RNA–Protein interactions for RNA: ENST00000470791.1

CPS1-206, Transcript of carbamoyl-phosphate synthase 1, humanhuman

TSL 2

Gene CPS1, Length 501 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPS1-206ENST00000470791 AEBP2Q6ZN18 517 aaPredicted RBP29.04■■■□□ 2.24
CPS1-206ENST00000470791 CHIC1Q5VXU3 224 aa27.8■■■□□ 2.04
CPS1-206ENST00000470791 SENP3Q9H4L4 574 aaPredicted RBP24.76■■□□□ 1.55
CPS1-206ENST00000470791 PHF23Q9BUL5 403 aaPredicted RBP24.43■■□□□ 1.5
CPS1-206ENST00000470791 FOXD1Q16676 465 aa23.03■■□□□ 1.28
CPS1-206ENST00000470791 PLPPR3Q6T4P5 718 aa22.3■■□□□ 1.16
CPS1-206ENST00000470791 PPP6R1Q9UPN7 881 aa21.66■■□□□ 1.06
CPS1-206ENST00000470791 ADRA2BP18089 450 aa21.61■■□□□ 1.05
CPS1-206ENST00000470791 PIAS4Q8N2W9 510 aaPredicted RBP21.58■■□□□ 1.05
CPS1-206ENST00000470791 MSH5O43196 834 aa21.5■■□□□ 1.03
CPS1-206ENST00000470791 POTEDQ86YR6 584 aa20.61■□□□□ 0.89
CPS1-206ENST00000470791 SCAF1Q9H7N4 1312 aaKnown RBP19.78■□□□□ 0.76
CPS1-206ENST00000470791 MAPK8IP2Q13387 824 aaPredicted RBP19.77■□□□□ 0.76
CPS1-206ENST00000470791 DMRT2Q9Y5R5 561 aa19.66■□□□□ 0.74
CPS1-206ENST00000470791 PPP4R3CPQ6ZMV5 832 aa19.56■□□□□ 0.72
CPS1-206ENST00000470791 CNKSR2Q8WXI2 1034 aa19.16■□□□□ 0.66
CPS1-206ENST00000470791 HOXD11P31277 338 aaPredicted RBP19.03■□□□□ 0.64
CPS1-206ENST00000470791 RNF216Q9NWF9 866 aaPredicted RBP18.94■□□□□ 0.62
CPS1-206ENST00000470791 NCBP3Q53F19 620 aaKnown RBP18.88■□□□□ 0.61
CPS1-206ENST00000470791 DCAF8L1A6NGE4 600 aa18.81■□□□□ 0.6
CPS1-206ENST00000470791 NPM3O75607 178 aaKnown RBP18.61■□□□□ 0.57
CPS1-206ENST00000470791 KCNA4P22459 653 aa18.43■□□□□ 0.54
CPS1-206ENST00000470791 RNF39Q9H2S5 420 aa18.36■□□□□ 0.53
CPS1-206ENST00000470791 DNAJC5BQ9UF47 199 aa18.35■□□□□ 0.53
CPS1-206ENST00000470791 CACNB1Q02641 598 aaPredicted RBP18.29■□□□□ 0.52
CPS1-206ENST00000470791 C1QBPQ07021 282 aaKnown RBP18.1■□□□□ 0.49
CPS1-206ENST00000470791 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.1■□□□□ 0.49
CPS1-206ENST00000470791 U3KPZ7 1027 aaPredicted RBP17.77■□□□□ 0.44
CPS1-206ENST00000470791 SLC4A2P04920 1241 aa17.71■□□□□ 0.43
CPS1-206ENST00000470791 SLC4A1APQ9BWU0 796 aaKnown RBP17.45■□□□□ 0.38
CPS1-206ENST00000470791 SPINK5Q9NQ38 1064 aaPredicted RBP17.43■□□□□ 0.38
CPS1-206ENST00000470791 CAPN15O75808 1086 aa17.39■□□□□ 0.37
CPS1-206ENST00000470791 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.34■□□□□ 0.37
CPS1-206ENST00000470791 HNRNPUL2Q1KMD3 747 aaKnown RBP17.34■□□□□ 0.37
CPS1-206ENST00000470791 APLP2Q06481 763 aa17.32■□□□□ 0.36
CPS1-206ENST00000470791 DSG3P32926 999 aa17.25■□□□□ 0.35
CPS1-206ENST00000470791 SAMD1Q6SPF0 538 aaPredicted RBP17.25■□□□□ 0.35
CPS1-206ENST00000470791 MYCNP04198 464 aaPredicted RBP17.24■□□□□ 0.35
CPS1-206ENST00000470791 FOXD4L1Q9NU39 408 aa17.17■□□□□ 0.34
CPS1-206ENST00000470791 ZNF219Q9P2Y4 722 aaPredicted RBP17.17■□□□□ 0.34
CPS1-206ENST00000470791 TRHP20396 242 aaPredicted RBP17.15■□□□□ 0.34
CPS1-206ENST00000470791 ABCB7O75027 752 aa17.01■□□□□ 0.31
CPS1-206ENST00000470791 ZBTB22O15209 634 aa16.96■□□□□ 0.31
CPS1-206ENST00000470791 ATF5Q9Y2D1 282 aaPredicted RBP16.77■□□□□ 0.28
CPS1-206ENST00000470791 POLA2Q14181 598 aa16.72■□□□□ 0.27
CPS1-206ENST00000470791 ATXN8OSP0DMR3 200 aa16.61■□□□□ 0.25
CPS1-206ENST00000470791 RBM42Q9BTD8 480 aaKnown RBP16.49■□□□□ 0.23
CPS1-206ENST00000470791 ZBTB12Q9Y330 459 aaPredicted RBP16.47■□□□□ 0.23
CPS1-206ENST00000470791 CSRNP3Q8WYN3 585 aa16.34■□□□□ 0.21
CPS1-206ENST00000470791 EHMT2Q96KQ7 1210 aa16.26■□□□□ 0.19
CPS1-206ENST00000470791 OSCARQ8IYS5 282 aa16.24■□□□□ 0.19
CPS1-206ENST00000470791 POTEHQ6S545 545 aa16.19■□□□□ 0.18
CPS1-206ENST00000470791 FBLN2P98095 1184 aa16.13■□□□□ 0.17
CPS1-206ENST00000470791 AKT1S1Q96B36 256 aa16.13■□□□□ 0.17
CPS1-206ENST00000470791 MKRN4PQ13434 485 aaPredicted RBP16.04■□□□□ 0.16
CPS1-206ENST00000470791 CHRDL2Q6WN34 429 aa16.01■□□□□ 0.15
CPS1-206ENST00000470791 SPDYE2BA6NHP3 402 aa15.97■□□□□ 0.15
CPS1-206ENST00000470791 SPDYE6P0CI01 402 aa15.97■□□□□ 0.15
CPS1-206ENST00000470791 SPDYE2Q495Y8 402 aa15.97■□□□□ 0.15
CPS1-206ENST00000470791 REM2Q8IYK8 340 aaPredicted RBP15.96■□□□□ 0.15
CPS1-206ENST00000470791 PITPNM1O00562 1244 aa15.81■□□□□ 0.12
CPS1-206ENST00000470791 SSUH2Q9Y2M2 353 aa15.79■□□□□ 0.12
CPS1-206ENST00000470791 ZNF692Q9BU19 519 aaPredicted RBP15.76■□□□□ 0.11
CPS1-206ENST00000470791 PIP4P2Q8N4L2 257 aa15.68■□□□□ 0.1
CPS1-206ENST00000470791 SPDYE1Q8NFV5 336 aaPredicted RBP15.63■□□□□ 0.09
CPS1-206ENST00000470791 FXR2P51116 673 aaKnown RBP eCLIP15.62■□□□□ 0.09
CPS1-206ENST00000470791 PABPN1Q86U42 306 aaKnown RBP eCLIP15.56■□□□□ 0.08
CPS1-206ENST00000470791 CLEC11AQ9Y240 323 aa15.56■□□□□ 0.08
CPS1-206ENST00000470791 PRKAR2AP13861 404 aaKnown RBP15.38■□□□□ 0.05
CPS1-206ENST00000470791 SPDYE4A6NLX3 237 aa15.37■□□□□ 0.05
CPS1-206ENST00000470791 PRR29P0C7W0 189 aa15.33■□□□□ 0.04
CPS1-206ENST00000470791 HAX1O00165 279 aa15.3■□□□□ 0.04
CPS1-206ENST00000470791 SP7Q8TDD2 431 aaPredicted RBP15.28■□□□□ 0.04
CPS1-206ENST00000470791 CHADLQ6NUI6 762 aa15.25■□□□□ 0.03
CPS1-206ENST00000470791 STAG3Q9UJ98 1225 aa15.19■□□□□ 0.02
CPS1-206ENST00000470791 EVX2Q03828 476 aa15.13■□□□□ 0.01
CPS1-206ENST00000470791 C19orf67A6NJJ6 358 aa15.12■□□□□ 0.01
CPS1-206ENST00000470791 PROM2Q8N271 834 aa15.08■□□□□ 0
CPS1-206ENST00000470791 FARP1Q9Y4F1 1045 aaPredicted RBP15.05■□□□□ -0
CPS1-206ENST00000470791 CREBZFQ9NS37 354 aa15.03■□□□□ -0
CPS1-206ENST00000470791 CD44P16070 742 aaKnown RBP14.92□□□□□ -0.02
CPS1-206ENST00000470791 GABBR2O75899 941 aa14.82□□□□□ -0.04
CPS1-206ENST00000470791 FKBP8Q14318 412 aa14.82□□□□□ -0.04
CPS1-206ENST00000470791 MNX1P50219 401 aaPredicted RBP14.8□□□□□ -0.04
CPS1-206ENST00000470791 NPM1P06748 294 aaKnown RBP eCLIP14.75□□□□□ -0.05
CPS1-206ENST00000470791 ZNF579Q8NAF0 562 aaKnown RBP14.73□□□□□ -0.05
CPS1-206ENST00000470791 ZRANB1Q9UGI0 708 aa14.73□□□□□ -0.05
CPS1-206ENST00000470791 CLCN6P51797 869 aa14.68□□□□□ -0.06
CPS1-206ENST00000470791 PAK3O75914 559 aaPredicted RBP14.67□□□□□ -0.06
CPS1-206ENST00000470791 PLEKHG5O94827 1062 aa14.61□□□□□ -0.07
CPS1-206ENST00000470791 MIER1Q8N108 512 aa14.61□□□□□ -0.07
CPS1-206ENST00000470791 PHF12Q96QT6 1004 aa14.56□□□□□ -0.08
CPS1-206ENST00000470791 PLCD3Q8N3E9 789 aa14.55□□□□□ -0.08
CPS1-206ENST00000470791 POTEIP0CG38 1075 aa14.51□□□□□ -0.09
CPS1-206ENST00000470791 GALR2O43603 387 aaPredicted RBP14.5□□□□□ -0.09
CPS1-206ENST00000470791 TSPYL2Q9H2G4 693 aaPredicted RBP14.47□□□□□ -0.09
CPS1-206ENST00000470791 DCBLD2Q96PD2 775 aa14.46□□□□□ -0.09
CPS1-206ENST00000470791 FBXO3Q9UK99 471 aa14.46□□□□□ -0.09
CPS1-206ENST00000470791 ZBTB47Q9UFB7 747 aaPredicted RBP14.45□□□□□ -0.1
CPS1-206ENST00000470791 RASEFQ8IZ41 740 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms