RNA–Protein interactions for RNA: ENST00000469043.1

SCFD1-205, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-205ENST00000469043 AEBP2Q6ZN18 517 aaPredicted RBP27.26■■□□□ 1.95
SCFD1-205ENST00000469043 CHIC1Q5VXU3 224 aa26.02■■□□□ 1.76
SCFD1-205ENST00000469043 SENP3Q9H4L4 574 aaPredicted RBP23.33■■□□□ 1.33
SCFD1-205ENST00000469043 PHF23Q9BUL5 403 aaPredicted RBP23.03■■□□□ 1.28
SCFD1-205ENST00000469043 FOXD1Q16676 465 aa21.68■■□□□ 1.06
SCFD1-205ENST00000469043 PLPPR3Q6T4P5 718 aa20.88■□□□□ 0.93
SCFD1-205ENST00000469043 MSH5O43196 834 aa20.34■□□□□ 0.85
SCFD1-205ENST00000469043 PIAS4Q8N2W9 510 aaPredicted RBP20.32■□□□□ 0.84
SCFD1-205ENST00000469043 PPP6R1Q9UPN7 881 aa20.32■□□□□ 0.84
SCFD1-205ENST00000469043 ADRA2BP18089 450 aa20.28■□□□□ 0.84
SCFD1-205ENST00000469043 POTEDQ86YR6 584 aa19.64■□□□□ 0.73
SCFD1-205ENST00000469043 SCAF1Q9H7N4 1312 aaKnown RBP18.69■□□□□ 0.58
SCFD1-205ENST00000469043 MAPK8IP2Q13387 824 aaPredicted RBP18.6■□□□□ 0.57
SCFD1-205ENST00000469043 DMRT2Q9Y5R5 561 aa18.48■□□□□ 0.55
SCFD1-205ENST00000469043 PPP4R3CPQ6ZMV5 832 aa18.29■□□□□ 0.52
SCFD1-205ENST00000469043 CNKSR2Q8WXI2 1034 aa17.95■□□□□ 0.46
SCFD1-205ENST00000469043 HOXD11P31277 338 aaPredicted RBP17.84■□□□□ 0.45
SCFD1-205ENST00000469043 DCAF8L1A6NGE4 600 aa17.79■□□□□ 0.44
SCFD1-205ENST00000469043 RNF216Q9NWF9 866 aaPredicted RBP17.77■□□□□ 0.44
SCFD1-205ENST00000469043 NCBP3Q53F19 620 aaKnown RBP17.69■□□□□ 0.42
SCFD1-205ENST00000469043 CACNB1Q02641 598 aaPredicted RBP17.41■□□□□ 0.38
SCFD1-205ENST00000469043 NPM3O75607 178 aaKnown RBP17.32■□□□□ 0.36
SCFD1-205ENST00000469043 RNF39Q9H2S5 420 aa17.31■□□□□ 0.36
SCFD1-205ENST00000469043 DNAJC5BQ9UF47 199 aa17.25■□□□□ 0.35
SCFD1-205ENST00000469043 C1QBPQ07021 282 aaKnown RBP17.11■□□□□ 0.33
SCFD1-205ENST00000469043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.07■□□□□ 0.326e-8■□□□□ 8.2
SCFD1-205ENST00000469043 KCNA4P22459 653 aa17.05■□□□□ 0.32
SCFD1-205ENST00000469043 U3KPZ7 1027 aaPredicted RBP16.63■□□□□ 0.25
SCFD1-205ENST00000469043 SLC4A2P04920 1241 aa16.5■□□□□ 0.23
SCFD1-205ENST00000469043 CAPN15O75808 1086 aa16.41■□□□□ 0.22
SCFD1-205ENST00000469043 SPINK5Q9NQ38 1064 aaPredicted RBP16.36■□□□□ 0.21
SCFD1-205ENST00000469043 APLP2Q06481 763 aa16.33■□□□□ 0.2
SCFD1-205ENST00000469043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.31■□□□□ 0.2
SCFD1-205ENST00000469043 HNRNPUL2Q1KMD3 747 aaKnown RBP16.31■□□□□ 0.2
SCFD1-205ENST00000469043 DSG3P32926 999 aa16.24■□□□□ 0.19
SCFD1-205ENST00000469043 SAMD1Q6SPF0 538 aaPredicted RBP16.19■□□□□ 0.18
SCFD1-205ENST00000469043 SLC4A1APQ9BWU0 796 aaKnown RBP16.17■□□□□ 0.18
SCFD1-205ENST00000469043 TRHP20396 242 aaPredicted RBP16.16■□□□□ 0.18
SCFD1-205ENST00000469043 ZNF219Q9P2Y4 722 aaPredicted RBP16.15■□□□□ 0.18
SCFD1-205ENST00000469043 MYCNP04198 464 aaPredicted RBP16.07■□□□□ 0.16
SCFD1-205ENST00000469043 ABCB7O75027 752 aa15.99■□□□□ 0.15
SCFD1-205ENST00000469043 FOXD4L1Q9NU39 408 aa15.94■□□□□ 0.14
SCFD1-205ENST00000469043 POLA2Q14181 598 aa15.73■□□□□ 0.11
SCFD1-205ENST00000469043 ZBTB22O15209 634 aa15.63■□□□□ 0.09
SCFD1-205ENST00000469043 ATF5Q9Y2D1 282 aaPredicted RBP15.61■□□□□ 0.09
SCFD1-205ENST00000469043 RBM42Q9BTD8 480 aaKnown RBP15.57■□□□□ 0.08
SCFD1-205ENST00000469043 ATXN8OSP0DMR3 200 aa15.47■□□□□ 0.07
SCFD1-205ENST00000469043 ZBTB12Q9Y330 459 aaPredicted RBP15.47■□□□□ 0.07
SCFD1-205ENST00000469043 POTEHQ6S545 545 aa15.44■□□□□ 0.06
SCFD1-205ENST00000469043 AKT1S1Q96B36 256 aa15.2■□□□□ 0.02
SCFD1-205ENST00000469043 OSCARQ8IYS5 282 aa15.18■□□□□ 0.02
SCFD1-205ENST00000469043 CHRDL2Q6WN34 429 aa15.14■□□□□ 0.01
SCFD1-205ENST00000469043 FBLN2P98095 1184 aa15.13■□□□□ 0.01
SCFD1-205ENST00000469043 REM2Q8IYK8 340 aaPredicted RBP15.03■□□□□ -0
SCFD1-205ENST00000469043 CSRNP3Q8WYN3 585 aa15.03■□□□□ -0
SCFD1-205ENST00000469043 SPDYE2BA6NHP3 402 aa14.97□□□□□ -0.01
SCFD1-205ENST00000469043 SPDYE6P0CI01 402 aa14.97□□□□□ -0.01
SCFD1-205ENST00000469043 SPDYE2Q495Y8 402 aa14.97□□□□□ -0.01
SCFD1-205ENST00000469043 EHMT2Q96KQ7 1210 aa14.91□□□□□ -0.02
SCFD1-205ENST00000469043 MKRN4PQ13434 485 aaPredicted RBP14.9□□□□□ -0.02
SCFD1-205ENST00000469043 PITPNM1O00562 1244 aa14.84□□□□□ -0.03
SCFD1-205ENST00000469043 ZNF692Q9BU19 519 aaPredicted RBP14.82□□□□□ -0.04
SCFD1-205ENST00000469043 PIP4P2Q8N4L2 257 aa14.78□□□□□ -0.04
SCFD1-205ENST00000469043 FXR2P51116 673 aaKnown RBP eCLIP14.72□□□□□ -0.05
SCFD1-205ENST00000469043 SSUH2Q9Y2M2 353 aa14.72□□□□□ -0.05
SCFD1-205ENST00000469043 SPDYE1Q8NFV5 336 aaPredicted RBP14.7□□□□□ -0.06
SCFD1-205ENST00000469043 CLEC11AQ9Y240 323 aa14.67□□□□□ -0.06
SCFD1-205ENST00000469043 PABPN1Q86U42 306 aaKnown RBP eCLIP14.57□□□□□ -0.08
SCFD1-205ENST00000469043 HAX1O00165 279 aa14.56□□□□□ -0.08
SCFD1-205ENST00000469043 SP7Q8TDD2 431 aaPredicted RBP14.52□□□□□ -0.09
SCFD1-205ENST00000469043 PRKAR2AP13861 404 aaKnown RBP14.5□□□□□ -0.09
SCFD1-205ENST00000469043 PRR29P0C7W0 189 aa14.46□□□□□ -0.09
SCFD1-205ENST00000469043 CHADLQ6NUI6 762 aa14.33□□□□□ -0.12
SCFD1-205ENST00000469043 SPDYE4A6NLX3 237 aa14.32□□□□□ -0.12
SCFD1-205ENST00000469043 EVX2Q03828 476 aa14.27□□□□□ -0.13
SCFD1-205ENST00000469043 STAG3Q9UJ98 1225 aa14.26□□□□□ -0.13
SCFD1-205ENST00000469043 C19orf67A6NJJ6 358 aa14.24□□□□□ -0.13
SCFD1-205ENST00000469043 FARP1Q9Y4F1 1045 aaPredicted RBP14.15□□□□□ -0.14
SCFD1-205ENST00000469043 CD44P16070 742 aaKnown RBP14.04□□□□□ -0.16
SCFD1-205ENST00000469043 CREBZFQ9NS37 354 aa14.04□□□□□ -0.16
SCFD1-205ENST00000469043 GABBR2O75899 941 aa14.03□□□□□ -0.16
SCFD1-205ENST00000469043 CLCN6P51797 869 aa13.93□□□□□ -0.18
SCFD1-205ENST00000469043 PROM2Q8N271 834 aa13.91□□□□□ -0.18
SCFD1-205ENST00000469043 NPM1P06748 294 aaKnown RBP eCLIP13.89□□□□□ -0.19
SCFD1-205ENST00000469043 ZRANB1Q9UGI0 708 aa13.88□□□□□ -0.19
SCFD1-205ENST00000469043 PAK3O75914 559 aaPredicted RBP13.84□□□□□ -0.19
SCFD1-205ENST00000469043 ZNF579Q8NAF0 562 aaKnown RBP13.81□□□□□ -0.2
SCFD1-205ENST00000469043 MNX1P50219 401 aaPredicted RBP13.78□□□□□ -0.2
SCFD1-205ENST00000469043 PLEKHG5O94827 1062 aa13.74□□□□□ -0.21
SCFD1-205ENST00000469043 DCBLD2Q96PD2 775 aa13.72□□□□□ -0.21
SCFD1-205ENST00000469043 MIER1Q8N108 512 aa13.7□□□□□ -0.22
SCFD1-205ENST00000469043 POTEIP0CG38 1075 aa13.67□□□□□ -0.22
SCFD1-205ENST00000469043 FKBP8Q14318 412 aa13.67□□□□□ -0.22
SCFD1-205ENST00000469043 LHX8Q68G74 356 aa13.64□□□□□ -0.23
SCFD1-205ENST00000469043 PHF12Q96QT6 1004 aa13.63□□□□□ -0.23
SCFD1-205ENST00000469043 GALR2O43603 387 aaPredicted RBP13.62□□□□□ -0.23
SCFD1-205ENST00000469043 PLCD3Q8N3E9 789 aa13.6□□□□□ -0.23
SCFD1-205ENST00000469043 TSPYL2Q9H2G4 693 aaPredicted RBP13.58□□□□□ -0.24
SCFD1-205ENST00000469043 ZBTB47Q9UFB7 747 aaPredicted RBP13.53□□□□□ -0.24
SCFD1-205ENST00000469043 CCDC61Q9Y6R9 512 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms