RNA–Protein interactions for RNA: ENST00000469713.1

VPS8-220, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 3

Gene VPS8, Length 668 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-220ENST00000469713 AEBP2Q6ZN18 517 aaPredicted RBP20.29■□□□□ 0.84
VPS8-220ENST00000469713 CHIC1Q5VXU3 224 aa19.13■□□□□ 0.65
VPS8-220ENST00000469713 SENP3Q9H4L4 574 aaPredicted RBP17.3■□□□□ 0.36
VPS8-220ENST00000469713 PHF23Q9BUL5 403 aaPredicted RBP17.06■□□□□ 0.32
VPS8-220ENST00000469713 FOXD1Q16676 465 aa16.16■□□□□ 0.18
VPS8-220ENST00000469713 PLPPR3Q6T4P5 718 aa15.61■□□□□ 0.09
VPS8-220ENST00000469713 MSH5O43196 834 aa15.17■□□□□ 0.02
VPS8-220ENST00000469713 POTEDQ86YR6 584 aa15.1■□□□□ 0.01
VPS8-220ENST00000469713 PPP6R1Q9UPN7 881 aa15.02■□□□□ -0
VPS8-220ENST00000469713 PIAS4Q8N2W9 510 aaPredicted RBP14.98□□□□□ -0.01
VPS8-220ENST00000469713 ADRA2BP18089 450 aa14.93□□□□□ -0.02
VPS8-220ENST00000469713 KCNA4P22459 653 aa13.86□□□□□ -0.19
VPS8-220ENST00000469713 PPP4R3CPQ6ZMV5 832 aa13.82□□□□□ -0.2
VPS8-220ENST00000469713 MAPK8IP2Q13387 824 aaPredicted RBP13.73□□□□□ -0.21
VPS8-220ENST00000469713 DMRT2Q9Y5R5 561 aa13.72□□□□□ -0.21
VPS8-220ENST00000469713 SCAF1Q9H7N4 1312 aaKnown RBP13.63□□□□□ -0.23
VPS8-220ENST00000469713 NCBP3Q53F19 620 aaKnown RBP13.5□□□□□ -0.25
VPS8-220ENST00000469713 NPM3O75607 178 aaKnown RBP13.35□□□□□ -0.27
VPS8-220ENST00000469713 CNKSR2Q8WXI2 1034 aa13.34□□□□□ -0.27
VPS8-220ENST00000469713 EHMT2Q96KQ7 1210 aa13.24□□□□□ -0.29
VPS8-220ENST00000469713 SLC4A1APQ9BWU0 796 aaKnown RBP13.23□□□□□ -0.29
VPS8-220ENST00000469713 HOXD11P31277 338 aaPredicted RBP13.19□□□□□ -0.3
VPS8-220ENST00000469713 CACNB1Q02641 598 aaPredicted RBP13.05□□□□□ -0.32
VPS8-220ENST00000469713 RNF216Q9NWF9 866 aaPredicted RBP13.01□□□□□ -0.33
VPS8-220ENST00000469713 RNF39Q9H2S5 420 aa12.97□□□□□ -0.33
VPS8-220ENST00000469713 DCAF8L1A6NGE4 600 aa12.96□□□□□ -0.33
VPS8-220ENST00000469713 CSRNP3Q8WYN3 585 aa12.93□□□□□ -0.34
VPS8-220ENST00000469713 DNAJC5BQ9UF47 199 aa12.86□□□□□ -0.35
VPS8-220ENST00000469713 ZBTB22O15209 634 aa12.78□□□□□ -0.36
VPS8-220ENST00000469713 C1QBPQ07021 282 aaKnown RBP12.77□□□□□ -0.37
VPS8-220ENST00000469713 FOXD4L1Q9NU39 408 aa12.64□□□□□ -0.39
VPS8-220ENST00000469713 SLC4A2P04920 1241 aa12.54□□□□□ -0.4
VPS8-220ENST00000469713 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS8-220ENST00000469713 MYCNP04198 464 aaPredicted RBP12.31□□□□□ -0.44
VPS8-220ENST00000469713 U3KPZ7 1027 aaPredicted RBP12.25□□□□□ -0.45
VPS8-220ENST00000469713 ATXN8OSP0DMR3 200 aa12.14□□□□□ -0.47
VPS8-220ENST00000469713 DSG3P32926 999 aa12.08□□□□□ -0.48
VPS8-220ENST00000469713 SPINK5Q9NQ38 1064 aaPredicted RBP12.07□□□□□ -0.48
VPS8-220ENST00000469713 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.02□□□□□ -0.49
VPS8-220ENST00000469713 HNRNPUL2Q1KMD3 747 aaKnown RBP12.02□□□□□ -0.49
VPS8-220ENST00000469713 SAMD1Q6SPF0 538 aaPredicted RBP12.01□□□□□ -0.49
VPS8-220ENST00000469713 ATF5Q9Y2D1 282 aaPredicted RBP12.01□□□□□ -0.49
VPS8-220ENST00000469713 CAPN15O75808 1086 aa11.98□□□□□ -0.49
VPS8-220ENST00000469713 APLP2Q06481 763 aa11.82□□□□□ -0.52
VPS8-220ENST00000469713 TRHP20396 242 aaPredicted RBP11.79□□□□□ -0.52
VPS8-220ENST00000469713 POTEHQ6S545 545 aa11.78□□□□□ -0.52
VPS8-220ENST00000469713 ZNF219Q9P2Y4 722 aaPredicted RBP11.78□□□□□ -0.52
VPS8-220ENST00000469713 ABCB7O75027 752 aa11.73□□□□□ -0.53
VPS8-220ENST00000469713 FKBP8Q14318 412 aa11.67□□□□□ -0.54
VPS8-220ENST00000469713 POLA2Q14181 598 aa11.53□□□□□ -0.56
VPS8-220ENST00000469713 MKRN4PQ13434 485 aaPredicted RBP11.49□□□□□ -0.57
VPS8-220ENST00000469713 RBM42Q9BTD8 480 aaKnown RBP11.48□□□□□ -0.57
VPS8-220ENST00000469713 FBLN2P98095 1184 aa11.43□□□□□ -0.58
VPS8-220ENST00000469713 SPDYE4A6NLX3 237 aa11.35□□□□□ -0.59
VPS8-220ENST00000469713 ZBTB12Q9Y330 459 aaPredicted RBP11.32□□□□□ -0.6
VPS8-220ENST00000469713 CHRDL2Q6WN34 429 aa11.3□□□□□ -0.6
VPS8-220ENST00000469713 AKT1S1Q96B36 256 aa11.21□□□□□ -0.61
VPS8-220ENST00000469713 PROM2Q8N271 834 aa11.2□□□□□ -0.62
VPS8-220ENST00000469713 OSCARQ8IYS5 282 aa11.16□□□□□ -0.62
VPS8-220ENST00000469713 RTN4Q9NQC3 1192 aaKnown RBP11.16□□□□□ -0.62
VPS8-220ENST00000469713 AMER1Q5JTC6 1135 aaPredicted RBP11.13□□□□□ -0.63
VPS8-220ENST00000469713 FBXO3Q9UK99 471 aa11.12□□□□□ -0.63
VPS8-220ENST00000469713 REM2Q8IYK8 340 aaPredicted RBP11.1□□□□□ -0.63
VPS8-220ENST00000469713 ZNF692Q9BU19 519 aaPredicted RBP11.07□□□□□ -0.64
VPS8-220ENST00000469713 SPDYE2BA6NHP3 402 aa11.06□□□□□ -0.64
VPS8-220ENST00000469713 SPDYE6P0CI01 402 aa11.06□□□□□ -0.64
VPS8-220ENST00000469713 SPDYE2Q495Y8 402 aa11.06□□□□□ -0.64
VPS8-220ENST00000469713 SSUH2Q9Y2M2 353 aa11.02□□□□□ -0.65
VPS8-220ENST00000469713 VASPP50552 380 aaPredicted RBP11□□□□□ -0.65
VPS8-220ENST00000469713 PIP4P2Q8N4L2 257 aa11□□□□□ -0.65
VPS8-220ENST00000469713 SP7Q8TDD2 431 aaPredicted RBP10.97□□□□□ -0.65
VPS8-220ENST00000469713 FXR2P51116 673 aaKnown RBP eCLIP10.96□□□□□ -0.65
VPS8-220ENST00000469713 PITPNM1O00562 1244 aa10.95□□□□□ -0.66
VPS8-220ENST00000469713 PABPN1Q86U42 306 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS8-220ENST00000469713 IFNLR1Q8IU57 520 aaPredicted RBP10.88□□□□□ -0.67
VPS8-220ENST00000469713 STAG3Q9UJ98 1225 aa10.83□□□□□ -0.68
VPS8-220ENST00000469713 HAX1O00165 279 aa10.78□□□□□ -0.68
VPS8-220ENST00000469713 PLCD3Q8N3E9 789 aa10.75□□□□□ -0.69
VPS8-220ENST00000469713 KLHL34Q8N239 644 aa10.74□□□□□ -0.69
VPS8-220ENST00000469713 EVX2Q03828 476 aa10.73□□□□□ -0.69
VPS8-220ENST00000469713 MIER1Q8N108 512 aa10.73□□□□□ -0.69
VPS8-220ENST00000469713 SPDYE1Q8NFV5 336 aaPredicted RBP10.7□□□□□ -0.7
VPS8-220ENST00000469713 SPOCK2Q92563 424 aa10.68□□□□□ -0.7
VPS8-220ENST00000469713 CLEC11AQ9Y240 323 aa10.67□□□□□ -0.7
VPS8-220ENST00000469713 PRKAR2AP13861 404 aaKnown RBP10.64□□□□□ -0.71
VPS8-220ENST00000469713 PKD2Q13563 968 aa10.64□□□□□ -0.71
VPS8-220ENST00000469713 PLEKHG5O94827 1062 aa10.61□□□□□ -0.71
VPS8-220ENST00000469713 C19orf67A6NJJ6 358 aa10.6□□□□□ -0.71
VPS8-220ENST00000469713 ZBTB47Q9UFB7 747 aaPredicted RBP10.57□□□□□ -0.72
VPS8-220ENST00000469713 SLC24A1O60721 1099 aa10.55□□□□□ -0.72
VPS8-220ENST00000469713 PRR29P0C7W0 189 aa10.55□□□□□ -0.72
VPS8-220ENST00000469713 CHADLQ6NUI6 762 aa10.52□□□□□ -0.73
VPS8-220ENST00000469713 ECM2O94769 699 aaPredicted RBP10.51□□□□□ -0.73
VPS8-220ENST00000469713 DCAF8L2P0C7V8 631 aa10.51□□□□□ -0.73
VPS8-220ENST00000469713 CREBZFQ9NS37 354 aa10.51□□□□□ -0.73
VPS8-220ENST00000469713 CIZ1Q9ULV3 898 aaPredicted RBP10.48□□□□□ -0.73
VPS8-220ENST00000469713 GABBR2O75899 941 aa10.46□□□□□ -0.73
VPS8-220ENST00000469713 MNX1P50219 401 aaPredicted RBP10.44□□□□□ -0.74
VPS8-220ENST00000469713 NUBP1P53384 320 aa10.43□□□□□ -0.74
VPS8-220ENST00000469713 RGL2O15211 777 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms