RNA–Protein interactions for RNA: ENST00000468894.1

XRN1-207, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 318 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-207ENST00000468894 AEBP2Q6ZN18 517 aaPredicted RBP29.71■■■□□ 2.35
XRN1-207ENST00000468894 CHIC1Q5VXU3 224 aa29.01■■■□□ 2.23
XRN1-207ENST00000468894 PHF23Q9BUL5 403 aaPredicted RBP25.55■■□□□ 1.68
XRN1-207ENST00000468894 SENP3Q9H4L4 574 aaPredicted RBP25.14■■□□□ 1.62
XRN1-207ENST00000468894 PLPPR3Q6T4P5 718 aa23.54■■□□□ 1.36
XRN1-207ENST00000468894 FOXD1Q16676 465 aa23.35■■□□□ 1.33
XRN1-207ENST00000468894 PPP6R1Q9UPN7 881 aa22.53■■□□□ 1.2
XRN1-207ENST00000468894 ADRA2BP18089 450 aa22.49■■□□□ 1.19
XRN1-207ENST00000468894 PIAS4Q8N2W9 510 aaPredicted RBP22.02■■□□□ 1.12
XRN1-207ENST00000468894 MSH5O43196 834 aa21.48■■□□□ 1.03
XRN1-207ENST00000468894 PPP4R3CPQ6ZMV5 832 aa20.77■□□□□ 0.92
XRN1-207ENST00000468894 SCAF1Q9H7N4 1312 aaKnown RBP20.49■□□□□ 0.87
XRN1-207ENST00000468894 MAPK8IP2Q13387 824 aaPredicted RBP20.39■□□□□ 0.85
XRN1-207ENST00000468894 KCNA4P22459 653 aa20.37■□□□□ 0.85
XRN1-207ENST00000468894 NCBP3Q53F19 620 aaKnown RBP20.18■□□□□ 0.82
XRN1-207ENST00000468894 CNKSR2Q8WXI2 1034 aa20.16■□□□□ 0.82
XRN1-207ENST00000468894 DMRT2Q9Y5R5 561 aa20.09■□□□□ 0.81
XRN1-207ENST00000468894 NPM3O75607 178 aaKnown RBP19.97■□□□□ 0.79
XRN1-207ENST00000468894 RNF216Q9NWF9 866 aaPredicted RBP19.76■□□□□ 0.75
XRN1-207ENST00000468894 HOXD11P31277 338 aaPredicted RBP19.69■□□□□ 0.74
XRN1-207ENST00000468894 POTEDQ86YR6 584 aa19.52■□□□□ 0.72
XRN1-207ENST00000468894 DNAJC5BQ9UF47 199 aa19.38■□□□□ 0.69
XRN1-207ENST00000468894 SLC4A1APQ9BWU0 796 aaKnown RBP19.37■□□□□ 0.69
XRN1-207ENST00000468894 DCAF8L1A6NGE4 600 aa19.17■□□□□ 0.66
XRN1-207ENST00000468894 EHMT2Q96KQ7 1210 aa18.89■□□□□ 0.61
XRN1-207ENST00000468894 SLC4A2P04920 1241 aa18.86■□□□□ 0.61
XRN1-207ENST00000468894 ZBTB22O15209 634 aa18.78■□□□□ 0.6
XRN1-207ENST00000468894 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.72■□□□□ 0.59
XRN1-207ENST00000468894 FOXD4L1Q9NU39 408 aa18.71■□□□□ 0.59
XRN1-207ENST00000468894 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
XRN1-207ENST00000468894 U3KPZ7 1027 aaPredicted RBP18.49■□□□□ 0.55
XRN1-207ENST00000468894 RNF39Q9H2S5 420 aa18.44■□□□□ 0.54
XRN1-207ENST00000468894 MYCNP04198 464 aaPredicted RBP18.43■□□□□ 0.54
XRN1-207ENST00000468894 C1QBPQ07021 282 aaKnown RBP18.19■□□□□ 0.5
XRN1-207ENST00000468894 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.18■□□□□ 0.5
XRN1-207ENST00000468894 HNRNPUL2Q1KMD3 747 aaKnown RBP18.18■□□□□ 0.5
XRN1-207ENST00000468894 SAMD1Q6SPF0 538 aaPredicted RBP18.14■□□□□ 0.49
XRN1-207ENST00000468894 ATXN8OSP0DMR3 200 aa18.02■□□□□ 0.48
XRN1-207ENST00000468894 APLP2Q06481 763 aa17.97■□□□□ 0.47
XRN1-207ENST00000468894 ATF5Q9Y2D1 282 aaPredicted RBP17.97■□□□□ 0.47
XRN1-207ENST00000468894 SPINK5Q9NQ38 1064 aaPredicted RBP17.96■□□□□ 0.47
XRN1-207ENST00000468894 CACNB1Q02641 598 aaPredicted RBP17.89■□□□□ 0.45
XRN1-207ENST00000468894 CAPN15O75808 1086 aa17.83■□□□□ 0.44
XRN1-207ENST00000468894 TRHP20396 242 aaPredicted RBP17.76■□□□□ 0.43
XRN1-207ENST00000468894 ZNF219Q9P2Y4 722 aaPredicted RBP17.76■□□□□ 0.43
XRN1-207ENST00000468894 DSG3P32926 999 aa17.56■□□□□ 0.4
XRN1-207ENST00000468894 ABCB7O75027 752 aa17.54■□□□□ 0.4
XRN1-207ENST00000468894 POLA2Q14181 598 aa17.48■□□□□ 0.39
XRN1-207ENST00000468894 MKRN4PQ13434 485 aaPredicted RBP17.2■□□□□ 0.34
XRN1-207ENST00000468894 ZBTB12Q9Y330 459 aaPredicted RBP17.19■□□□□ 0.34
XRN1-207ENST00000468894 FBLN2P98095 1184 aa17.13■□□□□ 0.33
XRN1-207ENST00000468894 OSCARQ8IYS5 282 aa16.94■□□□□ 0.3
XRN1-207ENST00000468894 FKBP8Q14318 412 aa16.84■□□□□ 0.29
XRN1-207ENST00000468894 SPDYE4A6NLX3 237 aa16.78■□□□□ 0.28
XRN1-207ENST00000468894 SPDYE2BA6NHP3 402 aa16.75■□□□□ 0.27
XRN1-207ENST00000468894 SPDYE6P0CI01 402 aa16.75■□□□□ 0.27
XRN1-207ENST00000468894 SPDYE2Q495Y8 402 aa16.75■□□□□ 0.27
XRN1-207ENST00000468894 RBM42Q9BTD8 480 aaKnown RBP16.69■□□□□ 0.26
XRN1-207ENST00000468894 ZNF692Q9BU19 519 aaPredicted RBP16.66■□□□□ 0.26
XRN1-207ENST00000468894 SSUH2Q9Y2M2 353 aa16.66■□□□□ 0.26
XRN1-207ENST00000468894 PROM2Q8N271 834 aa16.56■□□□□ 0.24
XRN1-207ENST00000468894 AKT1S1Q96B36 256 aa16.51■□□□□ 0.23
XRN1-207ENST00000468894 PABPN1Q86U42 306 aaKnown RBP eCLIP16.48■□□□□ 0.23
XRN1-207ENST00000468894 REM2Q8IYK8 340 aaPredicted RBP16.36■□□□□ 0.21
XRN1-207ENST00000468894 SPDYE1Q8NFV5 336 aaPredicted RBP16.23■□□□□ 0.19
XRN1-207ENST00000468894 PITPNM1O00562 1244 aa16.21■□□□□ 0.19
XRN1-207ENST00000468894 FBXO3Q9UK99 471 aa16.18■□□□□ 0.18
XRN1-207ENST00000468894 STAG3Q9UJ98 1225 aa16.16■□□□□ 0.18
XRN1-207ENST00000468894 CLEC11AQ9Y240 323 aa16.15■□□□□ 0.18
XRN1-207ENST00000468894 VASPP50552 380 aaPredicted RBP16.03■□□□□ 0.16
XRN1-207ENST00000468894 CHRDL2Q6WN34 429 aa16.01■□□□□ 0.15
XRN1-207ENST00000468894 PRR29P0C7W0 189 aa15.99■□□□□ 0.15
XRN1-207ENST00000468894 FXR2P51116 673 aaKnown RBP eCLIP15.87■□□□□ 0.13
XRN1-207ENST00000468894 CREBZFQ9NS37 354 aa15.87■□□□□ 0.13
XRN1-207ENST00000468894 MIER1Q8N108 512 aa15.86■□□□□ 0.13
XRN1-207ENST00000468894 PLCD3Q8N3E9 789 aa15.86■□□□□ 0.13
XRN1-207ENST00000468894 PIP4P2Q8N4L2 257 aa15.84■□□□□ 0.13
XRN1-207ENST00000468894 IFNLR1Q8IU57 520 aaPredicted RBP15.81■□□□□ 0.12
XRN1-207ENST00000468894 CHADLQ6NUI6 762 aa15.79■□□□□ 0.12
XRN1-207ENST00000468894 PRKAR2AP13861 404 aaKnown RBP15.77■□□□□ 0.12
XRN1-207ENST00000468894 PLEKHG5O94827 1062 aa15.74■□□□□ 0.11
XRN1-207ENST00000468894 MNX1P50219 401 aaPredicted RBP15.73■□□□□ 0.11
XRN1-207ENST00000468894 KLHL34Q8N239 644 aa15.67■□□□□ 0.1
XRN1-207ENST00000468894 ZBTB47Q9UFB7 747 aaPredicted RBP15.66■□□□□ 0.1
XRN1-207ENST00000468894 FARP1Q9Y4F1 1045 aaPredicted RBP15.63■□□□□ 0.09
XRN1-207ENST00000468894 SPOCK2Q92563 424 aa15.58■□□□□ 0.08
XRN1-207ENST00000468894 NPM1P06748 294 aaKnown RBP eCLIP15.53■□□□□ 0.08
XRN1-207ENST00000468894 NUBP1P53384 320 aa15.52■□□□□ 0.08
XRN1-207ENST00000468894 POTEHQ6S545 545 aa15.46■□□□□ 0.07
XRN1-207ENST00000468894 RASEFQ8IZ41 740 aa15.46■□□□□ 0.07
XRN1-207ENST00000468894 RTN4Q9NQC3 1192 aaKnown RBP15.41■□□□□ 0.06
XRN1-207ENST00000468894 AMER1Q5JTC6 1135 aaPredicted RBP15.4■□□□□ 0.06
XRN1-207ENST00000468894 FAM212AQ96EL1 285 aa15.36■□□□□ 0.05
XRN1-207ENST00000468894 C19orf67A6NJJ6 358 aa15.34■□□□□ 0.05
XRN1-207ENST00000468894 CD44P16070 742 aaKnown RBP15.32■□□□□ 0.04
XRN1-207ENST00000468894 TSPYL2Q9H2G4 693 aaPredicted RBP15.32■□□□□ 0.04
XRN1-207ENST00000468894 CIZ1Q9ULV3 898 aaPredicted RBP15.32■□□□□ 0.04
XRN1-207ENST00000468894 PKD2Q13563 968 aa15.31■□□□□ 0.04
XRN1-207ENST00000468894 GSE1Q14687 1217 aa15.3■□□□□ 0.04
XRN1-207ENST00000468894 DCAF8Q5TAQ9 597 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms