RNA–Protein interactions for RNA: ENST00000473460.1

GINS1-202, Transcript of GINS complex subunit 1, humanhuman

TSL 2

Gene GINS1, Length 541 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GINS1-202ENST00000473460 AEBP2Q6ZN18 517 aaPredicted RBP25.85■■□□□ 1.73
GINS1-202ENST00000473460 CHIC1Q5VXU3 224 aa24.56■■□□□ 1.52
GINS1-202ENST00000473460 SENP3Q9H4L4 574 aaPredicted RBP21.94■■□□□ 1.1
GINS1-202ENST00000473460 PHF23Q9BUL5 403 aaPredicted RBP21.7■■□□□ 1.06
GINS1-202ENST00000473460 FOXD1Q16676 465 aa20.5■□□□□ 0.87
GINS1-202ENST00000473460 PLPPR3Q6T4P5 718 aa19.61■□□□□ 0.73
GINS1-202ENST00000473460 PPP6R1Q9UPN7 881 aa19.26■□□□□ 0.67
GINS1-202ENST00000473460 ADRA2BP18089 450 aa19.16■□□□□ 0.66
GINS1-202ENST00000473460 PIAS4Q8N2W9 510 aaPredicted RBP19.13■□□□□ 0.65
GINS1-202ENST00000473460 MSH5O43196 834 aa19.09■□□□□ 0.65
GINS1-202ENST00000473460 POTEDQ86YR6 584 aa18.59■□□□□ 0.57
GINS1-202ENST00000473460 MAPK8IP2Q13387 824 aaPredicted RBP17.6■□□□□ 0.41
GINS1-202ENST00000473460 DMRT2Q9Y5R5 561 aa17.44■□□□□ 0.38
GINS1-202ENST00000473460 SCAF1Q9H7N4 1312 aaKnown RBP17.43■□□□□ 0.38
GINS1-202ENST00000473460 PPP4R3CPQ6ZMV5 832 aa17.22■□□□□ 0.35
GINS1-202ENST00000473460 CNKSR2Q8WXI2 1034 aa16.87■□□□□ 0.29
GINS1-202ENST00000473460 HOXD11P31277 338 aaPredicted RBP16.84■□□□□ 0.29
GINS1-202ENST00000473460 RNF216Q9NWF9 866 aaPredicted RBP16.71■□□□□ 0.27
GINS1-202ENST00000473460 DCAF8L1A6NGE4 600 aa16.66■□□□□ 0.26
GINS1-202ENST00000473460 NCBP3Q53F19 620 aaKnown RBP16.5■□□□□ 0.23
GINS1-202ENST00000473460 NPM3O75607 178 aaKnown RBP16.36■□□□□ 0.21
GINS1-202ENST00000473460 CACNB1Q02641 598 aaPredicted RBP16.34■□□□□ 0.21
GINS1-202ENST00000473460 RNF39Q9H2S5 420 aa16.34■□□□□ 0.21
GINS1-202ENST00000473460 DNAJC5BQ9UF47 199 aa16.22■□□□□ 0.19
GINS1-202ENST00000473460 KCNA4P22459 653 aa16.11■□□□□ 0.17
GINS1-202ENST00000473460 C1QBPQ07021 282 aaKnown RBP16.07■□□□□ 0.16
GINS1-202ENST00000473460 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.97■□□□□ 0.154e-7■□□□□ 9.3
GINS1-202ENST00000473460 U3KPZ7 1027 aaPredicted RBP15.72■□□□□ 0.11
GINS1-202ENST00000473460 SLC4A2P04920 1241 aa15.63■□□□□ 0.09
GINS1-202ENST00000473460 SPINK5Q9NQ38 1064 aaPredicted RBP15.48■□□□□ 0.07
GINS1-202ENST00000473460 CAPN15O75808 1086 aa15.38■□□□□ 0.05
GINS1-202ENST00000473460 DSG3P32926 999 aa15.34■□□□□ 0.05
GINS1-202ENST00000473460 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.19■□□□□ 0.02
GINS1-202ENST00000473460 HNRNPUL2Q1KMD3 747 aaKnown RBP15.19■□□□□ 0.02
GINS1-202ENST00000473460 SLC4A1APQ9BWU0 796 aaKnown RBP15.17■□□□□ 0.02
GINS1-202ENST00000473460 TRHP20396 242 aaPredicted RBP15.16■□□□□ 0.02
GINS1-202ENST00000473460 APLP2Q06481 763 aa15.16■□□□□ 0.02
GINS1-202ENST00000473460 SAMD1Q6SPF0 538 aaPredicted RBP15.13■□□□□ 0.01
GINS1-202ENST00000473460 ZNF219Q9P2Y4 722 aaPredicted RBP15.12■□□□□ 0.01
GINS1-202ENST00000473460 MYCNP04198 464 aaPredicted RBP15.09■□□□□ 0.01
GINS1-202ENST00000473460 ABCB7O75027 752 aa15.07■□□□□ 0
GINS1-202ENST00000473460 FOXD4L1Q9NU39 408 aa14.97□□□□□ -0.01
GINS1-202ENST00000473460 ZBTB22O15209 634 aa14.86□□□□□ -0.03
GINS1-202ENST00000473460 ATF5Q9Y2D1 282 aaPredicted RBP14.82□□□□□ -0.04
GINS1-202ENST00000473460 POLA2Q14181 598 aa14.78□□□□□ -0.04
GINS1-202ENST00000473460 POTEHQ6S545 545 aa14.56□□□□□ -0.08
GINS1-202ENST00000473460 RBM42Q9BTD8 480 aaKnown RBP14.55□□□□□ -0.08
GINS1-202ENST00000473460 ATXN8OSP0DMR3 200 aa14.5□□□□□ -0.09
GINS1-202ENST00000473460 ZBTB12Q9Y330 459 aaPredicted RBP14.43□□□□□ -0.1
GINS1-202ENST00000473460 OSCARQ8IYS5 282 aa14.33□□□□□ -0.12
GINS1-202ENST00000473460 AKT1S1Q96B36 256 aa14.27□□□□□ -0.13
GINS1-202ENST00000473460 CHRDL2Q6WN34 429 aa14.25□□□□□ -0.13
GINS1-202ENST00000473460 CSRNP3Q8WYN3 585 aa14.2□□□□□ -0.14
GINS1-202ENST00000473460 REM2Q8IYK8 340 aaPredicted RBP14.16□□□□□ -0.14
GINS1-202ENST00000473460 MKRN4PQ13434 485 aaPredicted RBP14.13□□□□□ -0.15
GINS1-202ENST00000473460 FBLN2P98095 1184 aa14.11□□□□□ -0.15
GINS1-202ENST00000473460 SPDYE2BA6NHP3 402 aa14.03□□□□□ -0.16
GINS1-202ENST00000473460 SPDYE6P0CI01 402 aa14.03□□□□□ -0.16
GINS1-202ENST00000473460 SPDYE2Q495Y8 402 aa14.03□□□□□ -0.16
GINS1-202ENST00000473460 PITPNM1O00562 1244 aa14.01□□□□□ -0.17
GINS1-202ENST00000473460 EHMT2Q96KQ7 1210 aa14□□□□□ -0.17
GINS1-202ENST00000473460 PIP4P2Q8N4L2 257 aa13.95□□□□□ -0.18
GINS1-202ENST00000473460 FXR2P51116 673 aaKnown RBP eCLIP13.89□□□□□ -0.19
GINS1-202ENST00000473460 SSUH2Q9Y2M2 353 aa13.89□□□□□ -0.19
GINS1-202ENST00000473460 ZNF692Q9BU19 519 aaPredicted RBP13.86□□□□□ -0.19
GINS1-202ENST00000473460 SPDYE1Q8NFV5 336 aaPredicted RBP13.75□□□□□ -0.21
GINS1-202ENST00000473460 CLEC11AQ9Y240 323 aa13.73□□□□□ -0.21
GINS1-202ENST00000473460 PABPN1Q86U42 306 aaKnown RBP eCLIP13.68□□□□□ -0.22
GINS1-202ENST00000473460 SP7Q8TDD2 431 aaPredicted RBP13.67□□□□□ -0.22
GINS1-202ENST00000473460 HAX1O00165 279 aa13.63□□□□□ -0.23
GINS1-202ENST00000473460 PRKAR2AP13861 404 aaKnown RBP13.63□□□□□ -0.23
GINS1-202ENST00000473460 EVX2Q03828 476 aa13.56□□□□□ -0.24
GINS1-202ENST00000473460 CHADLQ6NUI6 762 aa13.52□□□□□ -0.25
GINS1-202ENST00000473460 PRR29P0C7W0 189 aa13.51□□□□□ -0.25
GINS1-202ENST00000473460 C19orf67A6NJJ6 358 aa13.43□□□□□ -0.26
GINS1-202ENST00000473460 SPDYE4A6NLX3 237 aa13.43□□□□□ -0.26
GINS1-202ENST00000473460 FARP1Q9Y4F1 1045 aaPredicted RBP13.29□□□□□ -0.28
GINS1-202ENST00000473460 STAG3Q9UJ98 1225 aa13.27□□□□□ -0.29
GINS1-202ENST00000473460 CREBZFQ9NS37 354 aa13.26□□□□□ -0.29
GINS1-202ENST00000473460 GABBR2O75899 941 aa13.21□□□□□ -0.29
GINS1-202ENST00000473460 CD44P16070 742 aaKnown RBP13.19□□□□□ -0.3
GINS1-202ENST00000473460 PROM2Q8N271 834 aa13.18□□□□□ -0.3
GINS1-202ENST00000473460 MNX1P50219 401 aaPredicted RBP13.06□□□□□ -0.32
GINS1-202ENST00000473460 ZNF579Q8NAF0 562 aaKnown RBP13.01□□□□□ -0.33
GINS1-202ENST00000473460 ZRANB1Q9UGI0 708 aa13.01□□□□□ -0.33
GINS1-202ENST00000473460 POTEIP0CG38 1075 aa12.98□□□□□ -0.33
GINS1-202ENST00000473460 CLCN6P51797 869 aa12.96□□□□□ -0.33
GINS1-202ENST00000473460 NPM1P06748 294 aaKnown RBP eCLIP12.93□□□□□ -0.34
GINS1-202ENST00000473460 GALR2O43603 387 aaPredicted RBP12.87□□□□□ -0.35
GINS1-202ENST00000473460 PHF12Q96QT6 1004 aa12.87□□□□□ -0.35
GINS1-202ENST00000473460 PAK3O75914 559 aaPredicted RBP12.86□□□□□ -0.35
GINS1-202ENST00000473460 FKBP8Q14318 412 aa12.83□□□□□ -0.36
GINS1-202ENST00000473460 LHX8Q68G74 356 aa12.82□□□□□ -0.36
GINS1-202ENST00000473460 DCBLD2Q96PD2 775 aa12.81□□□□□ -0.36
GINS1-202ENST00000473460 MIER1Q8N108 512 aa12.77□□□□□ -0.37
GINS1-202ENST00000473460 TSPYL2Q9H2G4 693 aaPredicted RBP12.74□□□□□ -0.37
GINS1-202ENST00000473460 CCDC61Q9Y6R9 512 aa12.72□□□□□ -0.37
GINS1-202ENST00000473460 MS4A3Q96HJ5 214 aa12.71□□□□□ -0.37
GINS1-202ENST00000473460 PLEKHG5O94827 1062 aa12.69□□□□□ -0.38
GINS1-202ENST00000473460 RASEFQ8IZ41 740 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms