RNA–Protein interactions for RNA: ENST00000472673.5

COMMD3-211, Transcript of COMM domain containing 3, humanhuman

TSL 3

Gene COMMD3, Length 237 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-211ENST00000472673 AEBP2Q6ZN18 517 aaPredicted RBP22.45■■□□□ 1.18
COMMD3-211ENST00000472673 CHIC1Q5VXU3 224 aa21.67■■□□□ 1.06
COMMD3-211ENST00000472673 SENP3Q9H4L4 574 aaPredicted RBP19.15■□□□□ 0.66
COMMD3-211ENST00000472673 PHF23Q9BUL5 403 aaPredicted RBP19.04■□□□□ 0.64
COMMD3-211ENST00000472673 FOXD1Q16676 465 aa17.89■□□□□ 0.45
COMMD3-211ENST00000472673 PLPPR3Q6T4P5 718 aa17.55■□□□□ 0.4
COMMD3-211ENST00000472673 ADRA2BP18089 450 aa16.85■□□□□ 0.29
COMMD3-211ENST00000472673 PPP6R1Q9UPN7 881 aa16.85■□□□□ 0.29
COMMD3-211ENST00000472673 MSH5O43196 834 aa16.78■□□□□ 0.28
COMMD3-211ENST00000472673 POTEDQ86YR6 584 aa16.69■□□□□ 0.26
COMMD3-211ENST00000472673 PIAS4Q8N2W9 510 aaPredicted RBP16.67■□□□□ 0.26
COMMD3-211ENST00000472673 PPP4R3CPQ6ZMV5 832 aa15.46■□□□□ 0.07
COMMD3-211ENST00000472673 SCAF1Q9H7N4 1312 aaKnown RBP15.41■□□□□ 0.06
COMMD3-211ENST00000472673 MAPK8IP2Q13387 824 aaPredicted RBP15.32■□□□□ 0.04
COMMD3-211ENST00000472673 DMRT2Q9Y5R5 561 aa15.17■□□□□ 0.02
COMMD3-211ENST00000472673 CNKSR2Q8WXI2 1034 aa15.04■□□□□ -0
COMMD3-211ENST00000472673 NCBP3Q53F19 620 aaKnown RBP15.02■□□□□ -0
COMMD3-211ENST00000472673 KCNA4P22459 653 aa14.96□□□□□ -0.01
COMMD3-211ENST00000472673 NPM3O75607 178 aaKnown RBP14.79□□□□□ -0.04
COMMD3-211ENST00000472673 RNF216Q9NWF9 866 aaPredicted RBP14.77□□□□□ -0.05
COMMD3-211ENST00000472673 HOXD11P31277 338 aaPredicted RBP14.73□□□□□ -0.05
COMMD3-211ENST00000472673 DCAF8L1A6NGE4 600 aa14.54□□□□□ -0.08
COMMD3-211ENST00000472673 CACNB1Q02641 598 aaPredicted RBP14.5□□□□□ -0.09
COMMD3-211ENST00000472673 RNF39Q9H2S5 420 aa14.32□□□□□ -0.12
COMMD3-211ENST00000472673 DNAJC5BQ9UF47 199 aa14.31□□□□□ -0.12
COMMD3-211ENST00000472673 SLC4A1APQ9BWU0 796 aaKnown RBP14.23□□□□□ -0.13
COMMD3-211ENST00000472673 C1QBPQ07021 282 aaKnown RBP14.09□□□□□ -0.15
COMMD3-211ENST00000472673 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.09□□□□□ -0.15
COMMD3-211ENST00000472673 SLC4A2P04920 1241 aa13.99□□□□□ -0.17
COMMD3-211ENST00000472673 U3KPZ7 1027 aaPredicted RBP13.82□□□□□ -0.2
COMMD3-211ENST00000472673 FOXD4L1Q9NU39 408 aa13.8□□□□□ -0.2
COMMD3-211ENST00000472673 ZBTB22O15209 634 aa13.75□□□□□ -0.21
COMMD3-211ENST00000472673 EHMT2Q96KQ7 1210 aa13.7□□□□□ -0.22
COMMD3-211ENST00000472673 MYCNP04198 464 aaPredicted RBP13.68□□□□□ -0.22
COMMD3-211ENST00000472673 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.6□□□□□ -0.23
COMMD3-211ENST00000472673 HNRNPUL2Q1KMD3 747 aaKnown RBP13.6□□□□□ -0.23
COMMD3-211ENST00000472673 CSRNP3Q8WYN3 585 aa13.57□□□□□ -0.24
COMMD3-211ENST00000472673 SAMD1Q6SPF0 538 aaPredicted RBP13.55□□□□□ -0.24
COMMD3-211ENST00000472673 APLP2Q06481 763 aa13.51□□□□□ -0.25
COMMD3-211ENST00000472673 SPINK5Q9NQ38 1064 aaPredicted RBP13.49□□□□□ -0.25
COMMD3-211ENST00000472673 CAPN15O75808 1086 aa13.46□□□□□ -0.25
COMMD3-211ENST00000472673 TRHP20396 242 aaPredicted RBP13.37□□□□□ -0.27
COMMD3-211ENST00000472673 DSG3P32926 999 aa13.36□□□□□ -0.27
COMMD3-211ENST00000472673 ZNF219Q9P2Y4 722 aaPredicted RBP13.33□□□□□ -0.28
COMMD3-211ENST00000472673 ATF5Q9Y2D1 282 aaPredicted RBP13.32□□□□□ -0.28
COMMD3-211ENST00000472673 ATXN8OSP0DMR3 200 aa13.31□□□□□ -0.28
COMMD3-211ENST00000472673 ABCB7O75027 752 aa13.2□□□□□ -0.3
COMMD3-211ENST00000472673 POLA2Q14181 598 aa13.1□□□□□ -0.31
COMMD3-211ENST00000472673 POTEHQ6S545 545 aa13.03□□□□□ -0.32
COMMD3-211ENST00000472673 ZBTB12Q9Y330 459 aaPredicted RBP12.87□□□□□ -0.35
COMMD3-211ENST00000472673 FBLN2P98095 1184 aa12.79□□□□□ -0.36
COMMD3-211ENST00000472673 MKRN4PQ13434 485 aaPredicted RBP12.72□□□□□ -0.37
COMMD3-211ENST00000472673 RBM42Q9BTD8 480 aaKnown RBP12.72□□□□□ -0.37
COMMD3-211ENST00000472673 OSCARQ8IYS5 282 aa12.67□□□□□ -0.38
COMMD3-211ENST00000472673 CHRDL2Q6WN34 429 aa12.53□□□□□ -0.4
COMMD3-211ENST00000472673 SPDYE2BA6NHP3 402 aa12.51□□□□□ -0.41
COMMD3-211ENST00000472673 SPDYE6P0CI01 402 aa12.51□□□□□ -0.41
COMMD3-211ENST00000472673 SPDYE2Q495Y8 402 aa12.51□□□□□ -0.41
COMMD3-211ENST00000472673 ZNF692Q9BU19 519 aaPredicted RBP12.46□□□□□ -0.41
COMMD3-211ENST00000472673 AKT1S1Q96B36 256 aa12.43□□□□□ -0.42
COMMD3-211ENST00000472673 SPDYE4A6NLX3 237 aa12.4□□□□□ -0.42
COMMD3-211ENST00000472673 SSUH2Q9Y2M2 353 aa12.38□□□□□ -0.43
COMMD3-211ENST00000472673 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
COMMD3-211ENST00000472673 FKBP8Q14318 412 aa12.3□□□□□ -0.44
COMMD3-211ENST00000472673 PABPN1Q86U42 306 aaKnown RBP eCLIP12.29□□□□□ -0.44
COMMD3-211ENST00000472673 PIP4P2Q8N4L2 257 aa12.2□□□□□ -0.46
COMMD3-211ENST00000472673 PITPNM1O00562 1244 aa12.19□□□□□ -0.46
COMMD3-211ENST00000472673 SPDYE1Q8NFV5 336 aaPredicted RBP12.18□□□□□ -0.46
COMMD3-211ENST00000472673 CLEC11AQ9Y240 323 aa12.16□□□□□ -0.46
COMMD3-211ENST00000472673 SP7Q8TDD2 431 aaPredicted RBP12.14□□□□□ -0.47
COMMD3-211ENST00000472673 PROM2Q8N271 834 aa12.13□□□□□ -0.47
COMMD3-211ENST00000472673 FXR2P51116 673 aaKnown RBP eCLIP12.1□□□□□ -0.47
COMMD3-211ENST00000472673 STAG3Q9UJ98 1225 aa12.05□□□□□ -0.48
COMMD3-211ENST00000472673 HAX1O00165 279 aa12.02□□□□□ -0.49
COMMD3-211ENST00000472673 PRR29P0C7W0 189 aa12.01□□□□□ -0.49
COMMD3-211ENST00000472673 PRKAR2AP13861 404 aaKnown RBP11.89□□□□□ -0.51
COMMD3-211ENST00000472673 EVX2Q03828 476 aa11.89□□□□□ -0.51
COMMD3-211ENST00000472673 FBXO3Q9UK99 471 aa11.88□□□□□ -0.51
COMMD3-211ENST00000472673 CHADLQ6NUI6 762 aa11.87□□□□□ -0.51
COMMD3-211ENST00000472673 CREBZFQ9NS37 354 aa11.81□□□□□ -0.52
COMMD3-211ENST00000472673 MIER1Q8N108 512 aa11.78□□□□□ -0.52
COMMD3-211ENST00000472673 PLCD3Q8N3E9 789 aa11.76□□□□□ -0.53
COMMD3-211ENST00000472673 PLEKHG5O94827 1062 aa11.74□□□□□ -0.53
COMMD3-211ENST00000472673 VASPP50552 380 aaPredicted RBP11.73□□□□□ -0.53
COMMD3-211ENST00000472673 C19orf67A6NJJ6 358 aa11.72□□□□□ -0.53
COMMD3-211ENST00000472673 FARP1Q9Y4F1 1045 aaPredicted RBP11.72□□□□□ -0.53
COMMD3-211ENST00000472673 MNX1P50219 401 aaPredicted RBP11.66□□□□□ -0.54
COMMD3-211ENST00000472673 NPM1P06748 294 aaKnown RBP eCLIP11.63□□□□□ -0.55
COMMD3-211ENST00000472673 ZBTB47Q9UFB7 747 aaPredicted RBP11.61□□□□□ -0.55
COMMD3-211ENST00000472673 KLHL34Q8N239 644 aa11.59□□□□□ -0.55
COMMD3-211ENST00000472673 GABBR2O75899 941 aa11.58□□□□□ -0.56
COMMD3-211ENST00000472673 IFNLR1Q8IU57 520 aaPredicted RBP11.55□□□□□ -0.56
COMMD3-211ENST00000472673 CD44P16070 742 aaKnown RBP11.54□□□□□ -0.56
COMMD3-211ENST00000472673 PAK3O75914 559 aaPredicted RBP11.48□□□□□ -0.57
COMMD3-211ENST00000472673 NUBP1P53384 320 aa11.47□□□□□ -0.57
COMMD3-211ENST00000472673 RASEFQ8IZ41 740 aa11.46□□□□□ -0.57
COMMD3-211ENST00000472673 TSPYL2Q9H2G4 693 aaPredicted RBP11.46□□□□□ -0.57
COMMD3-211ENST00000472673 ZRANB1Q9UGI0 708 aa11.46□□□□□ -0.57
COMMD3-211ENST00000472673 SPOCK2Q92563 424 aa11.44□□□□□ -0.58
COMMD3-211ENST00000472673 FAM212AQ96EL1 285 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms