RNA–Protein interactions for RNA: ENST00000471910.1

CDHR3-208, Transcript of cadherin related family member 3, humanhuman

TSL 2

Gene CDHR3, Length 392 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-208ENST00000471910 AEBP2Q6ZN18 517 aaPredicted RBP23.33■■□□□ 1.33
CDHR3-208ENST00000471910 CHIC1Q5VXU3 224 aa23.04■■□□□ 1.28
CDHR3-208ENST00000471910 PHF23Q9BUL5 403 aaPredicted RBP20.22■□□□□ 0.83
CDHR3-208ENST00000471910 SENP3Q9H4L4 574 aaPredicted RBP19.89■□□□□ 0.77
CDHR3-208ENST00000471910 PLPPR3Q6T4P5 718 aa18.85■□□□□ 0.61
CDHR3-208ENST00000471910 FOXD1Q16676 465 aa18.37■□□□□ 0.53
CDHR3-208ENST00000471910 ADRA2BP18089 450 aa17.81■□□□□ 0.44
CDHR3-208ENST00000471910 PPP6R1Q9UPN7 881 aa17.78■□□□□ 0.44
CDHR3-208ENST00000471910 PIAS4Q8N2W9 510 aaPredicted RBP17.42■□□□□ 0.38
CDHR3-208ENST00000471910 MSH5O43196 834 aa16.96■□□□□ 0.31
CDHR3-208ENST00000471910 PPP4R3CPQ6ZMV5 832 aa16.6■□□□□ 0.25
CDHR3-208ENST00000471910 SCAF1Q9H7N4 1312 aaKnown RBP16.45■□□□□ 0.22
CDHR3-208ENST00000471910 KCNA4P22459 653 aa16.37■□□□□ 0.21
CDHR3-208ENST00000471910 NCBP3Q53F19 620 aaKnown RBP16.31■□□□□ 0.2
CDHR3-208ENST00000471910 CNKSR2Q8WXI2 1034 aa16.13■□□□□ 0.17
CDHR3-208ENST00000471910 MAPK8IP2Q13387 824 aaPredicted RBP16.1■□□□□ 0.17
CDHR3-208ENST00000471910 NPM3O75607 178 aaKnown RBP15.95■□□□□ 0.14
CDHR3-208ENST00000471910 DMRT2Q9Y5R5 561 aa15.87■□□□□ 0.13
CDHR3-208ENST00000471910 RNF216Q9NWF9 866 aaPredicted RBP15.75■□□□□ 0.11
CDHR3-208ENST00000471910 SLC4A1APQ9BWU0 796 aaKnown RBP15.69■□□□□ 0.1
CDHR3-208ENST00000471910 HOXD11P31277 338 aaPredicted RBP15.61■□□□□ 0.09
CDHR3-208ENST00000471910 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
CDHR3-208ENST00000471910 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
CDHR3-208ENST00000471910 DCAF8L1A6NGE4 600 aa15.25■□□□□ 0.03
CDHR3-208ENST00000471910 CSRNP3Q8WYN3 585 aa15.12■□□□□ 0.01
CDHR3-208ENST00000471910 FOXD4L1Q9NU39 408 aa15.07■□□□□ 0
CDHR3-208ENST00000471910 POTEDQ86YR6 584 aa15.05■□□□□ -0
CDHR3-208ENST00000471910 ZBTB22O15209 634 aa15□□□□□ -0.01
CDHR3-208ENST00000471910 SLC4A2P04920 1241 aa14.98□□□□□ -0.01
CDHR3-208ENST00000471910 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.95□□□□□ -0.02
CDHR3-208ENST00000471910 MYCNP04198 464 aaPredicted RBP14.79□□□□□ -0.04
CDHR3-208ENST00000471910 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.65□□□□□ -0.06
CDHR3-208ENST00000471910 HNRNPUL2Q1KMD3 747 aaKnown RBP14.65□□□□□ -0.06
CDHR3-208ENST00000471910 U3KPZ7 1027 aaPredicted RBP14.63□□□□□ -0.07
CDHR3-208ENST00000471910 SAMD1Q6SPF0 538 aaPredicted RBP14.57□□□□□ -0.08
CDHR3-208ENST00000471910 ATXN8OSP0DMR3 200 aa14.56□□□□□ -0.08
CDHR3-208ENST00000471910 APLP2Q06481 763 aa14.49□□□□□ -0.09
CDHR3-208ENST00000471910 RNF39Q9H2S5 420 aa14.48□□□□□ -0.09
CDHR3-208ENST00000471910 C1QBPQ07021 282 aaKnown RBP14.38□□□□□ -0.11
CDHR3-208ENST00000471910 ATF5Q9Y2D1 282 aaPredicted RBP14.28□□□□□ -0.12
CDHR3-208ENST00000471910 CAPN15O75808 1086 aa14.19□□□□□ -0.14
CDHR3-208ENST00000471910 ZNF219Q9P2Y4 722 aaPredicted RBP14.18□□□□□ -0.14
CDHR3-208ENST00000471910 SPINK5Q9NQ38 1064 aaPredicted RBP14.17□□□□□ -0.14
CDHR3-208ENST00000471910 TRHP20396 242 aaPredicted RBP14.16□□□□□ -0.14
CDHR3-208ENST00000471910 CACNB1Q02641 598 aaPredicted RBP14.05□□□□□ -0.16
CDHR3-208ENST00000471910 POLA2Q14181 598 aa13.95□□□□□ -0.18
CDHR3-208ENST00000471910 ABCB7O75027 752 aa13.89□□□□□ -0.19
CDHR3-208ENST00000471910 DSG3P32926 999 aa13.85□□□□□ -0.19
CDHR3-208ENST00000471910 FBLN2P98095 1184 aa13.82□□□□□ -0.2
CDHR3-208ENST00000471910 ZBTB12Q9Y330 459 aaPredicted RBP13.8□□□□□ -0.2
CDHR3-208ENST00000471910 FKBP8Q14318 412 aa13.71□□□□□ -0.21
CDHR3-208ENST00000471910 MKRN4PQ13434 485 aaPredicted RBP13.67□□□□□ -0.22
CDHR3-208ENST00000471910 SPDYE4A6NLX3 237 aa13.54□□□□□ -0.24
CDHR3-208ENST00000471910 OSCARQ8IYS5 282 aa13.43□□□□□ -0.26
CDHR3-208ENST00000471910 SPDYE2BA6NHP3 402 aa13.4□□□□□ -0.26
CDHR3-208ENST00000471910 SPDYE6P0CI01 402 aa13.4□□□□□ -0.26
CDHR3-208ENST00000471910 SPDYE2Q495Y8 402 aa13.4□□□□□ -0.26
CDHR3-208ENST00000471910 ZNF692Q9BU19 519 aaPredicted RBP13.39□□□□□ -0.27
CDHR3-208ENST00000471910 RBM42Q9BTD8 480 aaKnown RBP13.28□□□□□ -0.28
CDHR3-208ENST00000471910 PROM2Q8N271 834 aa13.27□□□□□ -0.29
CDHR3-208ENST00000471910 FBXO3Q9UK99 471 aa13.26□□□□□ -0.29
CDHR3-208ENST00000471910 SSUH2Q9Y2M2 353 aa13.26□□□□□ -0.29
CDHR3-208ENST00000471910 PABPN1Q86U42 306 aaKnown RBP eCLIP13.19□□□□□ -0.3
CDHR3-208ENST00000471910 AKT1S1Q96B36 256 aa13.13□□□□□ -0.31
CDHR3-208ENST00000471910 STAG3Q9UJ98 1225 aa13.08□□□□□ -0.32
CDHR3-208ENST00000471910 VASPP50552 380 aaPredicted RBP12.99□□□□□ -0.33
CDHR3-208ENST00000471910 SPDYE1Q8NFV5 336 aaPredicted RBP12.98□□□□□ -0.33
CDHR3-208ENST00000471910 REM2Q8IYK8 340 aaPredicted RBP12.96□□□□□ -0.33
CDHR3-208ENST00000471910 CLEC11AQ9Y240 323 aa12.91□□□□□ -0.34
CDHR3-208ENST00000471910 PLCD3Q8N3E9 789 aa12.88□□□□□ -0.35
CDHR3-208ENST00000471910 PLEKHG5O94827 1062 aa12.87□□□□□ -0.35
CDHR3-208ENST00000471910 MIER1Q8N108 512 aa12.86□□□□□ -0.35
CDHR3-208ENST00000471910 AMER1Q5JTC6 1135 aaPredicted RBP12.85□□□□□ -0.35
CDHR3-208ENST00000471910 PRR29P0C7W0 189 aa12.84□□□□□ -0.35
CDHR3-208ENST00000471910 KLHL34Q8N239 644 aa12.81□□□□□ -0.36
CDHR3-208ENST00000471910 PITPNM1O00562 1244 aa12.79□□□□□ -0.36
CDHR3-208ENST00000471910 IFNLR1Q8IU57 520 aaPredicted RBP12.79□□□□□ -0.36
CDHR3-208ENST00000471910 ZBTB47Q9UFB7 747 aaPredicted RBP12.76□□□□□ -0.37
CDHR3-208ENST00000471910 RTN4Q9NQC3 1192 aaKnown RBP12.72□□□□□ -0.37
CDHR3-208ENST00000471910 SPOCK2Q92563 424 aa12.69□□□□□ -0.38
CDHR3-208ENST00000471910 CREBZFQ9NS37 354 aa12.63□□□□□ -0.39
CDHR3-208ENST00000471910 CHRDL2Q6WN34 429 aa12.6□□□□□ -0.39
CDHR3-208ENST00000471910 NPM1P06748 294 aaKnown RBP eCLIP12.54□□□□□ -0.4
CDHR3-208ENST00000471910 FXR2P51116 673 aaKnown RBP eCLIP12.53□□□□□ -0.4
CDHR3-208ENST00000471910 PRKAR2AP13861 404 aaKnown RBP12.51□□□□□ -0.41
CDHR3-208ENST00000471910 CHADLQ6NUI6 762 aa12.51□□□□□ -0.41
CDHR3-208ENST00000471910 MNX1P50219 401 aaPredicted RBP12.48□□□□□ -0.41
CDHR3-208ENST00000471910 CIZ1Q9ULV3 898 aaPredicted RBP12.47□□□□□ -0.41
CDHR3-208ENST00000471910 PIP4P2Q8N4L2 257 aa12.46□□□□□ -0.41
CDHR3-208ENST00000471910 GSE1Q14687 1217 aa12.45□□□□□ -0.42
CDHR3-208ENST00000471910 FARP1Q9Y4F1 1045 aaPredicted RBP12.44□□□□□ -0.42
CDHR3-208ENST00000471910 NUBP1P53384 320 aa12.43□□□□□ -0.42
CDHR3-208ENST00000471910 PKD2Q13563 968 aa12.42□□□□□ -0.42
CDHR3-208ENST00000471910 DCAF8Q5TAQ9 597 aa12.42□□□□□ -0.42
CDHR3-208ENST00000471910 FAM212AQ96EL1 285 aa12.41□□□□□ -0.42
CDHR3-208ENST00000471910 ECM2O94769 699 aaPredicted RBP12.4□□□□□ -0.42
CDHR3-208ENST00000471910 TRIM41Q8WV44 630 aa12.38□□□□□ -0.43
CDHR3-208ENST00000471910 RASEFQ8IZ41 740 aa12.33□□□□□ -0.44
CDHR3-208ENST00000471910 PAK3O75914 559 aaPredicted RBP12.3□□□□□ -0.44
CDHR3-208ENST00000471910 DCAF8L2P0C7V8 631 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms