RNA–Protein interactions for RNA: ENST00000468108.1

CCDC66-211, Transcript of coiled-coil domain containing 66, humanhuman

TSL 4

Gene CCDC66, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66-211ENST00000468108 AEBP2Q6ZN18 517 aaPredicted RBP30.42■■■□□ 2.46
CCDC66-211ENST00000468108 CHIC1Q5VXU3 224 aa28.44■■■□□ 2.14
CCDC66-211ENST00000468108 SENP3Q9H4L4 574 aaPredicted RBP26.03■■□□□ 1.76
CCDC66-211ENST00000468108 PHF23Q9BUL5 403 aaPredicted RBP25.62■■□□□ 1.69
CCDC66-211ENST00000468108 FOXD1Q16676 465 aa24.33■■□□□ 1.49
CCDC66-211ENST00000468108 POTEDQ86YR6 584 aa23.21■■□□□ 1.31
CCDC66-211ENST00000468108 MSH5O43196 834 aa22.95■■□□□ 1.26
CCDC66-211ENST00000468108 PIAS4Q8N2W9 510 aaPredicted RBP22.62■■□□□ 1.21
CCDC66-211ENST00000468108 PLPPR3Q6T4P5 718 aa22.5■■□□□ 1.19
CCDC66-211ENST00000468108 PPP6R1Q9UPN7 881 aa22.36■■□□□ 1.17
CCDC66-211ENST00000468108 ADRA2BP18089 450 aa22.27■■□□□ 1.16
CCDC66-211ENST00000468108 MAPK8IP2Q13387 824 aaPredicted RBP20.6■□□□□ 0.89
CCDC66-211ENST00000468108 DMRT2Q9Y5R5 561 aa20.57■□□□□ 0.88
CCDC66-211ENST00000468108 SCAF1Q9H7N4 1312 aaKnown RBP20.38■□□□□ 0.85
CCDC66-211ENST00000468108 CACNB1Q02641 598 aaPredicted RBP19.99■□□□□ 0.79
CCDC66-211ENST00000468108 DCAF8L1A6NGE4 600 aa19.77■□□□□ 0.76
CCDC66-211ENST00000468108 PPP4R3CPQ6ZMV5 832 aa19.66■□□□□ 0.74
CCDC66-211ENST00000468108 HOXD11P31277 338 aaPredicted RBP19.62■□□□□ 0.73
CCDC66-211ENST00000468108 RNF39Q9H2S5 420 aa19.53■□□□□ 0.72
CCDC66-211ENST00000468108 CNKSR2Q8WXI2 1034 aa19.4■□□□□ 0.7
CCDC66-211ENST00000468108 RNF216Q9NWF9 866 aaPredicted RBP19.35■□□□□ 0.69
CCDC66-211ENST00000468108 C1QBPQ07021 282 aaKnown RBP19.21■□□□□ 0.67
CCDC66-211ENST00000468108 DNAJC5BQ9UF47 199 aa19.02■□□□□ 0.64
CCDC66-211ENST00000468108 NCBP3Q53F19 620 aaKnown RBP18.76■□□□□ 0.59
CCDC66-211ENST00000468108 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.7■□□□□ 0.588e-6■□□□□ 10.7
CCDC66-211ENST00000468108 NPM3O75607 178 aaKnown RBP18.49■□□□□ 0.55
CCDC66-211ENST00000468108 U3KPZ7 1027 aaPredicted RBP18.27■□□□□ 0.52
CCDC66-211ENST00000468108 CAPN15O75808 1086 aa18.14■□□□□ 0.49
CCDC66-211ENST00000468108 SPINK5Q9NQ38 1064 aaPredicted RBP18.14■□□□□ 0.49
CCDC66-211ENST00000468108 DSG3P32926 999 aa18.13■□□□□ 0.49
CCDC66-211ENST00000468108 POTEHQ6S545 545 aa18.09■□□□□ 0.49
CCDC66-211ENST00000468108 SLC4A2P04920 1241 aa17.78■□□□□ 0.44
CCDC66-211ENST00000468108 TRHP20396 242 aaPredicted RBP17.73■□□□□ 0.43
CCDC66-211ENST00000468108 KCNA4P22459 653 aa17.71■□□□□ 0.43
CCDC66-211ENST00000468108 APLP2Q06481 763 aa17.7■□□□□ 0.42
CCDC66-211ENST00000468108 ABCB7O75027 752 aa17.68■□□□□ 0.42
CCDC66-211ENST00000468108 ZNF219Q9P2Y4 722 aaPredicted RBP17.68■□□□□ 0.42
CCDC66-211ENST00000468108 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.56■□□□□ 0.4
CCDC66-211ENST00000468108 HNRNPUL2Q1KMD3 747 aaKnown RBP17.56■□□□□ 0.4
CCDC66-211ENST00000468108 SAMD1Q6SPF0 538 aaPredicted RBP17.44■□□□□ 0.38
CCDC66-211ENST00000468108 RBM42Q9BTD8 480 aaKnown RBP17.32■□□□□ 0.36
CCDC66-211ENST00000468108 POLA2Q14181 598 aa17.13■□□□□ 0.33
CCDC66-211ENST00000468108 CHRDL2Q6WN34 429 aa17.13■□□□□ 0.33
CCDC66-211ENST00000468108 MYCNP04198 464 aaPredicted RBP17.12■□□□□ 0.33
CCDC66-211ENST00000468108 AKT1S1Q96B36 256 aa16.81■□□□□ 0.28
CCDC66-211ENST00000468108 ATF5Q9Y2D1 282 aaPredicted RBP16.76■□□□□ 0.27
CCDC66-211ENST00000468108 ZBTB12Q9Y330 459 aaPredicted RBP16.75■□□□□ 0.27
CCDC66-211ENST00000468108 SP7Q8TDD2 431 aaPredicted RBP16.74■□□□□ 0.27
CCDC66-211ENST00000468108 FOXD4L1Q9NU39 408 aa16.68■□□□□ 0.26
CCDC66-211ENST00000468108 REM2Q8IYK8 340 aaPredicted RBP16.66■□□□□ 0.26
CCDC66-211ENST00000468108 OSCARQ8IYS5 282 aa16.63■□□□□ 0.25
CCDC66-211ENST00000468108 SLC4A1APQ9BWU0 796 aaKnown RBP16.63■□□□□ 0.25
CCDC66-211ENST00000468108 PIP4P2Q8N4L2 257 aa16.62■□□□□ 0.25
CCDC66-211ENST00000468108 PITPNM1O00562 1244 aa16.51■□□□□ 0.23
CCDC66-211ENST00000468108 HAX1O00165 279 aa16.45■□□□□ 0.22
CCDC66-211ENST00000468108 FXR2P51116 673 aaKnown RBP eCLIP16.44■□□□□ 0.22
CCDC66-211ENST00000468108 ZBTB22O15209 634 aa16.27■□□□□ 0.2
CCDC66-211ENST00000468108 SPDYE2BA6NHP3 402 aa16.2■□□□□ 0.18
CCDC66-211ENST00000468108 SPDYE6P0CI01 402 aa16.2■□□□□ 0.18
CCDC66-211ENST00000468108 EVX2Q03828 476 aa16.2■□□□□ 0.18
CCDC66-211ENST00000468108 SPDYE2Q495Y8 402 aa16.2■□□□□ 0.18
CCDC66-211ENST00000468108 ATXN8OSP0DMR3 200 aa16.19■□□□□ 0.18
CCDC66-211ENST00000468108 FBLN2P98095 1184 aa16.15■□□□□ 0.18
CCDC66-211ENST00000468108 PRKAR2AP13861 404 aaKnown RBP16.07■□□□□ 0.16
CCDC66-211ENST00000468108 CLEC11AQ9Y240 323 aa16.04■□□□□ 0.16
CCDC66-211ENST00000468108 SPDYE1Q8NFV5 336 aaPredicted RBP16.03■□□□□ 0.16
CCDC66-211ENST00000468108 MKRN4PQ13434 485 aaPredicted RBP15.96■□□□□ 0.15
CCDC66-211ENST00000468108 C19orf67A6NJJ6 358 aa15.93■□□□□ 0.14
CCDC66-211ENST00000468108 ZNF692Q9BU19 519 aaPredicted RBP15.92■□□□□ 0.14
CCDC66-211ENST00000468108 SSUH2Q9Y2M2 353 aa15.92■□□□□ 0.14
CCDC66-211ENST00000468108 GABBR2O75899 941 aa15.81■□□□□ 0.12
CCDC66-211ENST00000468108 CHADLQ6NUI6 762 aa15.78■□□□□ 0.12
CCDC66-211ENST00000468108 PRR29P0C7W0 189 aa15.7■□□□□ 0.1
CCDC66-211ENST00000468108 LHX8Q68G74 356 aa15.69■□□□□ 0.1
CCDC66-211ENST00000468108 PABPN1Q86U42 306 aaKnown RBP eCLIP15.68■□□□□ 0.1
CCDC66-211ENST00000468108 CD44P16070 742 aaKnown RBP15.53■□□□□ 0.08
CCDC66-211ENST00000468108 FARP1Q9Y4F1 1045 aaPredicted RBP15.49■□□□□ 0.07
CCDC66-211ENST00000468108 POTEIP0CG38 1075 aa15.48■□□□□ 0.07
CCDC66-211ENST00000468108 CLCN6P51797 869 aa15.38■□□□□ 0.05
CCDC66-211ENST00000468108 DCBLD2Q96PD2 775 aa15.3■□□□□ 0.04
CCDC66-211ENST00000468108 ZNF579Q8NAF0 562 aaKnown RBP15.26■□□□□ 0.03
CCDC66-211ENST00000468108 ZRANB1Q9UGI0 708 aa15.24■□□□□ 0.03
CCDC66-211ENST00000468108 CREBZFQ9NS37 354 aa15.19■□□□□ 0.02
CCDC66-211ENST00000468108 STAG3Q9UJ98 1225 aa15.14■□□□□ 0.01
CCDC66-211ENST00000468108 GALR2O43603 387 aaPredicted RBP15.12■□□□□ 0.01
CCDC66-211ENST00000468108 PLSCR2Q9NRY7 297 aa15.1■□□□□ 0.01
CCDC66-211ENST00000468108 CSRNP3Q8WYN3 585 aa15.09■□□□□ 0.01
CCDC66-211ENST00000468108 PAK3O75914 559 aaPredicted RBP15.01□□□□□ -0.01
CCDC66-211ENST00000468108 OTUD5Q96G74 571 aa15□□□□□ -0.01
CCDC66-211ENST00000468108 PHF12Q96QT6 1004 aa14.99□□□□□ -0.01
CCDC66-211ENST00000468108 SPDYE4A6NLX3 237 aa14.97□□□□□ -0.01
CCDC66-211ENST00000468108 POTEB2H3BUK9 544 aa14.96□□□□□ -0.01
CCDC66-211ENST00000468108 NPM1P06748 294 aaKnown RBP eCLIP14.9□□□□□ -0.02
CCDC66-211ENST00000468108 MNX1P50219 401 aaPredicted RBP14.86□□□□□ -0.03
CCDC66-211ENST00000468108 PELP1Q8IZL8 1130 aaKnown RBP14.86□□□□□ -0.03
CCDC66-211ENST00000468108 POTEMA6NI47 508 aa14.81□□□□□ -0.04
CCDC66-211ENST00000468108 MS4A3Q96HJ5 214 aa14.78□□□□□ -0.04
CCDC66-211ENST00000468108 ASTLQ6HA08 431 aaPredicted RBP14.76□□□□□ -0.05
CCDC66-211ENST00000468108 METRNQ9UJH8 293 aa14.76□□□□□ -0.05
CCDC66-211ENST00000468108 POTEGQ6S5H5 508 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms