RNA–Protein interactions for RNA: ENST00000468086.1

RBM39-226, Transcript of RNA binding motif protein 39, humanhuman

TSL 4

Gene RBM39, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-226ENST00000468086 AEBP2Q6ZN18 517 aaPredicted RBP28.48■■■□□ 2.15
RBM39-226ENST00000468086 CHIC1Q5VXU3 224 aa27.12■■□□□ 1.93
RBM39-226ENST00000468086 SENP3Q9H4L4 574 aaPredicted RBP24.35■■□□□ 1.49
RBM39-226ENST00000468086 PHF23Q9BUL5 403 aaPredicted RBP24.01■■□□□ 1.43
RBM39-226ENST00000468086 FOXD1Q16676 465 aa22.65■■□□□ 1.22
RBM39-226ENST00000468086 PLPPR3Q6T4P5 718 aa21.71■■□□□ 1.07
RBM39-226ENST00000468086 MSH5O43196 834 aa21.22■□□□□ 0.99
RBM39-226ENST00000468086 PIAS4Q8N2W9 510 aaPredicted RBP21.21■□□□□ 0.99
RBM39-226ENST00000468086 PPP6R1Q9UPN7 881 aa21.19■□□□□ 0.98
RBM39-226ENST00000468086 ADRA2BP18089 450 aa21.15■□□□□ 0.98
RBM39-226ENST00000468086 POTEDQ86YR6 584 aa20.62■□□□□ 0.89
RBM39-226ENST00000468086 MAPK8IP2Q13387 824 aaPredicted RBP19.4■□□□□ 0.7
RBM39-226ENST00000468086 SCAF1Q9H7N4 1312 aaKnown RBP19.4■□□□□ 0.7
RBM39-226ENST00000468086 DMRT2Q9Y5R5 561 aa19.29■□□□□ 0.68
RBM39-226ENST00000468086 PPP4R3CPQ6ZMV5 832 aa19.02■□□□□ 0.64
RBM39-226ENST00000468086 CNKSR2Q8WXI2 1034 aa18.67■□□□□ 0.58
RBM39-226ENST00000468086 HOXD11P31277 338 aaPredicted RBP18.6■□□□□ 0.57
RBM39-226ENST00000468086 DCAF8L1A6NGE4 600 aa18.54■□□□□ 0.56
RBM39-226ENST00000468086 RNF216Q9NWF9 866 aaPredicted RBP18.48■□□□□ 0.55
RBM39-226ENST00000468086 NCBP3Q53F19 620 aaKnown RBP18.33■□□□□ 0.52
RBM39-226ENST00000468086 CACNB1Q02641 598 aaPredicted RBP18.19■□□□□ 0.5
RBM39-226ENST00000468086 RNF39Q9H2S5 420 aa18.09■□□□□ 0.49
RBM39-226ENST00000468086 NPM3O75607 178 aaKnown RBP18.02■□□□□ 0.48
RBM39-226ENST00000468086 DNAJC5BQ9UF47 199 aa17.96■□□□□ 0.47
RBM39-226ENST00000468086 KCNA4P22459 653 aa17.84■□□□□ 0.45
RBM39-226ENST00000468086 C1QBPQ07021 282 aaKnown RBP17.84■□□□□ 0.45
RBM39-226ENST00000468086 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.75■□□□□ 0.438e-12■□□□□ 9.6
RBM39-226ENST00000468086 U3KPZ7 1027 aaPredicted RBP17.36■□□□□ 0.37
RBM39-226ENST00000468086 SLC4A2P04920 1241 aa17.19■□□□□ 0.34
RBM39-226ENST00000468086 CAPN15O75808 1086 aa17.09■□□□□ 0.33
RBM39-226ENST00000468086 SPINK5Q9NQ38 1064 aaPredicted RBP17.09■□□□□ 0.33
RBM39-226ENST00000468086 SLC4A1APQ9BWU0 796 aaKnown RBP17■□□□□ 0.31
RBM39-226ENST00000468086 DSG3P32926 999 aa16.95■□□□□ 0.3
RBM39-226ENST00000468086 APLP2Q06481 763 aa16.94■□□□□ 0.3
RBM39-226ENST00000468086 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.93■□□□□ 0.3
RBM39-226ENST00000468086 HNRNPUL2Q1KMD3 747 aaKnown RBP16.93■□□□□ 0.3
RBM39-226ENST00000468086 TRHP20396 242 aaPredicted RBP16.82■□□□□ 0.28
RBM39-226ENST00000468086 SAMD1Q6SPF0 538 aaPredicted RBP16.82■□□□□ 0.28
RBM39-226ENST00000468086 ZNF219Q9P2Y4 722 aaPredicted RBP16.81■□□□□ 0.28
RBM39-226ENST00000468086 MYCNP04198 464 aaPredicted RBP16.7■□□□□ 0.26
RBM39-226ENST00000468086 ABCB7O75027 752 aa16.68■□□□□ 0.26
RBM39-226ENST00000468086 FOXD4L1Q9NU39 408 aa16.57■□□□□ 0.24
RBM39-226ENST00000468086 ZBTB22O15209 634 aa16.43■□□□□ 0.22
RBM39-226ENST00000468086 POLA2Q14181 598 aa16.37■□□□□ 0.21
RBM39-226ENST00000468086 ATF5Q9Y2D1 282 aaPredicted RBP16.29■□□□□ 0.2
RBM39-226ENST00000468086 EHMT2Q96KQ7 1210 aa16.27■□□□□ 0.2
RBM39-226ENST00000468086 RBM42Q9BTD8 480 aaKnown RBP16.22■□□□□ 0.19
RBM39-226ENST00000468086 CSRNP3Q8WYN3 585 aa16.21■□□□□ 0.19
RBM39-226ENST00000468086 POTEHQ6S545 545 aa16.18■□□□□ 0.18
RBM39-226ENST00000468086 ZBTB12Q9Y330 459 aaPredicted RBP16.07■□□□□ 0.16
RBM39-226ENST00000468086 ATXN8OSP0DMR3 200 aa16.05■□□□□ 0.16
RBM39-226ENST00000468086 OSCARQ8IYS5 282 aa15.85■□□□□ 0.13
RBM39-226ENST00000468086 CHRDL2Q6WN34 429 aa15.83■□□□□ 0.12
RBM39-226ENST00000468086 AKT1S1Q96B36 256 aa15.83■□□□□ 0.12
RBM39-226ENST00000468086 FBLN2P98095 1184 aa15.7■□□□□ 0.1
RBM39-226ENST00000468086 REM2Q8IYK8 340 aaPredicted RBP15.67■□□□□ 0.1
RBM39-226ENST00000468086 SPDYE2BA6NHP3 402 aa15.57■□□□□ 0.08
RBM39-226ENST00000468086 SPDYE6P0CI01 402 aa15.57■□□□□ 0.08
RBM39-226ENST00000468086 SPDYE2Q495Y8 402 aa15.57■□□□□ 0.08
RBM39-226ENST00000468086 MKRN4PQ13434 485 aaPredicted RBP15.54■□□□□ 0.08
RBM39-226ENST00000468086 PITPNM1O00562 1244 aa15.5■□□□□ 0.07
RBM39-226ENST00000468086 PIP4P2Q8N4L2 257 aa15.45■□□□□ 0.06
RBM39-226ENST00000468086 ZNF692Q9BU19 519 aaPredicted RBP15.38■□□□□ 0.05
RBM39-226ENST00000468086 FXR2P51116 673 aaKnown RBP eCLIP15.35■□□□□ 0.05
RBM39-226ENST00000468086 SSUH2Q9Y2M2 353 aa15.33■□□□□ 0.04
RBM39-226ENST00000468086 SPDYE1Q8NFV5 336 aaPredicted RBP15.29■□□□□ 0.04
RBM39-226ENST00000468086 CLEC11AQ9Y240 323 aa15.26■□□□□ 0.03
RBM39-226ENST00000468086 SP7Q8TDD2 431 aaPredicted RBP15.19■□□□□ 0.02
RBM39-226ENST00000468086 HAX1O00165 279 aa15.18■□□□□ 0.02
RBM39-226ENST00000468086 PABPN1Q86U42 306 aaKnown RBP eCLIP15.15■□□□□ 0.023e-7■□□□□ 8.9
RBM39-226ENST00000468086 PRKAR2AP13861 404 aaKnown RBP15.11■□□□□ 0.01
RBM39-226ENST00000468086 PRR29P0C7W0 189 aa15.02■□□□□ -0
RBM39-226ENST00000468086 CHADLQ6NUI6 762 aa14.94□□□□□ -0.02
RBM39-226ENST00000468086 EVX2Q03828 476 aa14.93□□□□□ -0.02
RBM39-226ENST00000468086 C19orf67A6NJJ6 358 aa14.86□□□□□ -0.03
RBM39-226ENST00000468086 SPDYE4A6NLX3 237 aa14.86□□□□□ -0.03
RBM39-226ENST00000468086 STAG3Q9UJ98 1225 aa14.77□□□□□ -0.05
RBM39-226ENST00000468086 FARP1Q9Y4F1 1045 aaPredicted RBP14.74□□□□□ -0.05
RBM39-226ENST00000468086 FKBP8Q14318 412 aa14.66□□□□□ -0.06
RBM39-226ENST00000468086 CD44P16070 742 aaKnown RBP14.65□□□□□ -0.06
RBM39-226ENST00000468086 GABBR2O75899 941 aa14.64□□□□□ -0.07
RBM39-226ENST00000468086 CREBZFQ9NS37 354 aa14.61□□□□□ -0.07
RBM39-226ENST00000468086 PROM2Q8N271 834 aa14.6□□□□□ -0.07
RBM39-226ENST00000468086 CLCN6P51797 869 aa14.46□□□□□ -0.09
RBM39-226ENST00000468086 ZRANB1Q9UGI0 708 aa14.44□□□□□ -0.1
RBM39-226ENST00000468086 ZNF579Q8NAF0 562 aaKnown RBP14.41□□□□□ -0.1
RBM39-226ENST00000468086 NPM1P06748 294 aaKnown RBP eCLIP14.39□□□□□ -0.11
RBM39-226ENST00000468086 PAK3O75914 559 aaPredicted RBP14.37□□□□□ -0.11
RBM39-226ENST00000468086 MNX1P50219 401 aaPredicted RBP14.36□□□□□ -0.11
RBM39-226ENST00000468086 FBXO3Q9UK99 471 aa14.3□□□□□ -0.12
RBM39-226ENST00000468086 POTEIP0CG38 1075 aa14.29□□□□□ -0.12
RBM39-226ENST00000468086 DCBLD2Q96PD2 775 aa14.28□□□□□ -0.12
RBM39-226ENST00000468086 LHX8Q68G74 356 aa14.25□□□□□ -0.13
RBM39-226ENST00000468086 PHF12Q96QT6 1004 aa14.24□□□□□ -0.13
RBM39-226ENST00000468086 GALR2O43603 387 aaPredicted RBP14.22□□□□□ -0.13
RBM39-226ENST00000468086 PLEKHG5O94827 1062 aa14.2□□□□□ -0.14
RBM39-226ENST00000468086 MIER1Q8N108 512 aa14.17□□□□□ -0.14
RBM39-226ENST00000468086 TSPYL2Q9H2G4 693 aaPredicted RBP14.12□□□□□ -0.15
RBM39-226ENST00000468086 PLCD3Q8N3E9 789 aa14.08□□□□□ -0.16
RBM39-226ENST00000468086 MS4A3Q96HJ5 214 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms