RNA–Protein interactions for RNA: ENST00000470687.1

UBXN4-206, Transcript of UBX domain protein 4, humanhuman

TSL 2

Gene UBXN4, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-206ENST00000470687 AEBP2Q6ZN18 517 aaPredicted RBP19.16■□□□□ 0.66
UBXN4-206ENST00000470687 CHIC1Q5VXU3 224 aa17.96■□□□□ 0.47
UBXN4-206ENST00000470687 SENP3Q9H4L4 574 aaPredicted RBP16.36■□□□□ 0.21
UBXN4-206ENST00000470687 PHF23Q9BUL5 403 aaPredicted RBP16.11■□□□□ 0.17
UBXN4-206ENST00000470687 FOXD1Q16676 465 aa15.28■□□□□ 0.04
UBXN4-206ENST00000470687 POTEDQ86YR6 584 aa14.45□□□□□ -0.1
UBXN4-206ENST00000470687 MSH5O43196 834 aa14.39□□□□□ -0.11
UBXN4-206ENST00000470687 PLPPR3Q6T4P5 718 aa14.23□□□□□ -0.13
UBXN4-206ENST00000470687 PIAS4Q8N2W9 510 aaPredicted RBP14.22□□□□□ -0.13
UBXN4-206ENST00000470687 PPP6R1Q9UPN7 881 aa14.11□□□□□ -0.15
UBXN4-206ENST00000470687 ADRA2BP18089 450 aa14.04□□□□□ -0.16
UBXN4-206ENST00000470687 MAPK8IP2Q13387 824 aaPredicted RBP12.97□□□□□ -0.33
UBXN4-206ENST00000470687 DMRT2Q9Y5R5 561 aa12.95□□□□□ -0.34
UBXN4-206ENST00000470687 SCAF1Q9H7N4 1312 aaKnown RBP12.83□□□□□ -0.36
UBXN4-206ENST00000470687 CACNB1Q02641 598 aaPredicted RBP12.48□□□□□ -0.41
UBXN4-206ENST00000470687 PPP4R3CPQ6ZMV5 832 aa12.44□□□□□ -0.42
UBXN4-206ENST00000470687 DCAF8L1A6NGE4 600 aa12.4□□□□□ -0.42
UBXN4-206ENST00000470687 HOXD11P31277 338 aaPredicted RBP12.38□□□□□ -0.43
UBXN4-206ENST00000470687 CNKSR2Q8WXI2 1034 aa12.26□□□□□ -0.45
UBXN4-206ENST00000470687 RNF39Q9H2S5 420 aa12.26□□□□□ -0.45
UBXN4-206ENST00000470687 RNF216Q9NWF9 866 aaPredicted RBP12.22□□□□□ -0.45
UBXN4-206ENST00000470687 C1QBPQ07021 282 aaKnown RBP12.06□□□□□ -0.48
UBXN4-206ENST00000470687 DNAJC5BQ9UF47 199 aa12□□□□□ -0.49
UBXN4-206ENST00000470687 NCBP3Q53F19 620 aaKnown RBP11.88□□□□□ -0.51
UBXN4-206ENST00000470687 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.77□□□□□ -0.535e-10■■■□□ 16.3
UBXN4-206ENST00000470687 NPM3O75607 178 aaKnown RBP11.73□□□□□ -0.53
UBXN4-206ENST00000470687 U3KPZ7 1027 aaPredicted RBP11.52□□□□□ -0.57
UBXN4-206ENST00000470687 SPINK5Q9NQ38 1064 aaPredicted RBP11.42□□□□□ -0.58
UBXN4-206ENST00000470687 DSG3P32926 999 aa11.41□□□□□ -0.58
UBXN4-206ENST00000470687 CAPN15O75808 1086 aa11.4□□□□□ -0.58
UBXN4-206ENST00000470687 KCNA4P22459 653 aa11.3□□□□□ -0.6
UBXN4-206ENST00000470687 SLC4A2P04920 1241 aa11.27□□□□□ -0.61
UBXN4-206ENST00000470687 POTEHQ6S545 545 aa11.27□□□□□ -0.61
UBXN4-206ENST00000470687 TRHP20396 242 aaPredicted RBP11.15□□□□□ -0.62
UBXN4-206ENST00000470687 APLP2Q06481 763 aa11.15□□□□□ -0.62
UBXN4-206ENST00000470687 ZNF219Q9P2Y4 722 aaPredicted RBP11.14□□□□□ -0.63
UBXN4-206ENST00000470687 ABCB7O75027 752 aa11.12□□□□□ -0.63
UBXN4-206ENST00000470687 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.09□□□□□ -0.63
UBXN4-206ENST00000470687 HNRNPUL2Q1KMD3 747 aaKnown RBP11.09□□□□□ -0.63
UBXN4-206ENST00000470687 SAMD1Q6SPF0 538 aaPredicted RBP11.02□□□□□ -0.65
UBXN4-206ENST00000470687 RBM42Q9BTD8 480 aaKnown RBP10.88□□□□□ -0.67
UBXN4-206ENST00000470687 MYCNP04198 464 aaPredicted RBP10.85□□□□□ -0.67
UBXN4-206ENST00000470687 POLA2Q14181 598 aa10.8□□□□□ -0.68
UBXN4-206ENST00000470687 CHRDL2Q6WN34 429 aa10.74□□□□□ -0.69
UBXN4-206ENST00000470687 ATF5Q9Y2D1 282 aaPredicted RBP10.63□□□□□ -0.71
UBXN4-206ENST00000470687 FOXD4L1Q9NU39 408 aa10.62□□□□□ -0.71
UBXN4-206ENST00000470687 SLC4A1APQ9BWU0 796 aaKnown RBP10.61□□□□□ -0.71
UBXN4-206ENST00000470687 AKT1S1Q96B36 256 aa10.58□□□□□ -0.72
UBXN4-206ENST00000470687 ZBTB12Q9Y330 459 aaPredicted RBP10.57□□□□□ -0.72
UBXN4-206ENST00000470687 OSCARQ8IYS5 282 aa10.5□□□□□ -0.73
UBXN4-206ENST00000470687 REM2Q8IYK8 340 aaPredicted RBP10.48□□□□□ -0.73
UBXN4-206ENST00000470687 SP7Q8TDD2 431 aaPredicted RBP10.46□□□□□ -0.73
UBXN4-206ENST00000470687 PIP4P2Q8N4L2 257 aa10.44□□□□□ -0.74
UBXN4-206ENST00000470687 ZBTB22O15209 634 aa10.4□□□□□ -0.74
UBXN4-206ENST00000470687 PITPNM1O00562 1244 aa10.38□□□□□ -0.75
UBXN4-206ENST00000470687 FXR2P51116 673 aaKnown RBP eCLIP10.34□□□□□ -0.75
UBXN4-206ENST00000470687 ATXN8OSP0DMR3 200 aa10.31□□□□□ -0.76
UBXN4-206ENST00000470687 HAX1O00165 279 aa10.29□□□□□ -0.76
UBXN4-206ENST00000470687 SPDYE2BA6NHP3 402 aa10.23□□□□□ -0.77
UBXN4-206ENST00000470687 SPDYE6P0CI01 402 aa10.23□□□□□ -0.77
UBXN4-206ENST00000470687 SPDYE2Q495Y8 402 aa10.23□□□□□ -0.77
UBXN4-206ENST00000470687 FBLN2P98095 1184 aa10.21□□□□□ -0.77
UBXN4-206ENST00000470687 EVX2Q03828 476 aa10.17□□□□□ -0.78
UBXN4-206ENST00000470687 MKRN4PQ13434 485 aaPredicted RBP10.13□□□□□ -0.79
UBXN4-206ENST00000470687 SPDYE1Q8NFV5 336 aaPredicted RBP10.11□□□□□ -0.79
UBXN4-206ENST00000470687 PRKAR2AP13861 404 aaKnown RBP10.1□□□□□ -0.79
UBXN4-206ENST00000470687 CLEC11AQ9Y240 323 aa10.09□□□□□ -0.79
UBXN4-206ENST00000470687 SSUH2Q9Y2M2 353 aa10.08□□□□□ -0.8
UBXN4-206ENST00000470687 ZNF692Q9BU19 519 aaPredicted RBP10.06□□□□□ -0.8
UBXN4-206ENST00000470687 C19orf67A6NJJ6 358 aa10.02□□□□□ -0.81
UBXN4-206ENST00000470687 CHADLQ6NUI6 762 aa9.94□□□□□ -0.82
UBXN4-206ENST00000470687 GABBR2O75899 941 aa9.92□□□□□ -0.82
UBXN4-206ENST00000470687 PABPN1Q86U42 306 aaKnown RBP eCLIP9.92□□□□□ -0.82
UBXN4-206ENST00000470687 PRR29P0C7W0 189 aa9.89□□□□□ -0.83
UBXN4-206ENST00000470687 LHX8Q68G74 356 aa9.8□□□□□ -0.84
UBXN4-206ENST00000470687 CD44P16070 742 aaKnown RBP9.77□□□□□ -0.85
UBXN4-206ENST00000470687 FARP1Q9Y4F1 1045 aaPredicted RBP9.77□□□□□ -0.85
UBXN4-206ENST00000470687 POTEIP0CG38 1075 aa9.72□□□□□ -0.85
UBXN4-206ENST00000470687 CSRNP3Q8WYN3 585 aa9.69□□□□□ -0.86
UBXN4-206ENST00000470687 CLCN6P51797 869 aa9.67□□□□□ -0.86
UBXN4-206ENST00000470687 ZNF579Q8NAF0 562 aaKnown RBP9.62□□□□□ -0.87
UBXN4-206ENST00000470687 CREBZFQ9NS37 354 aa9.61□□□□□ -0.87
UBXN4-206ENST00000470687 DCBLD2Q96PD2 775 aa9.59□□□□□ -0.87
UBXN4-206ENST00000470687 ZRANB1Q9UGI0 708 aa9.59□□□□□ -0.87
UBXN4-206ENST00000470687 STAG3Q9UJ98 1225 aa9.58□□□□□ -0.88
UBXN4-206ENST00000470687 SPDYE4A6NLX3 237 aa9.52□□□□□ -0.89
UBXN4-206ENST00000470687 GALR2O43603 387 aaPredicted RBP9.51□□□□□ -0.89
UBXN4-206ENST00000470687 PAK3O75914 559 aaPredicted RBP9.45□□□□□ -0.9
UBXN4-206ENST00000470687 PHF12Q96QT6 1004 aa9.45□□□□□ -0.9
UBXN4-206ENST00000470687 EHMT2Q96KQ7 1210 aa9.43□□□□□ -0.9
UBXN4-206ENST00000470687 MNX1P50219 401 aaPredicted RBP9.42□□□□□ -0.9
UBXN4-206ENST00000470687 NPM1P06748 294 aaKnown RBP eCLIP9.41□□□□□ -0.9
UBXN4-206ENST00000470687 OTUD5Q96G74 571 aa9.4□□□□□ -0.9
UBXN4-206ENST00000470687 POTEB2H3BUK9 544 aa9.39□□□□□ -0.91
UBXN4-206ENST00000470687 PELP1Q8IZL8 1130 aaKnown RBP9.35□□□□□ -0.91
UBXN4-206ENST00000470687 PLSCR2Q9NRY7 297 aa9.34□□□□□ -0.91
UBXN4-206ENST00000470687 MS4A3Q96HJ5 214 aa9.32□□□□□ -0.92
UBXN4-206ENST00000470687 ASTLQ6HA08 431 aaPredicted RBP9.3□□□□□ -0.92
UBXN4-206ENST00000470687 ATMINO43313 823 aaPredicted RBP9.28□□□□□ -0.92
UBXN4-206ENST00000470687 PROM2Q8N271 834 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms