□ -0.51
ECHDC1-213ENST00000474240 CD44P16070 742 aaKnown RBP11.79□□□□□ -0.52
ECHDC1-213ENST00000474240 POTEIP0CG38 1075 aa11.76□□□□□ -0.53
ECHDC1-213ENST00000474240 FARP1Q9Y4F1 1045 aaPredicted RBP11.72□□□□□ -0.53
ECHDC1-213ENST00000474240 DCBLD2Q96PD2 775 aa11.6□□□□□ -0.55
ECHDC1-213ENST00000474240 PLSCR2Q9NRY7 297 aa11.57□□□□□ -0.56
ECHDC1-213ENST00000474240 CLCN6P51797 869 aa11.56□□□□□ -0.56
ECHDC1-213ENST00000474240 ZNF579Q8NAF0 562 aaKnown RBP11.56□□□□□ -0.56
ECHDC1-213ENST00000474240 ZRANB1Q9UGI0 708 aa11.56□□□□□ -0.56
ECHDC1-213ENST00000474240 CREBZFQ9NS37 354 aa11.49□□□□□ -0.57
ECHDC1-213ENST00000474240 GALR2O43603 387 aaPredicted RBP11.48□□□□□ -0.57
ECHDC1-213ENST00000474240 OTUD5Q96G74 571 aa11.4□□□□□ -0.58
ECHDC1-213ENST00000474240 PHF12Q96QT6 1004 aa11.39□□□□□ -0.59
ECHDC1-213ENST00000474240 STAG3Q9UJ98 1225 aa11.39□□□□□ -0.59
ECHDC1-213ENST00000474240 POTEB2H3BUK9 544 aa11.37□□□□□ -0.59
ECHDC1-213ENST00000474240 PAK3O75914 559 aaPredicted RBP11.35□□□□□ -0.59
ECHDC1-213ENST00000474240 CSRNP3Q8WYN3 585 aa11.34□□□□□ -0.59
ECHDC1-213ENST00000474240 SPDYE4A6NLX3 237 aa11.29□□□□□ -0.6
ECHDC1-213ENST00000474240 POTEMA6NI47 508 aa11.28□□□□□ -0.6
ECHDC1-213ENST00000474240 PELP1Q8IZL8 1130 aaKnown RBP11.28□□□□□ -0.6
ECHDC1-213ENST00000474240 MNX1P50219 401 aaPredicted RBP11.24□□□□□ -0.61
ECHDC1-213ENST00000474240 POTEGQ6S5H5 508 aa11.24□□□□□ -0.61
ECHDC1-213ENST00000474240 NPM1P06748 294 aaKnown RBP eCLIP11.23□□□□□ -0.61
ECHDC1-213ENST00000474240 MS4A3Q96HJ5 214 aa11.22□□□□□ -0.61
ECHDC1-213ENST00000474240 METRNQ9UJH8 293 aa11.2□□□□□ -0.62
ECHDC1-213ENST00000474240 ASTLQ6HA08 431 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms