RNA–Protein interactions for RNA: ENST00000469077.1

PTPN22-204, Transcript of protein tyrosine phosphatase, non-receptor type 22, humanhuman

TSL 2

Gene PTPN22, Length 562 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22-204ENST00000469077 AEBP2Q6ZN18 517 aaPredicted RBP21.5■■□□□ 1.03
PTPN22-204ENST00000469077 CHIC1Q5VXU3 224 aa20.15■□□□□ 0.82
PTPN22-204ENST00000469077 SENP3Q9H4L4 574 aaPredicted RBP18.43■□□□□ 0.54
PTPN22-204ENST00000469077 PHF23Q9BUL5 403 aaPredicted RBP18.14■□□□□ 0.49
PTPN22-204ENST00000469077 POTEDQ86YR6 584 aa17.49■□□□□ 0.39
PTPN22-204ENST00000469077 FOXD1Q16676 465 aa17.29■□□□□ 0.36
PTPN22-204ENST00000469077 MSH5O43196 834 aa16.45■□□□□ 0.22
PTPN22-204ENST00000469077 PIAS4Q8N2W9 510 aaPredicted RBP15.98■□□□□ 0.15
PTPN22-204ENST00000469077 PLPPR3Q6T4P5 718 aa15.97■□□□□ 0.15
PTPN22-204ENST00000469077 PPP6R1Q9UPN7 881 aa15.83■□□□□ 0.12
PTPN22-204ENST00000469077 ADRA2BP18089 450 aa15.75■□□□□ 0.11
PTPN22-204ENST00000469077 CACNB1Q02641 598 aaPredicted RBP14.6□□□□□ -0.07
PTPN22-204ENST00000469077 MAPK8IP2Q13387 824 aaPredicted RBP14.56□□□□□ -0.08
PTPN22-204ENST00000469077 DMRT2Q9Y5R5 561 aa14.56□□□□□ -0.08
PTPN22-204ENST00000469077 SCAF1Q9H7N4 1312 aaKnown RBP14.47□□□□□ -0.09
PTPN22-204ENST00000469077 RNF39Q9H2S5 420 aa14□□□□□ -0.17
PTPN22-204ENST00000469077 PPP4R3CPQ6ZMV5 832 aa13.94□□□□□ -0.18
PTPN22-204ENST00000469077 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
PTPN22-204ENST00000469077 HOXD11P31277 338 aaPredicted RBP13.92□□□□□ -0.18
PTPN22-204ENST00000469077 CNKSR2Q8WXI2 1034 aa13.77□□□□□ -0.21
PTPN22-204ENST00000469077 C1QBPQ07021 282 aaKnown RBP13.73□□□□□ -0.21
PTPN22-204ENST00000469077 RNF216Q9NWF9 866 aaPredicted RBP13.73□□□□□ -0.21
PTPN22-204ENST00000469077 DNAJC5BQ9UF47 199 aa13.55□□□□□ -0.24
PTPN22-204ENST00000469077 POTEHQ6S545 545 aa13.52□□□□□ -0.25
PTPN22-204ENST00000469077 NCBP3Q53F19 620 aaKnown RBP13.33□□□□□ -0.28
PTPN22-204ENST00000469077 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.23□□□□□ -0.29
PTPN22-204ENST00000469077 NPM3O75607 178 aaKnown RBP13.11□□□□□ -0.31
PTPN22-204ENST00000469077 U3KPZ7 1027 aaPredicted RBP12.91□□□□□ -0.34
PTPN22-204ENST00000469077 DSG3P32926 999 aa12.83□□□□□ -0.36
PTPN22-204ENST00000469077 SPINK5Q9NQ38 1064 aaPredicted RBP12.81□□□□□ -0.36
PTPN22-204ENST00000469077 CAPN15O75808 1086 aa12.8□□□□□ -0.36
PTPN22-204ENST00000469077 KCNA4P22459 653 aa12.63□□□□□ -0.39
PTPN22-204ENST00000469077 SLC4A2P04920 1241 aa12.61□□□□□ -0.39
PTPN22-204ENST00000469077 APLP2Q06481 763 aa12.56□□□□□ -0.4
PTPN22-204ENST00000469077 TRHP20396 242 aaPredicted RBP12.52□□□□□ -0.41
PTPN22-204ENST00000469077 ZNF219Q9P2Y4 722 aaPredicted RBP12.52□□□□□ -0.41
PTPN22-204ENST00000469077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.48□□□□□ -0.41
PTPN22-204ENST00000469077 HNRNPUL2Q1KMD3 747 aaKnown RBP12.48□□□□□ -0.41
PTPN22-204ENST00000469077 ABCB7O75027 752 aa12.46□□□□□ -0.41
PTPN22-204ENST00000469077 SAMD1Q6SPF0 538 aaPredicted RBP12.39□□□□□ -0.43
PTPN22-204ENST00000469077 CHRDL2Q6WN34 429 aa12.3□□□□□ -0.44
PTPN22-204ENST00000469077 SP7Q8TDD2 431 aaPredicted RBP12.28□□□□□ -0.44
PTPN22-204ENST00000469077 RBM42Q9BTD8 480 aaKnown RBP12.26□□□□□ -0.45
PTPN22-204ENST00000469077 MYCNP04198 464 aaPredicted RBP12.15□□□□□ -0.46
PTPN22-204ENST00000469077 POLA2Q14181 598 aa12.14□□□□□ -0.47
PTPN22-204ENST00000469077 AKT1S1Q96B36 256 aa11.92□□□□□ -0.5
PTPN22-204ENST00000469077 ZBTB12Q9Y330 459 aaPredicted RBP11.89□□□□□ -0.51
PTPN22-204ENST00000469077 ATF5Q9Y2D1 282 aaPredicted RBP11.87□□□□□ -0.51
PTPN22-204ENST00000469077 PIP4P2Q8N4L2 257 aa11.84□□□□□ -0.51
PTPN22-204ENST00000469077 FOXD4L1Q9NU39 408 aa11.84□□□□□ -0.51
PTPN22-204ENST00000469077 SLC4A1APQ9BWU0 796 aaKnown RBP11.83□□□□□ -0.52
PTPN22-204ENST00000469077 HAX1O00165 279 aa11.81□□□□□ -0.52
PTPN22-204ENST00000469077 REM2Q8IYK8 340 aaPredicted RBP11.79□□□□□ -0.52
PTPN22-204ENST00000469077 OSCARQ8IYS5 282 aa11.73□□□□□ -0.53
PTPN22-204ENST00000469077 EVX2Q03828 476 aa11.69□□□□□ -0.54
PTPN22-204ENST00000469077 PITPNM1O00562 1244 aa11.65□□□□□ -0.54
PTPN22-204ENST00000469077 FXR2P51116 673 aaKnown RBP eCLIP11.65□□□□□ -0.54
PTPN22-204ENST00000469077 ZBTB22O15209 634 aa11.64□□□□□ -0.55
PTPN22-204ENST00000469077 ATXN8OSP0DMR3 200 aa11.56□□□□□ -0.56
PTPN22-204ENST00000469077 LHX8Q68G74 356 aa11.52□□□□□ -0.57
PTPN22-204ENST00000469077 SPDYE2BA6NHP3 402 aa11.49□□□□□ -0.57
PTPN22-204ENST00000469077 SPDYE6P0CI01 402 aa11.49□□□□□ -0.57
PTPN22-204ENST00000469077 SPDYE2Q495Y8 402 aa11.49□□□□□ -0.57
PTPN22-204ENST00000469077 FBLN2P98095 1184 aa11.45□□□□□ -0.58
PTPN22-204ENST00000469077 PLSCR2Q9NRY7 297 aa11.42□□□□□ -0.58
PTPN22-204ENST00000469077 SPDYE1Q8NFV5 336 aaPredicted RBP11.36□□□□□ -0.59
PTPN22-204ENST00000469077 PRKAR2AP13861 404 aaKnown RBP11.35□□□□□ -0.59
PTPN22-204ENST00000469077 GABBR2O75899 941 aa11.34□□□□□ -0.59
PTPN22-204ENST00000469077 CLEC11AQ9Y240 323 aa11.33□□□□□ -0.6
PTPN22-204ENST00000469077 C19orf67A6NJJ6 358 aa11.31□□□□□ -0.6
PTPN22-204ENST00000469077 MKRN4PQ13434 485 aaPredicted RBP11.31□□□□□ -0.6
PTPN22-204ENST00000469077 SSUH2Q9Y2M2 353 aa11.3□□□□□ -0.6
PTPN22-204ENST00000469077 ZNF692Q9BU19 519 aaPredicted RBP11.29□□□□□ -0.6
PTPN22-204ENST00000469077 PRR29P0C7W0 189 aa11.13□□□□□ -0.63
PTPN22-204ENST00000469077 POTEIP0CG38 1075 aa11.13□□□□□ -0.63
PTPN22-204ENST00000469077 CHADLQ6NUI6 762 aa11.13□□□□□ -0.63
PTPN22-204ENST00000469077 PABPN1Q86U42 306 aaKnown RBP eCLIP11.1□□□□□ -0.63
PTPN22-204ENST00000469077 CD44P16070 742 aaKnown RBP10.97□□□□□ -0.65
PTPN22-204ENST00000469077 CLCN6P51797 869 aa10.97□□□□□ -0.65
PTPN22-204ENST00000469077 FARP1Q9Y4F1 1045 aaPredicted RBP10.97□□□□□ -0.65
PTPN22-204ENST00000469077 CSRNP3Q8WYN3 585 aa10.89□□□□□ -0.67
PTPN22-204ENST00000469077 POTEMA6NI47 508 aa10.88□□□□□ -0.67
PTPN22-204ENST00000469077 OTUD5Q96G74 571 aa10.86□□□□□ -0.67
PTPN22-204ENST00000469077 POTEGQ6S5H5 508 aa10.81□□□□□ -0.68
PTPN22-204ENST00000469077 ZNF579Q8NAF0 562 aaKnown RBP10.81□□□□□ -0.68
PTPN22-204ENST00000469077 DCBLD2Q96PD2 775 aa10.81□□□□□ -0.68
PTPN22-204ENST00000469077 STAG3Q9UJ98 1225 aa10.78□□□□□ -0.68
PTPN22-204ENST00000469077 CREBZFQ9NS37 354 aa10.77□□□□□ -0.69
PTPN22-204ENST00000469077 ZRANB1Q9UGI0 708 aa10.77□□□□□ -0.69
PTPN22-204ENST00000469077 PCDH10Q9P2E7 1040 aa10.75□□□□□ -0.69
PTPN22-204ENST00000469077 POTEB2H3BUK9 544 aa10.74□□□□□ -0.69
PTPN22-204ENST00000469077 GALR2O43603 387 aaPredicted RBP10.67□□□□□ -0.7
PTPN22-204ENST00000469077 SPDYE4A6NLX3 237 aa10.63□□□□□ -0.71
PTPN22-204ENST00000469077 PAK3O75914 559 aaPredicted RBP10.63□□□□□ -0.71
PTPN22-204ENST00000469077 NPM1P06748 294 aaKnown RBP eCLIP10.58□□□□□ -0.72
PTPN22-204ENST00000469077 PHF12Q96QT6 1004 aa10.57□□□□□ -0.72
PTPN22-204ENST00000469077 MNX1P50219 401 aaPredicted RBP10.55□□□□□ -0.72
PTPN22-204ENST00000469077 EHMT2Q96KQ7 1210 aa10.55□□□□□ -0.72
PTPN22-204ENST00000469077 LCE2DQ5TA82 110 aaPredicted RBP10.53□□□□□ -0.72
PTPN22-204ENST00000469077 PELP1Q8IZL8 1130 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms