RNA–Protein interactions for RNA: ENST00000471635.5

RBM39-228, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-228ENST00000471635 AEBP2Q6ZN18 517 aaPredicted RBP29.55■■■□□ 2.32
RBM39-228ENST00000471635 CHIC1Q5VXU3 224 aa27.73■■■□□ 2.03
RBM39-228ENST00000471635 SENP3Q9H4L4 574 aaPredicted RBP25.43■■□□□ 1.66
RBM39-228ENST00000471635 PHF23Q9BUL5 403 aaPredicted RBP24.93■■□□□ 1.58
RBM39-228ENST00000471635 FOXD1Q16676 465 aa23.69■■□□□ 1.38
RBM39-228ENST00000471635 POTEDQ86YR6 584 aa22.93■■□□□ 1.26
RBM39-228ENST00000471635 MSH5O43196 834 aa22.51■■□□□ 1.19
RBM39-228ENST00000471635 PIAS4Q8N2W9 510 aaPredicted RBP22.02■■□□□ 1.12
RBM39-228ENST00000471635 PLPPR3Q6T4P5 718 aa21.76■■□□□ 1.07
RBM39-228ENST00000471635 PPP6R1Q9UPN7 881 aa21.62■■□□□ 1.05
RBM39-228ENST00000471635 ADRA2BP18089 450 aa21.52■■□□□ 1.04
RBM39-228ENST00000471635 DMRT2Q9Y5R5 561 aa20.04■□□□□ 0.8
RBM39-228ENST00000471635 MAPK8IP2Q13387 824 aaPredicted RBP19.93■□□□□ 0.78
RBM39-228ENST00000471635 SCAF1Q9H7N4 1312 aaKnown RBP19.84■□□□□ 0.77
RBM39-228ENST00000471635 CACNB1Q02641 598 aaPredicted RBP19.63■□□□□ 0.73
RBM39-228ENST00000471635 DCAF8L1A6NGE4 600 aa19.22■□□□□ 0.67
RBM39-228ENST00000471635 RNF39Q9H2S5 420 aa19.1■□□□□ 0.65
RBM39-228ENST00000471635 HOXD11P31277 338 aaPredicted RBP19.06■□□□□ 0.64
RBM39-228ENST00000471635 PPP4R3CPQ6ZMV5 832 aa18.94■□□□□ 0.62
RBM39-228ENST00000471635 C1QBPQ07021 282 aaKnown RBP18.83■□□□□ 0.6
RBM39-228ENST00000471635 CNKSR2Q8WXI2 1034 aa18.77■□□□□ 0.6
RBM39-228ENST00000471635 RNF216Q9NWF9 866 aaPredicted RBP18.77■□□□□ 0.6
RBM39-228ENST00000471635 DNAJC5BQ9UF47 199 aa18.61■□□□□ 0.57
RBM39-228ENST00000471635 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.16■□□□□ 0.55e-12■□□□□ 9.2
RBM39-228ENST00000471635 NCBP3Q53F19 620 aaKnown RBP18.1■□□□□ 0.49
RBM39-228ENST00000471635 POTEHQ6S545 545 aa17.87■□□□□ 0.45
RBM39-228ENST00000471635 NPM3O75607 178 aaKnown RBP17.76■□□□□ 0.43
RBM39-228ENST00000471635 U3KPZ7 1027 aaPredicted RBP17.68■□□□□ 0.42
RBM39-228ENST00000471635 DSG3P32926 999 aa17.66■□□□□ 0.42
RBM39-228ENST00000471635 CAPN15O75808 1086 aa17.62■□□□□ 0.41
RBM39-228ENST00000471635 SPINK5Q9NQ38 1064 aaPredicted RBP17.58■□□□□ 0.4
RBM39-228ENST00000471635 APLP2Q06481 763 aa17.26■□□□□ 0.35
RBM39-228ENST00000471635 ZNF219Q9P2Y4 722 aaPredicted RBP17.21■□□□□ 0.35
RBM39-228ENST00000471635 TRHP20396 242 aaPredicted RBP17.17■□□□□ 0.34
RBM39-228ENST00000471635 ABCB7O75027 752 aa17.12■□□□□ 0.33
RBM39-228ENST00000471635 SLC4A2P04920 1241 aa17.1■□□□□ 0.33
RBM39-228ENST00000471635 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
RBM39-228ENST00000471635 HNRNPUL2Q1KMD3 747 aaKnown RBP17.08■□□□□ 0.32
RBM39-228ENST00000471635 RBM42Q9BTD8 480 aaKnown RBP16.96■□□□□ 0.31
RBM39-228ENST00000471635 SAMD1Q6SPF0 538 aaPredicted RBP16.93■□□□□ 0.3
RBM39-228ENST00000471635 KCNA4P22459 653 aa16.85■□□□□ 0.29
RBM39-228ENST00000471635 CHRDL2Q6WN34 429 aa16.77■□□□□ 0.28
RBM39-228ENST00000471635 POLA2Q14181 598 aa16.57■□□□□ 0.24
RBM39-228ENST00000471635 MYCNP04198 464 aaPredicted RBP16.5■□□□□ 0.23
RBM39-228ENST00000471635 SP7Q8TDD2 431 aaPredicted RBP16.48■□□□□ 0.23
RBM39-228ENST00000471635 AKT1S1Q96B36 256 aa16.39■□□□□ 0.21
RBM39-228ENST00000471635 ZBTB12Q9Y330 459 aaPredicted RBP16.31■□□□□ 0.2
RBM39-228ENST00000471635 PIP4P2Q8N4L2 257 aa16.21■□□□□ 0.19
RBM39-228ENST00000471635 REM2Q8IYK8 340 aaPredicted RBP16.2■□□□□ 0.18
RBM39-228ENST00000471635 HAX1O00165 279 aa16.09■□□□□ 0.17
RBM39-228ENST00000471635 OSCARQ8IYS5 282 aa16.08■□□□□ 0.16
RBM39-228ENST00000471635 ATF5Q9Y2D1 282 aaPredicted RBP16.05■□□□□ 0.16
RBM39-228ENST00000471635 PITPNM1O00562 1244 aa16.03■□□□□ 0.16
RBM39-228ENST00000471635 FXR2P51116 673 aaKnown RBP eCLIP16.03■□□□□ 0.16
RBM39-228ENST00000471635 FOXD4L1Q9NU39 408 aa15.99■□□□□ 0.15
RBM39-228ENST00000471635 SLC4A1APQ9BWU0 796 aaKnown RBP15.82■□□□□ 0.12
RBM39-228ENST00000471635 EVX2Q03828 476 aa15.76■□□□□ 0.11
RBM39-228ENST00000471635 SPDYE2BA6NHP3 402 aa15.71■□□□□ 0.11
RBM39-228ENST00000471635 SPDYE6P0CI01 402 aa15.71■□□□□ 0.11
RBM39-228ENST00000471635 SPDYE2Q495Y8 402 aa15.71■□□□□ 0.11
RBM39-228ENST00000471635 PRKAR2AP13861 404 aaKnown RBP15.62■□□□□ 0.09
RBM39-228ENST00000471635 FBLN2P98095 1184 aa15.6■□□□□ 0.09
RBM39-228ENST00000471635 ATXN8OSP0DMR3 200 aa15.59■□□□□ 0.09
RBM39-228ENST00000471635 SPDYE1Q8NFV5 336 aaPredicted RBP15.58■□□□□ 0.08
RBM39-228ENST00000471635 C19orf67A6NJJ6 358 aa15.54■□□□□ 0.08
RBM39-228ENST00000471635 CLEC11AQ9Y240 323 aa15.52■□□□□ 0.08
RBM39-228ENST00000471635 ZBTB22O15209 634 aa15.46■□□□□ 0.07
RBM39-228ENST00000471635 GABBR2O75899 941 aa15.43■□□□□ 0.06
RBM39-228ENST00000471635 LHX8Q68G74 356 aa15.42■□□□□ 0.06
RBM39-228ENST00000471635 SSUH2Q9Y2M2 353 aa15.4■□□□□ 0.06
RBM39-228ENST00000471635 ZNF692Q9BU19 519 aaPredicted RBP15.38■□□□□ 0.05
RBM39-228ENST00000471635 MKRN4PQ13434 485 aaPredicted RBP15.31■□□□□ 0.04
RBM39-228ENST00000471635 CHADLQ6NUI6 762 aa15.26■□□□□ 0.03
RBM39-228ENST00000471635 PRR29P0C7W0 189 aa15.21■□□□□ 0.03
RBM39-228ENST00000471635 CLCN6P51797 869 aa15.12■□□□□ 0.01
RBM39-228ENST00000471635 PABPN1Q86U42 306 aaKnown RBP eCLIP15.12■□□□□ 0.019e-8■□□□□ 8.6
RBM39-228ENST00000471635 CD44P16070 742 aaKnown RBP15.1■□□□□ 0.01
RBM39-228ENST00000471635 POTEIP0CG38 1075 aa15.06■□□□□ 0
RBM39-228ENST00000471635 FARP1Q9Y4F1 1045 aaPredicted RBP15.02■□□□□ -0
RBM39-228ENST00000471635 DCBLD2Q96PD2 775 aa14.94□□□□□ -0.02
RBM39-228ENST00000471635 PLSCR2Q9NRY7 297 aa14.93□□□□□ -0.02
RBM39-228ENST00000471635 ZNF579Q8NAF0 562 aaKnown RBP14.87□□□□□ -0.03
RBM39-228ENST00000471635 EHMT2Q96KQ7 1210 aa14.84□□□□□ -0.03
RBM39-228ENST00000471635 CSRNP3Q8WYN3 585 aa14.79□□□□□ -0.04
RBM39-228ENST00000471635 ZRANB1Q9UGI0 708 aa14.77□□□□□ -0.05
RBM39-228ENST00000471635 GALR2O43603 387 aaPredicted RBP14.65□□□□□ -0.06
RBM39-228ENST00000471635 OTUD5Q96G74 571 aa14.65□□□□□ -0.06
RBM39-228ENST00000471635 CREBZFQ9NS37 354 aa14.65□□□□□ -0.06
RBM39-228ENST00000471635 STAG3Q9UJ98 1225 aa14.65□□□□□ -0.06
RBM39-228ENST00000471635 PAK3O75914 559 aaPredicted RBP14.6□□□□□ -0.07
RBM39-228ENST00000471635 POTEMA6NI47 508 aa14.55□□□□□ -0.08
RBM39-228ENST00000471635 POTEB2H3BUK9 544 aa14.54□□□□□ -0.08
RBM39-228ENST00000471635 POTEGQ6S5H5 508 aa14.5□□□□□ -0.09
RBM39-228ENST00000471635 PHF12Q96QT6 1004 aa14.49□□□□□ -0.09
RBM39-228ENST00000471635 NPM1P06748 294 aaKnown RBP eCLIP14.44□□□□□ -0.1
RBM39-228ENST00000471635 PCDH10Q9P2E7 1040 aa14.44□□□□□ -0.1
RBM39-228ENST00000471635 PELP1Q8IZL8 1130 aaKnown RBP14.4□□□□□ -0.1
RBM39-228ENST00000471635 METRNQ9UJH8 293 aa14.37□□□□□ -0.11
RBM39-228ENST00000471635 ASTLQ6HA08 431 aaPredicted RBP14.36□□□□□ -0.11
RBM39-228ENST00000471635 SLC39A7Q92504 469 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms