RNA–Protein interactions for RNA: ENST00000471372.1

SMC5-202, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-202ENST00000471372 AEBP2Q6ZN18 517 aaPredicted RBP26.95■■□□□ 1.9
SMC5-202ENST00000471372 CHIC1Q5VXU3 224 aa25.58■■□□□ 1.69
SMC5-202ENST00000471372 SENP3Q9H4L4 574 aaPredicted RBP23.04■■□□□ 1.28
SMC5-202ENST00000471372 PHF23Q9BUL5 403 aaPredicted RBP22.72■■□□□ 1.23
SMC5-202ENST00000471372 FOXD1Q16676 465 aa21.45■■□□□ 1.02
SMC5-202ENST00000471372 PLPPR3Q6T4P5 718 aa20.45■□□□□ 0.86
SMC5-202ENST00000471372 MSH5O43196 834 aa20.11■□□□□ 0.81
SMC5-202ENST00000471372 PIAS4Q8N2W9 510 aaPredicted RBP20.07■□□□□ 0.8
SMC5-202ENST00000471372 PPP6R1Q9UPN7 881 aa20.02■□□□□ 0.8
SMC5-202ENST00000471372 ADRA2BP18089 450 aa19.98■□□□□ 0.79
SMC5-202ENST00000471372 POTEDQ86YR6 584 aa19.66■□□□□ 0.74
SMC5-202ENST00000471372 KCNA4P22459 653 aa18.89■□□□□ 0.61
SMC5-202ENST00000471372 EHMT2Q96KQ7 1210 aa18.75■□□□□ 0.59
SMC5-202ENST00000471372 MAPK8IP2Q13387 824 aaPredicted RBP18.35■□□□□ 0.53
SMC5-202ENST00000471372 SCAF1Q9H7N4 1312 aaKnown RBP18.3■□□□□ 0.52
SMC5-202ENST00000471372 DMRT2Q9Y5R5 561 aa18.25■□□□□ 0.51
SMC5-202ENST00000471372 PPP4R3CPQ6ZMV5 832 aa18.19■□□□□ 0.5
SMC5-202ENST00000471372 SLC4A1APQ9BWU0 796 aaKnown RBP18.11■□□□□ 0.49
SMC5-202ENST00000471372 CSRNP3Q8WYN3 585 aa18.07■□□□□ 0.48
SMC5-202ENST00000471372 NCBP3Q53F19 620 aaKnown RBP17.9■□□□□ 0.46
SMC5-202ENST00000471372 NPM3O75607 178 aaKnown RBP17.74■□□□□ 0.43
SMC5-202ENST00000471372 CNKSR2Q8WXI2 1034 aa17.59■□□□□ 0.41
SMC5-202ENST00000471372 DCAF8L1A6NGE4 600 aa17.56■□□□□ 0.4
SMC5-202ENST00000471372 HOXD11P31277 338 aaPredicted RBP17.55■□□□□ 0.4
SMC5-202ENST00000471372 ZBTB22O15209 634 aa17.44■□□□□ 0.38
SMC5-202ENST00000471372 RNF216Q9NWF9 866 aaPredicted RBP17.43■□□□□ 0.38
SMC5-202ENST00000471372 CACNB1Q02641 598 aaPredicted RBP17.29■□□□□ 0.36
SMC5-202ENST00000471372 RNF39Q9H2S5 420 aa17.14■□□□□ 0.33
SMC5-202ENST00000471372 FOXD4L1Q9NU39 408 aa17.04■□□□□ 0.32
SMC5-202ENST00000471372 DNAJC5BQ9UF47 199 aa16.98■□□□□ 0.31
SMC5-202ENST00000471372 C1QBPQ07021 282 aaKnown RBP16.9■□□□□ 0.3
SMC5-202ENST00000471372 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.78■□□□□ 0.28
SMC5-202ENST00000471372 SLC4A2P04920 1241 aa16.54■□□□□ 0.24
SMC5-202ENST00000471372 RTN4Q9NQC3 1192 aaKnown RBP16.52■□□□□ 0.24
SMC5-202ENST00000471372 SLC24A1O60721 1099 aa16.41■□□□□ 0.22
SMC5-202ENST00000471372 AMER1Q5JTC6 1135 aaPredicted RBP16.41■□□□□ 0.22
SMC5-202ENST00000471372 U3KPZ7 1027 aaPredicted RBP16.39■□□□□ 0.21
SMC5-202ENST00000471372 MYCNP04198 464 aaPredicted RBP16.31■□□□□ 0.2
SMC5-202ENST00000471372 ATXN8OSP0DMR3 200 aa16.3■□□□□ 0.2
SMC5-202ENST00000471372 FKBP8Q14318 412 aa16.26■□□□□ 0.19
SMC5-202ENST00000471372 CAPN15O75808 1086 aa16.17■□□□□ 0.18
SMC5-202ENST00000471372 SPINK5Q9NQ38 1064 aaPredicted RBP16.16■□□□□ 0.18
SMC5-202ENST00000471372 DSG3P32926 999 aa16.04■□□□□ 0.16
SMC5-202ENST00000471372 APLP2Q06481 763 aa15.97■□□□□ 0.15
SMC5-202ENST00000471372 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.94■□□□□ 0.14
SMC5-202ENST00000471372 HNRNPUL2Q1KMD3 747 aaKnown RBP15.94■□□□□ 0.14
SMC5-202ENST00000471372 ATF5Q9Y2D1 282 aaPredicted RBP15.92■□□□□ 0.14
SMC5-202ENST00000471372 TRHP20396 242 aaPredicted RBP15.9■□□□□ 0.14
SMC5-202ENST00000471372 ZNF219Q9P2Y4 722 aaPredicted RBP15.87■□□□□ 0.13
SMC5-202ENST00000471372 SAMD1Q6SPF0 538 aaPredicted RBP15.84■□□□□ 0.13
SMC5-202ENST00000471372 ABCB7O75027 752 aa15.78■□□□□ 0.12
SMC5-202ENST00000471372 POLA2Q14181 598 aa15.45■□□□□ 0.06
SMC5-202ENST00000471372 POTEHQ6S545 545 aa15.41■□□□□ 0.06
SMC5-202ENST00000471372 RBM42Q9BTD8 480 aaKnown RBP15.34■□□□□ 0.05
SMC5-202ENST00000471372 FBXO3Q9UK99 471 aa15.32■□□□□ 0.04
SMC5-202ENST00000471372 SPDYE4A6NLX3 237 aa15.31■□□□□ 0.04
SMC5-202ENST00000471372 MKRN4PQ13434 485 aaPredicted RBP15.26■□□□□ 0.03
SMC5-202ENST00000471372 PROM2Q8N271 834 aa15.19■□□□□ 0.02
SMC5-202ENST00000471372 VASPP50552 380 aaPredicted RBP15.17■□□□□ 0.02
SMC5-202ENST00000471372 PLCB2Q00722 1185 aa15.16■□□□□ 0.02
SMC5-202ENST00000471372 ZBTB12Q9Y330 459 aaPredicted RBP15.16■□□□□ 0.02
SMC5-202ENST00000471372 IFNLR1Q8IU57 520 aaPredicted RBP15.07■□□□□ 0
SMC5-202ENST00000471372 FBLN2P98095 1184 aa15.05■□□□□ -0
SMC5-202ENST00000471372 CHRDL2Q6WN34 429 aa15.01□□□□□ -0.01
SMC5-202ENST00000471372 DCAF8L2P0C7V8 631 aa14.99□□□□□ -0.01
SMC5-202ENST00000471372 HAP1P54257 671 aaPredicted RBP14.97□□□□□ -0.01
SMC5-202ENST00000471372 OSCARQ8IYS5 282 aa14.97□□□□□ -0.01
SMC5-202ENST00000471372 AKT1S1Q96B36 256 aa14.96□□□□□ -0.01
SMC5-202ENST00000471372 PKD2Q13563 968 aa14.93□□□□□ -0.02
SMC5-202ENST00000471372 REM2Q8IYK8 340 aaPredicted RBP14.82□□□□□ -0.04
SMC5-202ENST00000471372 BCANQ96GW7 911 aa14.72□□□□□ -0.05
SMC5-202ENST00000471372 VSIG10Q8N0Z9 540 aa14.71□□□□□ -0.05
SMC5-202ENST00000471372 SPDYE2BA6NHP3 402 aa14.67□□□□□ -0.06
SMC5-202ENST00000471372 PITPNM1O00562 1244 aa14.67□□□□□ -0.06
SMC5-202ENST00000471372 SPDYE6P0CI01 402 aa14.67□□□□□ -0.06
SMC5-202ENST00000471372 PRKCSHP14314 528 aaPredicted RBP14.67□□□□□ -0.06
SMC5-202ENST00000471372 SPDYE2Q495Y8 402 aa14.67□□□□□ -0.06
SMC5-202ENST00000471372 KLHL34Q8N239 644 aa14.67□□□□□ -0.06
SMC5-202ENST00000471372 SPOCK2Q92563 424 aa14.66□□□□□ -0.06
SMC5-202ENST00000471372 ECM2O94769 699 aaPredicted RBP14.63□□□□□ -0.07
SMC5-202ENST00000471372 PIP4P2Q8N4L2 257 aa14.63□□□□□ -0.07
SMC5-202ENST00000471372 NPM1P06748 294 aaKnown RBP eCLIP14.61□□□□□ -0.07
SMC5-202ENST00000471372 BBXQ8WY36 941 aaPredicted RBP14.6□□□□□ -0.07
SMC5-202ENST00000471372 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.59□□□□□ -0.07
SMC5-202ENST00000471372 TAOK2Q9UL54 1235 aa14.58□□□□□ -0.08
SMC5-202ENST00000471372 KDM2AQ9Y2K7 1162 aa14.57□□□□□ -0.08
SMC5-202ENST00000471372 PAXIP1Q6ZW49 1069 aaPredicted RBP14.56□□□□□ -0.08
SMC5-202ENST00000471372 FXR2P51116 673 aaKnown RBP eCLIP14.53□□□□□ -0.08
SMC5-202ENST00000471372 ZNF692Q9BU19 519 aaPredicted RBP14.53□□□□□ -0.08
SMC5-202ENST00000471372 CFAP44Q96MT7 982 aa14.52□□□□□ -0.09
SMC5-202ENST00000471372 RGL2O15211 777 aa14.51□□□□□ -0.09
SMC5-202ENST00000471372 STAG3Q9UJ98 1225 aa14.51□□□□□ -0.09
SMC5-202ENST00000471372 PLCD3Q8N3E9 789 aa14.5□□□□□ -0.09
SMC5-202ENST00000471372 SSUH2Q9Y2M2 353 aa14.45□□□□□ -0.1
SMC5-202ENST00000471372 SP7Q8TDD2 431 aaPredicted RBP14.44□□□□□ -0.1
SMC5-202ENST00000471372 MIER1Q8N108 512 aa14.42□□□□□ -0.1
SMC5-202ENST00000471372 SPDYE1Q8NFV5 336 aaPredicted RBP14.42□□□□□ -0.1
SMC5-202ENST00000471372 CLEC11AQ9Y240 323 aa14.42□□□□□ -0.1
SMC5-202ENST00000471372 HAX1O00165 279 aa14.4□□□□□ -0.1
SMC5-202ENST00000471372 PABPN1Q86U42 306 aaKnown RBP eCLIP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms