RNA–Protein interactions for RNA: ENST00000472033.1

ABCA4-205, Transcript of ATP binding cassette subfamily A member 4, humanhuman

TSL 3

Gene ABCA4, Length 470 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4-205ENST00000472033 AEBP2Q6ZN18 517 aaPredicted RBP28.37■■■□□ 2.13
ABCA4-205ENST00000472033 CHIC1Q5VXU3 224 aa27.56■■■□□ 2
ABCA4-205ENST00000472033 PHF23Q9BUL5 403 aaPredicted RBP24.21■■□□□ 1.47
ABCA4-205ENST00000472033 SENP3Q9H4L4 574 aaPredicted RBP24.12■■□□□ 1.45
ABCA4-205ENST00000472033 FOXD1Q16676 465 aa22.39■■□□□ 1.17
ABCA4-205ENST00000472033 PLPPR3Q6T4P5 718 aa22.32■■□□□ 1.16
ABCA4-205ENST00000472033 ADRA2BP18089 450 aa21.41■■□□□ 1.02
ABCA4-205ENST00000472033 PPP6R1Q9UPN7 881 aa21.41■■□□□ 1.02
ABCA4-205ENST00000472033 PIAS4Q8N2W9 510 aaPredicted RBP21.11■□□□□ 0.97
ABCA4-205ENST00000472033 MSH5O43196 834 aa20.72■□□□□ 0.91
ABCA4-205ENST00000472033 PPP4R3CPQ6ZMV5 832 aa19.65■□□□□ 0.74
ABCA4-205ENST00000472033 SCAF1Q9H7N4 1312 aaKnown RBP19.59■□□□□ 0.73
ABCA4-205ENST00000472033 MAPK8IP2Q13387 824 aaPredicted RBP19.46■□□□□ 0.71
ABCA4-205ENST00000472033 DMRT2Q9Y5R5 561 aa19.22■□□□□ 0.67
ABCA4-205ENST00000472033 POTEDQ86YR6 584 aa19.14■□□□□ 0.65
ABCA4-205ENST00000472033 CNKSR2Q8WXI2 1034 aa19.14■□□□□ 0.65
ABCA4-205ENST00000472033 NCBP3Q53F19 620 aaKnown RBP19.11■□□□□ 0.65
ABCA4-205ENST00000472033 KCNA4P22459 653 aa19.03■□□□□ 0.64
ABCA4-205ENST00000472033 NPM3O75607 178 aaKnown RBP18.81■□□□□ 0.6
ABCA4-205ENST00000472033 RNF216Q9NWF9 866 aaPredicted RBP18.79■□□□□ 0.6
ABCA4-205ENST00000472033 HOXD11P31277 338 aaPredicted RBP18.75■□□□□ 0.59
ABCA4-205ENST00000472033 DCAF8L1A6NGE4 600 aa18.45■□□□□ 0.54
ABCA4-205ENST00000472033 DNAJC5BQ9UF47 199 aa18.24■□□□□ 0.51
ABCA4-205ENST00000472033 SLC4A1APQ9BWU0 796 aaKnown RBP18.11■□□□□ 0.49
ABCA4-205ENST00000472033 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.91■□□□□ 0.46
ABCA4-205ENST00000472033 SLC4A2P04920 1241 aa17.79■□□□□ 0.44
ABCA4-205ENST00000472033 RNF39Q9H2S5 420 aa17.74■□□□□ 0.43
ABCA4-205ENST00000472033 U3KPZ7 1027 aaPredicted RBP17.59■□□□□ 0.41
ABCA4-205ENST00000472033 FOXD4L1Q9NU39 408 aa17.55■□□□□ 0.4
ABCA4-205ENST00000472033 C1QBPQ07021 282 aaKnown RBP17.51■□□□□ 0.39
ABCA4-205ENST00000472033 ZBTB22O15209 634 aa17.49■□□□□ 0.39
ABCA4-205ENST00000472033 EHMT2Q96KQ7 1210 aa17.43■□□□□ 0.38
ABCA4-205ENST00000472033 CACNB1Q02641 598 aaPredicted RBP17.41■□□□□ 0.38
ABCA4-205ENST00000472033 MYCNP04198 464 aaPredicted RBP17.4■□□□□ 0.38
ABCA4-205ENST00000472033 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.31■□□□□ 0.36
ABCA4-205ENST00000472033 HNRNPUL2Q1KMD3 747 aaKnown RBP17.31■□□□□ 0.36
ABCA4-205ENST00000472033 CSRNP3Q8WYN3 585 aa17.26■□□□□ 0.35
ABCA4-205ENST00000472033 SAMD1Q6SPF0 538 aaPredicted RBP17.25■□□□□ 0.35
ABCA4-205ENST00000472033 APLP2Q06481 763 aa17.19■□□□□ 0.34
ABCA4-205ENST00000472033 SPINK5Q9NQ38 1064 aaPredicted RBP17.14■□□□□ 0.33
ABCA4-205ENST00000472033 CAPN15O75808 1086 aa17.1■□□□□ 0.33
ABCA4-205ENST00000472033 TRHP20396 242 aaPredicted RBP16.98■□□□□ 0.31
ABCA4-205ENST00000472033 ZNF219Q9P2Y4 722 aaPredicted RBP16.97■□□□□ 0.31
ABCA4-205ENST00000472033 ATXN8OSP0DMR3 200 aa16.95■□□□□ 0.3
ABCA4-205ENST00000472033 ATF5Q9Y2D1 282 aaPredicted RBP16.93■□□□□ 0.3
ABCA4-205ENST00000472033 DSG3P32926 999 aa16.82■□□□□ 0.28
ABCA4-205ENST00000472033 ABCB7O75027 752 aa16.77■□□□□ 0.28
ABCA4-205ENST00000472033 POLA2Q14181 598 aa16.65■□□□□ 0.26
ABCA4-205ENST00000472033 ZBTB12Q9Y330 459 aaPredicted RBP16.38■□□□□ 0.21
ABCA4-205ENST00000472033 FBLN2P98095 1184 aa16.26■□□□□ 0.19
ABCA4-205ENST00000472033 MKRN4PQ13434 485 aaPredicted RBP16.18■□□□□ 0.18
ABCA4-205ENST00000472033 OSCARQ8IYS5 282 aa16.12■□□□□ 0.17
ABCA4-205ENST00000472033 RBM42Q9BTD8 480 aaKnown RBP16.05■□□□□ 0.16
ABCA4-205ENST00000472033 SPDYE2BA6NHP3 402 aa15.91■□□□□ 0.14
ABCA4-205ENST00000472033 SPDYE6P0CI01 402 aa15.91■□□□□ 0.14
ABCA4-205ENST00000472033 SPDYE2Q495Y8 402 aa15.91■□□□□ 0.14
ABCA4-205ENST00000472033 ZNF692Q9BU19 519 aaPredicted RBP15.84■□□□□ 0.13
ABCA4-205ENST00000472033 AKT1S1Q96B36 256 aa15.81■□□□□ 0.12
ABCA4-205ENST00000472033 SPDYE4A6NLX3 237 aa15.77■□□□□ 0.12
ABCA4-205ENST00000472033 SSUH2Q9Y2M2 353 aa15.76■□□□□ 0.11
ABCA4-205ENST00000472033 REM2Q8IYK8 340 aaPredicted RBP15.66■□□□□ 0.1
ABCA4-205ENST00000472033 FKBP8Q14318 412 aa15.64■□□□□ 0.09
ABCA4-205ENST00000472033 PABPN1Q86U42 306 aaKnown RBP eCLIP15.62■□□□□ 0.09
ABCA4-205ENST00000472033 PITPNM1O00562 1244 aa15.5■□□□□ 0.07
ABCA4-205ENST00000472033 SPDYE1Q8NFV5 336 aaPredicted RBP15.49■□□□□ 0.07
ABCA4-205ENST00000472033 PROM2Q8N271 834 aa15.45■□□□□ 0.06
ABCA4-205ENST00000472033 CHRDL2Q6WN34 429 aa15.44■□□□□ 0.06
ABCA4-205ENST00000472033 CLEC11AQ9Y240 323 aa15.44■□□□□ 0.06
ABCA4-205ENST00000472033 STAG3Q9UJ98 1225 aa15.32■□□□□ 0.04
ABCA4-205ENST00000472033 PRR29P0C7W0 189 aa15.27■□□□□ 0.04
ABCA4-205ENST00000472033 NISCHQ9Y2I1 1504 aa15.25■□□□□ 0.03
ABCA4-205ENST00000472033 PIP4P2Q8N4L2 257 aa15.22■□□□□ 0.03
ABCA4-205ENST00000472033 FXR2P51116 673 aaKnown RBP eCLIP15.21■□□□□ 0.03
ABCA4-205ENST00000472033 FBXO3Q9UK99 471 aa15.13■□□□□ 0.01
ABCA4-205ENST00000472033 POTEHQ6S545 545 aa15.12■□□□□ 0.01
ABCA4-205ENST00000472033 PRKAR2AP13861 404 aaKnown RBP15.1■□□□□ 0.01
ABCA4-205ENST00000472033 CHADLQ6NUI6 762 aa15.07■□□□□ 0
ABCA4-205ENST00000472033 CREBZFQ9NS37 354 aa15.03■□□□□ -0
ABCA4-205ENST00000472033 MIER1Q8N108 512 aa14.97□□□□□ -0.01
ABCA4-205ENST00000472033 PLCD3Q8N3E9 789 aa14.94□□□□□ -0.02
ABCA4-205ENST00000472033 PLEKHG5O94827 1062 aa14.93□□□□□ -0.02
ABCA4-205ENST00000472033 VASPP50552 380 aaPredicted RBP14.92□□□□□ -0.02
ABCA4-205ENST00000472033 FARP1Q9Y4F1 1045 aaPredicted RBP14.91□□□□□ -0.02
ABCA4-205ENST00000472033 MNX1P50219 401 aaPredicted RBP14.83□□□□□ -0.04
ABCA4-205ENST00000472033 NPM1P06748 294 aaKnown RBP eCLIP14.79□□□□□ -0.04
ABCA4-205ENST00000472033 HAX1O00165 279 aa14.78□□□□□ -0.04
ABCA4-205ENST00000472033 ZBTB47Q9UFB7 747 aaPredicted RBP14.78□□□□□ -0.04
ABCA4-205ENST00000472033 KLHL34Q8N239 644 aa14.72□□□□□ -0.05
ABCA4-205ENST00000472033 C19orf67A6NJJ6 358 aa14.7□□□□□ -0.06
ABCA4-205ENST00000472033 IFNLR1Q8IU57 520 aaPredicted RBP14.69□□□□□ -0.06
ABCA4-205ENST00000472033 CD44P16070 742 aaKnown RBP14.67□□□□□ -0.06
ABCA4-205ENST00000472033 EVX2Q03828 476 aa14.61□□□□□ -0.07
ABCA4-205ENST00000472033 PAK3O75914 559 aaPredicted RBP14.59□□□□□ -0.07
ABCA4-205ENST00000472033 NUBP1P53384 320 aa14.58□□□□□ -0.08
ABCA4-205ENST00000472033 RASEFQ8IZ41 740 aa14.58□□□□□ -0.08
ABCA4-205ENST00000472033 SPOCK2Q92563 424 aa14.56□□□□□ -0.08
ABCA4-205ENST00000472033 ZRANB1Q9UGI0 708 aa14.56□□□□□ -0.08
ABCA4-205ENST00000472033 TSPYL2Q9H2G4 693 aaPredicted RBP14.54□□□□□ -0.08
ABCA4-205ENST00000472033 FAM212AQ96EL1 285 aa14.5□□□□□ -0.09
ABCA4-205ENST00000472033 SP7Q8TDD2 431 aaPredicted RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 278.8 ms